Wall clock time and date at job start Tue Mar 31 2020 10:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48506 * 109.46948 * 239.99917 * 3 2 1 5 5 H 1.48495 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47184 * 119.99891 * 3 2 1 7 7 C 1.38816 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99860 * 197.35693 * 7 2 1 9 9 N 1.36937 * 119.99773 * 17.34310 * 7 2 1 10 10 C 1.46929 * 120.63017 * 207.67548 * 9 7 2 11 11 C 1.53192 * 108.77700 * 233.63877 * 10 9 7 12 12 C 1.53042 * 109.31304 * 305.36493 * 11 10 9 13 13 C 1.53040 * 109.53687 * 61.36448 * 12 11 10 14 14 H 1.09004 * 109.49285 * 58.61714 * 13 12 11 15 15 N 1.46500 * 109.49738 * 178.68210 * 13 12 11 16 16 C 1.34777 * 119.99811 * 205.00266 * 15 13 12 17 17 O 1.21280 * 120.00140 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99727 * 180.02562 * 16 15 13 19 19 C 1.53002 * 109.47174 * 180.02562 * 18 16 15 20 20 H 1.09000 * 110.67094 * 308.23789 * 19 18 16 21 21 C 1.54891 * 110.75650 * 71.66810 * 19 18 16 22 22 C 1.54265 * 104.19334 * 156.25915 * 21 19 18 23 23 C 1.53873 * 106.59867 * 336.39292 * 22 21 19 24 24 F 1.39907 * 110.02956 * 240.71349 * 23 22 21 25 25 F 1.39898 * 110.03232 * 119.28686 * 23 22 21 26 26 C 1.54266 * 106.59990 * 359.97438 * 23 22 21 27 27 C 1.46926 * 120.63196 * 27.70916 * 9 7 2 28 28 H 0.97006 * 120.00160 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.58198 * 113.85044 * 10 9 7 30 30 H 1.08997 * 109.70386 * 353.49924 * 10 9 7 31 31 H 1.09002 * 109.49525 * 185.41796 * 11 10 9 32 32 H 1.08994 * 109.49987 * 65.32046 * 11 10 9 33 33 H 1.09001 * 109.45638 * 301.35036 * 12 11 10 34 34 H 1.08994 * 109.44672 * 181.38147 * 12 11 10 35 35 H 0.96996 * 120.00057 * 25.00730 * 15 13 12 36 36 H 1.08994 * 109.47194 * 59.99914 * 18 16 15 37 37 H 1.08998 * 109.47076 * 299.99829 * 18 16 15 38 38 H 1.09008 * 110.48637 * 274.93926 * 21 19 18 39 39 H 1.09004 * 110.48653 * 37.58304 * 21 19 18 40 40 H 1.09002 * 110.02912 * 217.10688 * 22 21 19 41 41 H 1.08997 * 110.03076 * 95.67641 * 22 21 19 42 42 H 1.09003 * 110.48552 * 142.29006 * 26 23 22 43 43 H 1.09001 * 110.48766 * 264.80444 * 26 23 22 44 44 H 1.08996 * 109.58476 * 6.57780 * 27 9 7 45 45 H 1.08996 * 109.58607 * 246.15101 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0534 -1.2236 0.2785 9 7 1.3721 -2.3609 -0.3546 10 6 1.8193 -3.6548 0.1790 11 6 2.0749 -4.6092 -0.9918 12 6 0.8194 -4.6888 -1.8633 13 6 0.5013 -3.3033 -2.4302 14 1 1.3498 -2.9452 -3.0132 15 7 -0.6823 -3.3865 -3.2895 16 6 -0.8684 -2.4804 -4.2697 17 8 -0.0559 -1.5964 -4.4406 18 6 -2.0863 -2.5657 -5.1533 19 6 -2.0552 -1.4280 -6.1758 20 1 -1.9044 -0.4690 -5.6800 21 6 -0.9594 -1.6775 -7.2416 22 6 -1.4279 -0.8617 -8.4642 23 6 -2.9508 -0.6927 -8.3224 24 9 -3.6015 -1.2780 -9.4139 25 9 -3.2768 0.6653 -8.2414 26 6 -3.3546 -1.4124 -7.0190 27 6 0.2278 -2.3341 -1.2758 28 1 -0.4851 0.8401 -0.0004 29 1 1.0468 -4.0696 0.8266 30 1 2.7392 -3.5197 0.7478 31 1 2.3143 -5.6007 -0.6073 32 1 2.9088 -4.2386 -1.5879 33 1 -0.0197 -5.0359 -1.2604 34 1 0.9905 -5.3861 -2.6833 35 1 -1.3319 -4.0937 -3.1530 36 1 -2.9850 -2.4813 -4.5425 37 1 -2.0902 -3.5226 -5.6751 38 1 0.0061 -1.3151 -6.8883 39 1 -0.9025 -2.7375 -7.4894 40 1 -1.1959 -1.3997 -9.3833 41 1 -0.9429 0.1144 -8.4698 42 1 -4.1372 -0.8562 -6.5029 43 1 -3.6868 -2.4286 -7.2315 44 1 0.0984 -1.3255 -1.6683 45 1 -0.6743 -2.6411 -0.7468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007457939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:14 Heat of formation + Delta-G solvation = -138.863270 kcal Electronic energy + Delta-G solvation = -27371.239107 eV Core-core repulsion = 23251.786956 eV Total energy + Delta-G solvation = -4119.452151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.04351 -47.11724 -39.72366 -37.89333 -36.88958 -34.08857 -32.68920 -31.43993 -30.02977 -29.12882 -28.51769 -25.67834 -25.26545 -22.30955 -21.99771 -21.15240 -20.65484 -19.86156 -19.24046 -17.74487 -16.94214 -16.87986 -16.73120 -15.90551 -15.55437 -15.03348 -14.84497 -14.51909 -14.30943 -14.02345 -13.86861 -13.58629 -13.46617 -13.37816 -13.25668 -13.03168 -12.46096 -12.34433 -12.21186 -12.08761 -11.83515 -11.71854 -11.52304 -11.05800 -11.01190 -10.84291 -10.77747 -10.69991 -10.68659 -10.48703 -10.26598 -9.99861 -9.93733 -9.53041 -9.30940 -8.52584 -8.42349 -6.65822 -5.75573 -3.18642 3.04081 3.41248 3.44883 3.49243 3.51457 3.62632 3.81877 4.02909 4.19733 4.54349 4.78829 4.85477 4.88976 4.99361 5.17237 5.24623 5.32922 5.36935 5.39012 5.41101 5.46798 5.53649 5.60982 5.64426 5.70904 5.73454 5.83472 6.06924 6.09880 6.13530 6.22028 6.32600 6.40900 6.49772 6.69233 6.76826 6.94267 6.96497 7.29935 7.72194 7.82817 7.94678 8.48094 8.67059 9.23306 9.87284 10.41974 11.32428 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.003429 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.773790 B = 8163.378127 C = 9508.798274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.117 3.883 14 H 0.081 0.919 15 N -0.723 5.723 16 C 0.508 3.492 17 O -0.530 6.530 18 C -0.132 4.132 19 C -0.074 4.074 20 H 0.098 0.902 21 C -0.115 4.115 22 C -0.164 4.164 23 C 0.280 3.720 24 F -0.204 7.204 25 F -0.199 7.199 26 C -0.158 4.158 27 C 0.168 3.832 28 H 0.254 0.746 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.392 0.608 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 -9.350 -14.050 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.099 0.901 15 N -0.373 5.373 16 C 0.293 3.707 17 O -0.407 6.407 18 C -0.172 4.172 19 C -0.093 4.093 20 H 0.117 0.883 21 C -0.152 4.152 22 C -0.202 4.202 23 C 0.244 3.756 24 F -0.185 7.185 25 F -0.180 7.180 26 C -0.196 4.196 27 C 0.041 3.959 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.224 0.776 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.985 -8.515 -14.174 17.585 hybrid contribution -0.179 0.560 -0.053 0.590 sum -6.164 -7.955 -14.227 17.427 Atomic orbital electron populations 1.70006 1.05347 1.25654 1.53339 1.25012 0.95245 0.98446 1.00437 0.86379 0.79014 0.83343 0.78104 1.20875 1.21610 1.20897 1.19109 0.92718 0.84881 1.42030 0.91668 1.43960 1.36044 1.01577 1.49563 1.20951 0.97713 0.86900 0.92865 1.22002 0.97006 0.99302 0.98787 1.21671 0.98872 0.96121 0.98705 1.21953 0.87180 0.96747 0.93003 0.90100 1.46099 1.26274 1.31221 1.33717 1.20435 0.87484 0.81849 0.80886 1.90736 1.45613 1.33816 1.70485 1.21658 0.97978 1.00009 0.97593 1.21846 0.92633 1.00251 0.94596 0.88333 1.22428 1.00377 0.99823 0.92594 1.23195 0.91332 1.04035 1.01594 1.21877 0.92889 0.75548 0.85323 1.92998 1.83841 1.83911 1.57716 1.93021 1.94124 1.34317 1.96523 1.23435 1.00095 1.02436 0.93649 1.21083 0.88636 0.98990 0.87235 0.93613 0.96459 0.92651 0.92678 0.92151 0.92324 0.93193 0.77566 0.88622 0.89003 0.88867 0.90999 0.88994 0.88713 0.88786 0.88340 0.88735 0.96634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 11.19 55.49 0.62 -26.09 16 2 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 3 Si 0.90 22.49 29.59 -169.99 -5.03 17.46 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -7.23 9.59 -15.06 -0.14 -7.37 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -14.86 2.99 -172.32 -0.52 -15.37 16 10 C 0.14 2.92 6.51 -3.71 -0.02 2.90 16 11 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 12 C -0.12 -1.80 5.35 -26.69 -0.14 -1.94 16 13 C 0.12 2.19 2.60 -67.81 -0.18 2.01 16 14 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 15 N -0.72 -10.82 5.08 -53.69 -0.27 -11.10 16 16 C 0.51 7.89 7.63 -10.98 -0.08 7.80 16 17 O -0.53 -10.74 14.50 5.56 0.08 -10.66 16 18 C -0.13 -1.36 5.20 -27.88 -0.15 -1.51 16 19 C -0.07 -0.81 2.45 -88.62 -0.22 -1.03 16 20 H 0.10 1.32 7.88 -51.93 -0.41 0.91 16 21 C -0.11 -1.20 5.76 -25.07 -0.14 -1.35 16 22 C -0.16 -1.58 6.50 -25.61 -0.17 -1.75 16 23 C 0.28 3.00 2.57 -25.61 -0.07 2.93 16 24 F -0.20 -2.33 17.04 2.25 0.04 -2.29 16 25 F -0.20 -2.53 17.04 2.25 0.04 -2.49 16 26 C -0.16 -1.44 5.85 -25.06 -0.15 -1.59 16 27 C 0.17 4.01 4.89 -3.71 -0.02 3.99 16 28 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.02 0.36 8.14 -51.92 -0.42 -0.07 16 30 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.39 4.45 8.60 -40.82 -0.35 4.09 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.70 7.99 -51.93 -0.41 0.28 16 38 H 0.09 1.18 7.38 -51.92 -0.38 0.80 16 39 H 0.07 0.65 7.93 -51.93 -0.41 0.23 16 40 H 0.09 0.76 8.02 -51.93 -0.42 0.35 16 41 H 0.09 0.93 8.02 -51.93 -0.42 0.51 16 42 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 43 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 44 H 0.09 2.68 6.04 -51.93 -0.31 2.36 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -32.94 361.36 -8.59 -41.52 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.27 Total: 2.68 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.72 Total: 0.90 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.17 Total: -52.56 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.08 Total: -4.79 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.94 -8.59 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007457939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.340 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds