Wall clock time and date at job start Tue Mar 31 2020 10:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48506 * 109.46948 * 239.99917 * 3 2 1 5 5 H 1.48495 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47184 * 119.99891 * 3 2 1 7 7 C 1.38816 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99860 * 197.35693 * 7 2 1 9 9 N 1.36937 * 119.99773 * 17.34310 * 7 2 1 10 10 C 1.46929 * 120.63017 * 207.67548 * 9 7 2 11 11 C 1.53192 * 108.77700 * 233.63877 * 10 9 7 12 12 C 1.53042 * 109.31304 * 305.36493 * 11 10 9 13 13 C 1.53040 * 109.53687 * 61.36448 * 12 11 10 14 14 H 1.09004 * 109.49285 * 58.61714 * 13 12 11 15 15 N 1.46500 * 109.49738 * 178.68210 * 13 12 11 16 16 C 1.34777 * 119.99811 * 205.00266 * 15 13 12 17 17 O 1.21280 * 120.00140 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99727 * 180.02562 * 16 15 13 19 19 C 1.53002 * 109.47174 * 180.02562 * 18 16 15 20 20 H 1.09000 * 110.67094 * 308.23789 * 19 18 16 21 21 C 1.54891 * 110.75650 * 71.66810 * 19 18 16 22 22 C 1.54265 * 104.19334 * 156.25915 * 21 19 18 23 23 C 1.53873 * 106.59867 * 336.39292 * 22 21 19 24 24 F 1.39907 * 110.02956 * 240.71349 * 23 22 21 25 25 F 1.39898 * 110.03232 * 119.28686 * 23 22 21 26 26 C 1.54266 * 106.59990 * 359.97438 * 23 22 21 27 27 C 1.46926 * 120.63196 * 27.70916 * 9 7 2 28 28 H 0.97006 * 120.00160 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.58198 * 113.85044 * 10 9 7 30 30 H 1.08997 * 109.70386 * 353.49924 * 10 9 7 31 31 H 1.09002 * 109.49525 * 185.41796 * 11 10 9 32 32 H 1.08994 * 109.49987 * 65.32046 * 11 10 9 33 33 H 1.09001 * 109.45638 * 301.35036 * 12 11 10 34 34 H 1.08994 * 109.44672 * 181.38147 * 12 11 10 35 35 H 0.96996 * 120.00057 * 25.00730 * 15 13 12 36 36 H 1.08994 * 109.47194 * 59.99914 * 18 16 15 37 37 H 1.08998 * 109.47076 * 299.99829 * 18 16 15 38 38 H 1.09008 * 110.48637 * 274.93926 * 21 19 18 39 39 H 1.09004 * 110.48653 * 37.58304 * 21 19 18 40 40 H 1.09002 * 110.02912 * 217.10688 * 22 21 19 41 41 H 1.08997 * 110.03076 * 95.67641 * 22 21 19 42 42 H 1.09003 * 110.48552 * 142.29006 * 26 23 22 43 43 H 1.09001 * 110.48766 * 264.80444 * 26 23 22 44 44 H 1.08996 * 109.58476 * 6.57780 * 27 9 7 45 45 H 1.08996 * 109.58607 * 246.15101 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0534 -1.2236 0.2785 9 7 1.3721 -2.3609 -0.3546 10 6 1.8193 -3.6548 0.1790 11 6 2.0749 -4.6092 -0.9918 12 6 0.8194 -4.6888 -1.8633 13 6 0.5013 -3.3033 -2.4302 14 1 1.3498 -2.9452 -3.0132 15 7 -0.6823 -3.3865 -3.2895 16 6 -0.8684 -2.4804 -4.2697 17 8 -0.0559 -1.5964 -4.4406 18 6 -2.0863 -2.5657 -5.1533 19 6 -2.0552 -1.4280 -6.1758 20 1 -1.9044 -0.4690 -5.6800 21 6 -0.9594 -1.6775 -7.2416 22 6 -1.4279 -0.8617 -8.4642 23 6 -2.9508 -0.6927 -8.3224 24 9 -3.6015 -1.2780 -9.4139 25 9 -3.2768 0.6653 -8.2414 26 6 -3.3546 -1.4124 -7.0190 27 6 0.2278 -2.3341 -1.2758 28 1 -0.4851 0.8401 -0.0004 29 1 1.0468 -4.0696 0.8266 30 1 2.7392 -3.5197 0.7478 31 1 2.3143 -5.6007 -0.6073 32 1 2.9088 -4.2386 -1.5879 33 1 -0.0197 -5.0359 -1.2604 34 1 0.9905 -5.3861 -2.6833 35 1 -1.3319 -4.0937 -3.1530 36 1 -2.9850 -2.4813 -4.5425 37 1 -2.0902 -3.5226 -5.6751 38 1 0.0061 -1.3151 -6.8883 39 1 -0.9025 -2.7375 -7.4894 40 1 -1.1959 -1.3997 -9.3833 41 1 -0.9429 0.1144 -8.4698 42 1 -4.1372 -0.8562 -6.5029 43 1 -3.6868 -2.4286 -7.2315 44 1 0.0984 -1.3255 -1.6683 45 1 -0.6743 -2.6411 -0.7468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007457939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:13 Heat of formation + Delta-G solvation = -159.844542 kcal Electronic energy + Delta-G solvation = -27372.148923 eV Core-core repulsion = 23251.786956 eV Total energy + Delta-G solvation = -4120.361967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.93042 -48.01740 -40.98875 -39.21016 -38.09896 -35.72337 -34.40972 -32.46477 -31.84297 -30.40037 -29.51881 -27.25043 -26.63111 -23.95258 -23.54440 -22.01116 -21.69871 -21.19902 -20.64681 -18.75573 -18.63780 -18.03508 -17.71659 -17.14381 -16.88391 -16.58136 -16.09220 -15.80850 -15.48216 -15.33018 -15.21584 -14.85106 -14.76246 -14.52617 -14.35565 -14.21006 -14.10812 -13.91778 -13.49223 -13.15886 -12.93767 -12.87077 -12.66249 -12.54000 -12.47279 -12.33841 -12.25737 -12.07487 -11.86576 -11.69504 -11.63797 -11.60200 -11.56629 -11.24278 -10.64088 -10.55934 -9.98022 -8.69138 -7.90361 -5.35605 1.39358 1.45169 1.49570 1.82481 2.29365 2.48696 2.78600 2.99063 3.18705 3.25999 3.39745 3.73351 3.89342 3.98826 4.02197 4.05200 4.16896 4.25091 4.28410 4.35101 4.40759 4.49390 4.55488 4.66497 4.66559 4.76305 4.83517 4.87033 4.91609 4.94726 5.04732 5.09954 5.21399 5.22774 5.27374 5.35428 5.36549 5.52567 5.56636 5.61716 5.82600 6.35740 6.76752 7.11710 7.49740 7.85336 8.33478 9.13955 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.003429 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.773790 B = 8163.378127 C = 9508.798274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.047 4.047 3 Si 0.959 3.041 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.131 3.869 14 H 0.048 0.952 15 N -0.712 5.712 16 C 0.499 3.501 17 O -0.586 6.586 18 C -0.119 4.119 19 C -0.077 4.077 20 H 0.060 0.940 21 C -0.111 4.111 22 C -0.160 4.160 23 C 0.272 3.728 24 F -0.205 7.205 25 F -0.215 7.215 26 C -0.146 4.146 27 C 0.179 3.821 28 H 0.247 0.753 29 H 0.021 0.979 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.414 0.586 36 H 0.117 0.883 37 H 0.136 0.864 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.042 0.958 45 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.098 -12.401 -15.043 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.243 4.243 3 Si 0.787 3.213 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.162 4.162 12 C -0.144 4.144 13 C 0.025 3.975 14 H 0.066 0.934 15 N -0.364 5.364 16 C 0.287 3.713 17 O -0.466 6.466 18 C -0.158 4.158 19 C -0.097 4.097 20 H 0.079 0.921 21 C -0.149 4.149 22 C -0.198 4.198 23 C 0.236 3.764 24 F -0.187 7.187 25 F -0.196 7.196 26 C -0.183 4.183 27 C 0.052 3.948 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.251 0.749 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.147 0.853 44 H 0.061 0.939 45 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -6.641 -11.628 -15.161 20.228 hybrid contribution 0.049 1.498 0.280 1.525 sum -6.591 -10.130 -14.881 19.170 Atomic orbital electron populations 1.70156 1.06611 1.25641 1.55116 1.25733 0.96008 1.01398 1.01169 0.85463 0.77824 0.79683 0.78303 1.21224 1.21993 1.19233 1.19466 0.93021 0.86369 1.40871 0.91590 1.44259 1.36103 1.02577 1.50555 1.21178 0.97458 0.85692 0.94708 1.21901 0.97207 0.99995 0.97068 1.21630 0.98847 0.94138 0.99764 1.21414 0.87511 0.97582 0.91025 0.93414 1.45929 1.25734 1.31891 1.32846 1.21472 0.88291 0.80553 0.80974 1.90726 1.47957 1.35962 1.71971 1.21689 0.95603 1.01711 0.96835 1.21765 0.94041 0.98879 0.94978 0.92096 1.22376 0.98717 1.01157 0.92613 1.23173 0.90763 1.03769 1.02136 1.22138 0.93303 0.74929 0.86034 1.92992 1.83909 1.83803 1.57947 1.92991 1.94264 1.35755 1.96627 1.23392 0.98861 1.04012 0.92076 1.20803 0.87846 0.97648 0.88487 0.94391 0.96087 0.92870 0.88549 0.93197 0.90752 0.89497 0.74901 0.86452 0.84642 0.91961 0.88568 0.87161 0.89692 0.88416 0.85255 0.93932 0.98358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 11.19 21.65 0.24 -57.45 16 2 C -0.05 -2.79 4.91 84.86 0.42 -2.38 16 3 Si 0.96 47.79 29.59 68.60 2.03 49.82 16 4 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 5 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.27 -15.40 9.59 84.03 0.81 -14.59 16 8 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 9 N -0.61 -31.52 2.99 -699.08 -2.09 -33.61 16 10 C 0.13 5.42 6.51 86.36 0.56 5.98 16 11 C -0.12 -3.72 6.08 30.67 0.19 -3.54 16 12 C -0.11 -2.95 5.35 30.62 0.16 -2.78 16 13 C 0.13 4.89 2.60 45.07 0.12 5.00 16 14 H 0.05 2.11 7.58 -2.38 -0.02 2.09 16 15 N -0.71 -20.30 5.08 -442.15 -2.25 -22.55 16 16 C 0.50 15.27 7.63 87.66 0.67 15.94 16 17 O -0.59 -24.91 14.50 -3.03 -0.04 -24.96 16 18 C -0.12 -2.14 5.20 29.85 0.16 -1.98 16 19 C -0.08 -1.62 2.45 -9.50 -0.02 -1.64 16 20 H 0.06 1.73 7.88 -2.39 -0.02 1.71 16 21 C -0.11 -2.24 5.76 31.67 0.18 -2.06 16 22 C -0.16 -2.98 6.50 31.32 0.20 -2.78 16 23 C 0.27 5.47 2.57 31.32 0.08 5.55 16 24 F -0.21 -4.27 17.04 44.97 0.77 -3.50 16 25 F -0.22 -5.47 17.04 44.97 0.77 -4.70 16 26 C -0.15 -2.31 5.85 31.68 0.19 -2.13 16 27 C 0.18 8.86 4.89 86.36 0.42 9.28 16 28 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 29 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.05 2.11 7.94 -2.39 -0.02 2.10 16 31 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.41 8.04 8.60 -92.71 -0.80 7.24 16 36 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.14 1.34 7.99 -2.39 -0.02 1.32 16 38 H 0.06 1.66 7.38 -2.38 -0.02 1.64 16 39 H 0.10 1.45 7.93 -2.39 -0.02 1.44 16 40 H 0.11 1.63 8.02 -2.39 -0.02 1.61 16 41 H 0.08 1.73 8.02 -2.39 -0.02 1.71 16 42 H 0.10 1.51 8.11 -2.39 -0.02 1.49 16 43 H 0.13 1.30 8.03 -2.39 -0.02 1.28 16 44 H 0.04 2.54 6.04 -2.39 -0.01 2.53 16 45 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -78.13 361.36 3.74 -74.39 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.19 Total: 14.69 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 4.13 Total: 7.87 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.10 Total: -113.61 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.04 Total: -24.96 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 1.53 Total: -8.21 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -78.13 3.74 -74.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007457939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.451 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds