Wall clock time and date at job start Tue Mar 31 2020 10:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99685 * 2 1 4 4 H 1.48503 * 109.47088 * 239.99904 * 3 2 1 5 5 H 1.48494 * 109.47258 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47009 * 120.00492 * 3 2 1 7 7 C 1.38811 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99842 * 197.35644 * 7 2 1 9 9 N 1.36938 * 120.00109 * 17.34745 * 7 2 1 10 10 C 1.46927 * 120.62998 * 27.68138 * 9 7 2 11 11 C 1.53187 * 108.77764 * 126.40868 * 10 9 7 12 12 C 1.53042 * 109.30922 * 54.63531 * 11 10 9 13 13 C 1.53036 * 109.54219 * 298.63482 * 12 11 10 14 14 H 1.08997 * 109.49726 * 301.38279 * 13 12 11 15 15 N 1.46497 * 109.49967 * 181.31700 * 13 12 11 16 16 C 1.34779 * 119.99662 * 154.99598 * 15 13 12 17 17 O 1.21274 * 120.00489 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99818 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.47388 * 180.02562 * 18 16 15 20 20 H 1.08997 * 110.05407 * 306.41795 * 19 18 16 21 21 C 1.54258 * 110.03053 * 67.83524 * 19 18 16 22 22 C 1.54890 * 104.19597 * 142.89568 * 21 19 18 23 23 C 1.54970 * 102.77674 * 322.08673 * 22 21 19 24 24 C 1.53876 * 110.03241 * 185.00666 * 19 18 16 25 25 F 1.39898 * 110.03532 * 359.97438 * 24 19 18 26 26 F 1.39892 * 110.03231 * 121.38276 * 24 19 18 27 27 C 1.46923 * 120.63305 * 207.70026 * 9 7 2 28 28 H 0.96992 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58699 * 6.61861 * 10 9 7 30 30 H 1.09004 * 109.59012 * 246.19949 * 10 9 7 31 31 H 1.09000 * 109.50167 * 294.68576 * 11 10 9 32 32 H 1.09005 * 109.50107 * 174.58401 * 11 10 9 33 33 H 1.09004 * 109.46027 * 178.61541 * 12 11 10 34 34 H 1.08999 * 109.46346 * 58.65866 * 12 11 10 35 35 H 0.96996 * 120.00350 * 334.99753 * 15 13 12 36 36 H 1.09008 * 109.46853 * 60.00388 * 18 16 15 37 37 H 1.09003 * 109.47695 * 300.00749 * 18 16 15 38 38 H 1.08998 * 110.48933 * 261.57117 * 21 19 18 39 39 H 1.09001 * 110.48868 * 24.08854 * 21 19 18 40 40 H 1.08997 * 110.75728 * 80.37304 * 22 21 19 41 41 H 1.08999 * 110.75746 * 203.55846 * 22 21 19 42 42 H 1.09001 * 110.47216 * 279.23072 * 23 22 21 43 43 H 1.09001 * 110.53083 * 156.56806 * 23 22 21 44 44 H 1.08999 * 109.58666 * 113.79794 * 27 9 7 45 45 H 1.09005 * 109.58632 * 353.37622 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2785 9 7 1.3724 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2755 11 6 0.5005 -3.3037 -2.4296 12 6 0.8183 -4.6891 -1.8622 13 6 2.0741 -4.6097 -0.9911 14 1 2.9080 -4.2401 -1.5878 15 7 2.3955 -5.9421 -0.4740 16 6 3.6626 -6.2423 -0.1262 17 8 4.5365 -5.4093 -0.2408 18 6 3.9932 -7.6128 0.4063 19 6 5.4881 -7.6901 0.7228 20 1 6.0706 -7.3956 -0.1501 21 6 5.8237 -6.7722 1.9163 22 6 6.9005 -7.5559 2.7072 23 6 6.4148 -9.0226 2.5862 24 6 5.8634 -9.1203 1.1488 25 9 4.7302 -9.9403 1.1254 26 9 6.8441 -9.6333 0.2932 27 6 1.8192 -3.6547 0.1793 28 1 -0.4849 0.8400 0.0004 29 1 0.0984 -1.3255 -1.6683 30 1 -0.6745 -2.6406 -0.7461 31 1 1.3491 -2.9459 -3.0126 32 1 -0.3804 -3.3657 -3.0687 33 1 0.9887 -5.3869 -2.6821 34 1 -0.0207 -5.0358 -1.2590 35 1 1.6965 -6.6083 -0.3820 36 1 3.7405 -8.3640 -0.3420 37 1 3.4198 -7.7978 1.3147 38 1 6.2248 -5.8214 1.5654 39 1 4.9393 -6.6082 2.5320 40 1 7.8814 -7.4354 2.2475 41 1 6.9222 -7.2377 3.7494 42 1 5.6267 -9.2242 3.3117 43 1 7.2468 -9.7133 2.7235 44 1 1.0469 -4.0690 0.8273 45 1 2.7400 -3.5177 0.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008317001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:10 Heat of formation + Delta-G solvation = -155.232335 kcal Electronic energy + Delta-G solvation = -27438.818807 eV Core-core repulsion = 23318.656840 eV Total energy + Delta-G solvation = -4120.161967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.95292 -48.01259 -41.08629 -39.21407 -38.07630 -35.89420 -34.16543 -32.85734 -32.34672 -30.31136 -28.77843 -27.27865 -26.91410 -23.90227 -23.65097 -22.24430 -21.68457 -21.24618 -20.69746 -18.91488 -18.72436 -18.04197 -17.44220 -17.14690 -16.76808 -16.62266 -16.36042 -15.74076 -15.55998 -15.28779 -15.22288 -14.99974 -14.87618 -14.51955 -14.32188 -14.22259 -14.09519 -14.01890 -13.41949 -13.29411 -13.03082 -12.87142 -12.74409 -12.58955 -12.52801 -12.16405 -12.13292 -11.97604 -11.90603 -11.75979 -11.66664 -11.59372 -11.55954 -11.30927 -10.78273 -10.61409 -10.07654 -8.70346 -7.91452 -5.36828 1.43902 1.46234 1.53642 1.68380 2.11050 2.49650 2.78088 2.96035 3.21118 3.22847 3.31922 3.70516 3.82551 3.90458 4.00519 4.02572 4.12067 4.21847 4.25714 4.28590 4.43417 4.45864 4.47942 4.59979 4.66498 4.71305 4.80999 4.84888 4.91236 5.01937 5.04905 5.08703 5.12065 5.17946 5.23185 5.26966 5.29551 5.48190 5.58614 5.61755 5.75295 6.35689 6.63720 7.11793 7.34379 7.81925 8.31543 9.14111 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019887 B = 0.003038 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.621165 B = 9212.928178 C =10182.155003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.965 3.035 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.270 4.270 8 H 0.054 0.946 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.105 4.105 13 C 0.142 3.858 14 H 0.055 0.945 15 N -0.710 5.710 16 C 0.509 3.491 17 O -0.579 6.579 18 C -0.124 4.124 19 C -0.115 4.115 20 H 0.088 0.912 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.153 4.153 24 C 0.281 3.719 25 F -0.200 7.200 26 F -0.210 7.210 27 C 0.146 3.854 28 H 0.253 0.747 29 H 0.054 0.946 30 H 0.005 0.995 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.416 0.584 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.021 0.979 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.541 -21.910 2.609 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.239 4.239 3 Si 0.793 3.207 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.400 4.400 8 H 0.071 0.929 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.143 4.143 13 C 0.035 3.965 14 H 0.073 0.927 15 N -0.362 5.362 16 C 0.296 3.704 17 O -0.458 6.458 18 C -0.163 4.163 19 C -0.135 4.135 20 H 0.107 0.893 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.191 4.191 24 C 0.245 3.755 25 F -0.181 7.181 26 F -0.191 7.191 27 C 0.019 3.981 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.253 0.747 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.039 0.961 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.038 -21.223 2.511 22.832 hybrid contribution -0.026 0.920 -0.155 0.933 sum 8.011 -20.303 2.356 21.953 Atomic orbital electron populations 1.70158 1.06395 1.26097 1.54824 1.25713 0.96101 1.01203 1.00886 0.85388 0.77738 0.79352 0.78271 1.20615 1.21246 1.20326 1.19372 0.92626 0.86430 1.41573 0.92863 1.44227 1.36005 1.01620 1.51328 1.20717 0.87576 0.98136 0.88971 1.22019 1.01268 0.95419 0.98275 1.21608 0.96057 0.97496 0.99111 1.21213 0.97716 0.82309 0.95257 0.92673 1.45922 1.09961 1.14696 1.65651 1.21090 0.82171 0.90300 0.76828 1.90721 1.48148 1.51832 1.55110 1.21702 0.96182 0.93566 1.04897 1.22479 0.97129 0.92265 1.01599 0.89326 1.22364 0.99996 0.98027 0.94718 1.22520 0.98437 0.92467 1.02216 1.23393 1.03880 0.99899 0.91914 1.22064 0.74989 0.86601 0.91862 1.92976 1.52437 1.75428 1.97265 1.92993 1.63390 1.88919 1.73759 1.21209 0.96412 0.86357 0.94077 0.93836 0.92764 0.97683 0.93567 0.89814 0.89632 0.90560 0.74718 0.86521 0.85780 0.91777 0.90490 0.90616 0.88241 0.86718 0.87777 0.96138 0.95047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 11.19 21.65 0.24 -55.04 16 2 C -0.04 -2.47 4.91 84.86 0.42 -2.06 16 3 Si 0.96 46.17 29.59 68.60 2.03 48.20 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.27 -15.68 9.59 84.03 0.81 -14.88 16 8 H 0.05 3.15 7.89 -2.91 -0.02 3.12 16 9 N -0.61 -31.70 2.99 -699.09 -2.09 -33.79 16 10 C 0.17 8.20 5.31 86.36 0.46 8.66 16 11 C -0.13 -4.68 6.08 30.67 0.19 -4.49 16 12 C -0.10 -3.06 5.35 30.62 0.16 -2.90 16 13 C 0.14 4.89 2.60 45.07 0.12 5.01 16 14 H 0.05 2.28 7.58 -2.39 -0.02 2.26 16 15 N -0.71 -18.19 5.08 -442.19 -2.25 -20.44 16 16 C 0.51 13.94 7.58 87.66 0.66 14.60 16 17 O -0.58 -21.55 14.49 -3.01 -0.04 -21.59 16 18 C -0.12 -2.28 4.18 29.85 0.12 -2.16 16 19 C -0.12 -2.31 2.39 -10.07 -0.02 -2.33 16 20 H 0.09 2.14 7.80 -2.39 -0.02 2.12 16 21 C -0.11 -2.24 5.43 31.67 0.17 -2.07 16 22 C -0.12 -1.62 6.91 31.91 0.22 -1.40 16 23 C -0.15 -1.88 6.41 31.70 0.20 -1.67 16 24 C 0.28 4.94 2.53 31.32 0.08 5.01 16 25 F -0.20 -3.58 15.45 44.97 0.69 -2.89 16 26 F -0.21 -4.49 17.04 44.97 0.77 -3.72 16 27 C 0.15 6.41 6.09 86.36 0.53 6.94 16 28 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.05 2.96 6.04 -2.38 -0.01 2.94 16 30 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.42 7.32 8.60 -92.71 -0.80 6.52 16 36 H 0.12 1.75 7.76 -2.38 -0.02 1.73 16 37 H 0.12 1.74 7.97 -2.39 -0.02 1.72 16 38 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 39 H 0.08 1.46 7.76 -2.39 -0.02 1.44 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.11 1.06 8.12 -2.39 -0.02 1.04 16 43 H 0.10 1.05 8.11 -2.39 -0.02 1.03 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.03 1.50 7.93 -2.38 -0.02 1.48 16 Total: -1.00 -71.98 359.17 3.65 -68.33 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.19 Total: 14.67 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 4.11 Total: 6.27 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -4.10 Total: -109.26 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.04 Total: -21.59 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 1.46 Total: -6.61 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -71.98 3.65 -68.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008317001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.906 kcal (2) G-P(sol) polarization free energy of solvation -71.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds