Wall clock time and date at job start Tue Mar 31 2020 10:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46669 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46948 * 119.99806 * 3 2 1 6 6 H 1.48498 * 109.47140 * 240.00458 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 14 14 H 1.08999 * 109.49861 * 58.58399 * 13 12 11 15 15 N 1.46504 * 109.49469 * 178.68188 * 13 12 11 16 16 C 1.34781 * 119.99843 * 204.83297 * 15 13 12 17 17 O 1.21282 * 119.99677 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99636 * 179.97438 * 16 15 13 19 19 C 1.53008 * 109.46700 * 180.02562 * 18 16 15 20 20 H 1.09001 * 110.01603 * 305.69876 * 19 18 16 21 21 C 1.54260 * 110.03058 * 67.09301 * 19 18 16 22 22 C 1.54970 * 104.15812 * 142.86497 * 21 19 18 23 23 C 1.54888 * 102.77782 * 322.11031 * 22 21 19 24 24 C 1.53874 * 110.03050 * 184.31083 * 19 18 16 25 25 F 1.39898 * 110.03522 * 359.97438 * 24 19 18 26 26 F 1.39906 * 110.03208 * 121.38043 * 24 19 18 27 27 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 28 28 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 30 30 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 31 31 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 32 32 H 1.08998 * 109.38819 * 65.51098 * 11 10 9 33 33 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 34 34 H 1.09001 * 109.44878 * 181.24858 * 12 11 10 35 35 H 0.97000 * 119.99945 * 24.83879 * 15 13 12 36 36 H 1.08998 * 109.47372 * 299.99899 * 18 16 15 37 37 H 1.09000 * 109.47352 * 60.00720 * 18 16 15 38 38 H 1.09001 * 110.48806 * 261.56659 * 21 19 18 39 39 H 1.08997 * 110.48870 * 24.21614 * 21 19 18 40 40 H 1.09000 * 110.76506 * 203.77462 * 22 21 19 41 41 H 1.08995 * 110.72086 * 80.42434 * 22 21 19 42 42 H 1.09001 * 110.48406 * 279.24247 * 23 22 21 43 43 H 1.08996 * 110.60304 * 156.65349 * 23 22 21 44 44 H 1.09004 * 109.58525 * 246.16048 * 27 9 7 45 45 H 1.08995 * 109.58430 * 6.43945 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1038 1.6964 1.2125 6 1 3.1038 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 6 2.0734 -4.6099 0.9881 14 1 2.9048 -4.2393 1.5876 15 7 2.3979 -5.9419 0.4714 16 6 3.6658 -6.2397 0.1245 17 8 4.5381 -5.4051 0.2404 18 6 3.9995 -7.6100 -0.4064 19 6 5.4951 -7.6847 -0.7209 20 1 5.7762 -6.8732 -1.3922 21 6 6.3142 -7.5992 0.5835 22 6 7.5010 -8.5680 0.3500 23 6 6.8431 -9.7344 -0.4284 24 6 5.8313 -9.0414 -1.3643 25 9 4.6734 -9.8184 -1.4770 26 9 6.4015 -8.8449 -2.6267 27 6 1.8216 -3.6548 -0.1828 28 1 -0.4850 0.8400 0.0004 29 1 0.0986 -1.3293 1.6671 30 1 -0.6750 -2.6418 0.7418 31 1 -0.3892 -3.3692 3.0579 32 1 1.3399 -2.9480 3.0083 33 1 -0.0220 -5.0381 1.2488 34 1 0.9832 -5.3888 2.6752 35 1 1.7002 -6.6094 0.3790 36 1 3.7482 -8.3610 0.3425 37 1 3.4271 -7.7970 -1.3150 38 1 6.6757 -6.5831 0.7412 39 1 5.7149 -7.9280 1.4326 40 1 7.9070 -8.9176 1.2992 41 1 8.2756 -8.0912 -0.2506 42 1 6.3291 -10.4083 0.2570 43 1 7.5891 -10.2776 -1.0083 44 1 1.0518 -4.0695 -0.8336 45 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008317021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:22 Heat of formation + Delta-G solvation = -135.854736 kcal Electronic energy + Delta-G solvation = -27395.746487 eV Core-core repulsion = 23276.424796 eV Total energy + Delta-G solvation = -4119.321691 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.14709 -47.19863 -39.88015 -37.90798 -36.98813 -34.28974 -32.53928 -31.92350 -30.46331 -28.83545 -28.06602 -25.99461 -25.27724 -22.26293 -22.04008 -21.56096 -20.65942 -19.99051 -19.28175 -18.00798 -17.20658 -16.75223 -16.56163 -15.86322 -15.63793 -15.34998 -14.72198 -14.68903 -14.42306 -14.16070 -14.01581 -13.61948 -13.56481 -13.39656 -13.32348 -13.03801 -12.53574 -12.41152 -12.34118 -12.14139 -11.93536 -11.75181 -11.48210 -11.16454 -11.05855 -10.98153 -10.89689 -10.81854 -10.76665 -10.26768 -10.24062 -9.93278 -9.90011 -9.63944 -9.46189 -8.81225 -8.38891 -6.66473 -5.77300 -3.19406 2.82207 3.19834 3.42031 3.46483 3.49308 3.56069 3.70377 3.94807 4.08726 4.53051 4.63339 4.73826 4.84755 4.88923 5.02730 5.07536 5.20307 5.29661 5.32934 5.38958 5.42671 5.52873 5.54617 5.61788 5.63268 5.71888 5.75293 5.94766 6.04798 6.07949 6.16168 6.23985 6.52840 6.61165 6.68142 6.69515 6.84454 7.00078 7.36303 7.64868 7.74157 7.83779 8.42301 8.48838 9.23327 9.85739 10.41274 11.31548 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.002936 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.047179 B = 9535.343023 C =10147.279806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.126 3.874 14 H 0.086 0.914 15 N -0.723 5.723 16 C 0.511 3.489 17 O -0.534 6.534 18 C -0.134 4.134 19 C -0.114 4.114 20 H 0.110 0.890 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.161 4.161 24 C 0.282 3.718 25 F -0.199 7.199 26 F -0.197 7.197 27 C 0.143 3.857 28 H 0.254 0.746 29 H 0.089 0.911 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.395 0.605 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.016 0.984 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -21.305 2.606 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.021 3.979 14 H 0.104 0.896 15 N -0.373 5.373 16 C 0.297 3.703 17 O -0.410 6.410 18 C -0.174 4.174 19 C -0.133 4.133 20 H 0.128 0.872 21 C -0.148 4.148 22 C -0.163 4.163 23 C -0.199 4.199 24 C 0.246 3.754 25 F -0.180 7.180 26 F -0.178 7.178 27 C 0.015 3.985 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.228 0.772 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.034 0.966 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.209 -20.531 2.631 22.655 hybrid contribution -0.175 0.360 -0.345 0.528 sum 9.033 -20.172 2.286 22.220 Atomic orbital electron populations 1.70027 1.05248 1.25611 1.53996 1.25015 0.95289 0.98387 1.00880 0.86348 0.78908 0.83186 0.78249 1.21636 1.20968 1.20831 1.19184 0.92763 0.84704 1.41470 0.91618 1.43979 1.35570 1.01053 1.50443 1.20750 0.88619 0.98572 0.87935 1.22108 1.00425 0.95222 1.00158 1.21677 0.96783 0.98550 0.98267 1.21737 0.97693 0.81362 0.97156 0.89638 1.46150 1.09198 1.15848 1.66133 1.20372 0.82794 0.89255 0.77925 1.90726 1.46966 1.49948 1.53391 1.21696 0.96064 0.96144 1.03535 1.22525 0.95867 0.95041 0.99905 0.87173 1.22415 0.95601 1.01451 0.95348 1.22539 0.98122 0.94987 1.00625 1.23350 0.98388 0.99377 0.98737 1.21923 0.81023 0.91678 0.80813 1.92982 1.51535 1.76992 1.96484 1.93023 1.84897 1.95755 1.44166 1.21176 0.97875 0.86823 0.92634 0.93605 0.89280 0.96374 0.92708 0.92469 0.92257 0.93142 0.77193 0.88372 0.88292 0.88962 0.90927 0.90013 0.90434 0.88462 0.89088 0.96580 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 11.19 55.49 0.62 -25.80 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 22.15 29.59 -169.99 -5.03 17.12 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -7.13 9.58 -15.06 -0.14 -7.27 16 8 H 0.07 1.87 7.89 -52.49 -0.41 1.46 16 9 N -0.59 -15.02 3.00 -172.58 -0.52 -15.54 16 10 C 0.17 3.95 5.28 -3.94 -0.02 3.93 16 11 C -0.14 -2.58 6.06 -26.83 -0.16 -2.75 16 12 C -0.11 -1.82 5.36 -26.68 -0.14 -1.96 16 13 C 0.13 2.22 2.60 -67.81 -0.18 2.04 16 14 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 15 N -0.72 -9.90 5.08 -53.69 -0.27 -10.17 16 16 C 0.51 7.21 7.57 -10.98 -0.08 7.13 16 17 O -0.53 -9.66 14.45 5.56 0.08 -9.58 16 18 C -0.13 -1.37 4.18 -27.88 -0.12 -1.49 16 19 C -0.11 -1.19 2.40 -89.50 -0.21 -1.41 16 20 H 0.11 1.35 7.82 -51.93 -0.41 0.94 16 21 C -0.11 -1.04 5.40 -25.03 -0.14 -1.17 16 22 C -0.13 -0.89 6.91 -24.70 -0.17 -1.06 16 23 C -0.16 -1.15 6.40 -25.07 -0.16 -1.31 16 24 C 0.28 2.76 2.53 -25.61 -0.06 2.70 16 25 F -0.20 -2.07 15.46 2.25 0.03 -2.04 16 26 F -0.20 -2.31 17.04 2.25 0.04 -2.27 16 27 C 0.14 3.11 6.09 -3.71 -0.02 3.09 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.39 4.14 8.60 -40.82 -0.35 3.79 16 36 H 0.10 0.80 7.97 -51.93 -0.41 0.38 16 37 H 0.10 0.95 7.79 -51.93 -0.40 0.54 16 38 H 0.09 1.04 7.63 -51.93 -0.40 0.64 16 39 H 0.07 0.64 7.77 -51.93 -0.40 0.23 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 43 H 0.09 0.58 8.11 -51.93 -0.42 0.15 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -32.00 359.10 -8.60 -40.60 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.27 Total: 1.81 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.70 Total: 0.46 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.17 Total: -51.51 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.31 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.00 -8.60 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008317021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.254 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds