Wall clock time and date at job start Tue Mar 31 2020 10:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99685 * 2 1 4 4 H 1.48503 * 109.47088 * 239.99904 * 3 2 1 5 5 H 1.48494 * 109.47258 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47009 * 120.00492 * 3 2 1 7 7 C 1.38811 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99842 * 197.35644 * 7 2 1 9 9 N 1.36938 * 120.00109 * 17.34745 * 7 2 1 10 10 C 1.46927 * 120.62998 * 27.68138 * 9 7 2 11 11 C 1.53187 * 108.77764 * 126.40868 * 10 9 7 12 12 C 1.53042 * 109.30922 * 54.63531 * 11 10 9 13 13 C 1.53036 * 109.54219 * 298.63482 * 12 11 10 14 14 H 1.08997 * 109.49726 * 301.38279 * 13 12 11 15 15 N 1.46497 * 109.49967 * 181.31700 * 13 12 11 16 16 C 1.34779 * 119.99662 * 154.99598 * 15 13 12 17 17 O 1.21274 * 120.00489 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99818 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.47388 * 180.02562 * 18 16 15 20 20 H 1.08997 * 110.05407 * 306.41795 * 19 18 16 21 21 C 1.54258 * 110.03053 * 67.83524 * 19 18 16 22 22 C 1.54890 * 104.19597 * 142.89568 * 21 19 18 23 23 C 1.54970 * 102.77674 * 322.08673 * 22 21 19 24 24 C 1.53876 * 110.03241 * 185.00666 * 19 18 16 25 25 F 1.39898 * 110.03532 * 359.97438 * 24 19 18 26 26 F 1.39892 * 110.03231 * 121.38276 * 24 19 18 27 27 C 1.46923 * 120.63305 * 207.70026 * 9 7 2 28 28 H 0.96992 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58699 * 6.61861 * 10 9 7 30 30 H 1.09004 * 109.59012 * 246.19949 * 10 9 7 31 31 H 1.09000 * 109.50167 * 294.68576 * 11 10 9 32 32 H 1.09005 * 109.50107 * 174.58401 * 11 10 9 33 33 H 1.09004 * 109.46027 * 178.61541 * 12 11 10 34 34 H 1.08999 * 109.46346 * 58.65866 * 12 11 10 35 35 H 0.96996 * 120.00350 * 334.99753 * 15 13 12 36 36 H 1.09008 * 109.46853 * 60.00388 * 18 16 15 37 37 H 1.09003 * 109.47695 * 300.00749 * 18 16 15 38 38 H 1.08998 * 110.48933 * 261.57117 * 21 19 18 39 39 H 1.09001 * 110.48868 * 24.08854 * 21 19 18 40 40 H 1.08997 * 110.75728 * 80.37304 * 22 21 19 41 41 H 1.08999 * 110.75746 * 203.55846 * 22 21 19 42 42 H 1.09001 * 110.47216 * 279.23072 * 23 22 21 43 43 H 1.09001 * 110.53083 * 156.56806 * 23 22 21 44 44 H 1.08999 * 109.58666 * 113.79794 * 27 9 7 45 45 H 1.09005 * 109.58632 * 353.37622 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2785 9 7 1.3724 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2755 11 6 0.5005 -3.3037 -2.4296 12 6 0.8183 -4.6891 -1.8622 13 6 2.0741 -4.6097 -0.9911 14 1 2.9080 -4.2401 -1.5878 15 7 2.3955 -5.9421 -0.4740 16 6 3.6626 -6.2423 -0.1262 17 8 4.5365 -5.4093 -0.2408 18 6 3.9932 -7.6128 0.4063 19 6 5.4881 -7.6901 0.7228 20 1 6.0706 -7.3956 -0.1501 21 6 5.8237 -6.7722 1.9163 22 6 6.9005 -7.5559 2.7072 23 6 6.4148 -9.0226 2.5862 24 6 5.8634 -9.1203 1.1488 25 9 4.7302 -9.9403 1.1254 26 9 6.8441 -9.6333 0.2932 27 6 1.8192 -3.6547 0.1793 28 1 -0.4849 0.8400 0.0004 29 1 0.0984 -1.3255 -1.6683 30 1 -0.6745 -2.6406 -0.7461 31 1 1.3491 -2.9459 -3.0126 32 1 -0.3804 -3.3657 -3.0687 33 1 0.9887 -5.3869 -2.6821 34 1 -0.0207 -5.0358 -1.2590 35 1 1.6965 -6.6083 -0.3820 36 1 3.7405 -8.3640 -0.3420 37 1 3.4198 -7.7978 1.3147 38 1 6.2248 -5.8214 1.5654 39 1 4.9393 -6.6082 2.5320 40 1 7.8814 -7.4354 2.2475 41 1 6.9222 -7.2377 3.7494 42 1 5.6267 -9.2242 3.3117 43 1 7.2468 -9.7133 2.7235 44 1 1.0469 -4.0690 0.8273 45 1 2.7400 -3.5177 0.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008317001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:11 Heat of formation + Delta-G solvation = -136.049367 kcal Electronic energy + Delta-G solvation = -27437.986971 eV Core-core repulsion = 23318.656840 eV Total energy + Delta-G solvation = -4119.330131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.15649 -47.20743 -39.87613 -37.88858 -36.97575 -34.29166 -32.53535 -31.90871 -30.46343 -28.82472 -28.03808 -25.98318 -25.28065 -22.27679 -22.02628 -21.53024 -20.64686 -20.00648 -19.27235 -18.01243 -17.19625 -16.76847 -16.55284 -15.85705 -15.70263 -15.22990 -14.77954 -14.66894 -14.37617 -14.14535 -14.05758 -13.66217 -13.56941 -13.43960 -13.16600 -13.08095 -12.55586 -12.40957 -12.32434 -12.12555 -11.91872 -11.74192 -11.43956 -11.13087 -11.08966 -10.94157 -10.88353 -10.82499 -10.77463 -10.27560 -10.24462 -9.93268 -9.90630 -9.63488 -9.46479 -8.81652 -8.39405 -6.67342 -5.78126 -3.20211 2.82276 3.20114 3.41113 3.45878 3.48738 3.56921 3.71337 3.95997 4.10063 4.52362 4.65065 4.76115 4.84874 4.91508 5.04852 5.10556 5.22125 5.30873 5.35323 5.39273 5.44504 5.51594 5.55793 5.61979 5.67316 5.72546 5.77032 6.01069 6.07947 6.08348 6.16313 6.24063 6.53040 6.60893 6.67599 6.69128 6.83657 6.99233 7.35787 7.64461 7.74236 7.82848 8.42060 8.48334 9.22422 9.84917 10.40528 11.30602 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019887 B = 0.003038 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.621165 B = 9212.928178 C =10182.155003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.085 0.915 15 N -0.723 5.723 16 C 0.511 3.489 17 O -0.534 6.534 18 C -0.134 4.134 19 C -0.113 4.113 20 H 0.109 0.891 21 C -0.112 4.112 22 C -0.125 4.125 23 C -0.160 4.160 24 C 0.282 3.718 25 F -0.199 7.199 26 F -0.199 7.199 27 C 0.144 3.856 28 H 0.254 0.746 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.395 0.605 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.016 0.984 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.709 -19.627 2.408 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.103 0.897 15 N -0.373 5.373 16 C 0.297 3.703 17 O -0.410 6.410 18 C -0.175 4.175 19 C -0.132 4.132 20 H 0.127 0.873 21 C -0.150 4.150 22 C -0.162 4.162 23 C -0.199 4.199 24 C 0.245 3.755 25 F -0.180 7.180 26 F -0.180 7.180 27 C 0.016 3.984 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.228 0.772 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.034 0.966 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.221 -18.878 2.310 20.719 hybrid contribution -0.089 0.214 -0.112 0.257 sum 8.132 -18.664 2.198 20.477 Atomic orbital electron populations 1.70029 1.05247 1.25616 1.53989 1.25017 0.95288 0.98389 1.00881 0.86351 0.78909 0.83192 0.78247 1.20960 1.21636 1.20847 1.19182 0.92790 0.84742 1.41398 0.91619 1.43993 1.35626 1.01054 1.50387 1.20844 0.88562 0.98577 0.87868 1.22181 1.00422 0.95211 1.00135 1.21677 0.96795 0.98559 0.98269 1.21743 0.97751 0.81348 0.97152 0.89652 1.46147 1.09208 1.15861 1.66114 1.20370 0.82801 0.89244 0.77929 1.90724 1.46811 1.50068 1.53437 1.21702 0.96067 0.96137 1.03559 1.22514 0.97165 0.91375 1.02168 0.87320 1.22415 0.99133 0.98972 0.94446 1.22533 0.99418 0.92584 1.01710 1.23368 1.02968 1.00112 0.93402 1.21938 0.75148 0.87571 0.90798 1.92981 1.52354 1.75470 1.97202 1.93012 1.62942 1.88853 1.73144 1.21170 0.97824 0.86814 0.92615 0.93603 0.89260 0.96329 0.92445 0.92734 0.93147 0.92268 0.77194 0.88469 0.88194 0.88941 0.90693 0.90520 0.89914 0.88388 0.89109 0.96595 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 11.19 55.49 0.62 -25.63 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -7.06 9.59 -15.06 -0.14 -7.21 16 8 H 0.07 1.85 7.89 -52.48 -0.41 1.44 16 9 N -0.59 -14.91 2.99 -172.32 -0.52 -15.42 16 10 C 0.17 3.94 5.31 -3.71 -0.02 3.92 16 11 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 12 C -0.11 -1.83 5.35 -26.69 -0.14 -1.98 16 13 C 0.13 2.21 2.60 -67.81 -0.18 2.03 16 14 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 15 N -0.72 -9.91 5.08 -53.70 -0.27 -10.18 16 16 C 0.51 7.22 7.58 -10.99 -0.08 7.13 16 17 O -0.53 -9.67 14.49 5.56 0.08 -9.59 16 18 C -0.13 -1.38 4.18 -27.88 -0.12 -1.49 16 19 C -0.11 -1.18 2.39 -89.50 -0.21 -1.39 16 20 H 0.11 1.29 7.80 -51.93 -0.41 0.88 16 21 C -0.11 -1.13 5.43 -25.08 -0.14 -1.26 16 22 C -0.12 -0.95 6.91 -24.69 -0.17 -1.12 16 23 C -0.16 -1.20 6.41 -25.03 -0.16 -1.36 16 24 C 0.28 2.75 2.53 -25.61 -0.06 2.69 16 25 F -0.20 -2.07 15.45 2.25 0.03 -2.03 16 26 F -0.20 -2.26 17.04 2.25 0.04 -2.22 16 27 C 0.14 3.09 6.09 -3.71 -0.02 3.07 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 29 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.39 4.14 8.60 -40.82 -0.35 3.79 16 36 H 0.10 0.88 7.76 -51.92 -0.40 0.48 16 37 H 0.10 0.86 7.97 -51.93 -0.41 0.45 16 38 H 0.09 1.11 7.66 -51.93 -0.40 0.71 16 39 H 0.07 0.74 7.76 -51.93 -0.40 0.34 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.63 8.12 -51.93 -0.42 0.21 16 43 H 0.09 0.59 8.11 -51.93 -0.42 0.17 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -31.69 359.17 -8.60 -40.28 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.27 Total: 2.16 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.70 Total: 0.25 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.17 Total: -51.24 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.07 Total: -4.25 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.69 -8.60 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008317001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.767 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds