Wall clock time and date at job start Tue Mar 31 2020 10:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46669 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46948 * 119.99806 * 3 2 1 6 6 H 1.48498 * 109.47140 * 240.00458 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 14 14 H 1.08999 * 109.49861 * 58.58399 * 13 12 11 15 15 N 1.46504 * 109.49469 * 178.68188 * 13 12 11 16 16 C 1.34781 * 119.99843 * 204.83297 * 15 13 12 17 17 O 1.21282 * 119.99677 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99636 * 179.97438 * 16 15 13 19 19 C 1.53008 * 109.46700 * 180.02562 * 18 16 15 20 20 H 1.09001 * 110.01603 * 305.69876 * 19 18 16 21 21 C 1.54260 * 110.03058 * 67.09301 * 19 18 16 22 22 C 1.54970 * 104.15812 * 142.86497 * 21 19 18 23 23 C 1.54888 * 102.77782 * 322.11031 * 22 21 19 24 24 C 1.53874 * 110.03050 * 184.31083 * 19 18 16 25 25 F 1.39898 * 110.03522 * 359.97438 * 24 19 18 26 26 F 1.39906 * 110.03208 * 121.38043 * 24 19 18 27 27 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 28 28 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 30 30 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 31 31 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 32 32 H 1.08998 * 109.38819 * 65.51098 * 11 10 9 33 33 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 34 34 H 1.09001 * 109.44878 * 181.24858 * 12 11 10 35 35 H 0.97000 * 119.99945 * 24.83879 * 15 13 12 36 36 H 1.08998 * 109.47372 * 299.99899 * 18 16 15 37 37 H 1.09000 * 109.47352 * 60.00720 * 18 16 15 38 38 H 1.09001 * 110.48806 * 261.56659 * 21 19 18 39 39 H 1.08997 * 110.48870 * 24.21614 * 21 19 18 40 40 H 1.09000 * 110.76506 * 203.77462 * 22 21 19 41 41 H 1.08995 * 110.72086 * 80.42434 * 22 21 19 42 42 H 1.09001 * 110.48406 * 279.24247 * 23 22 21 43 43 H 1.08996 * 110.60304 * 156.65349 * 23 22 21 44 44 H 1.09004 * 109.58525 * 246.16048 * 27 9 7 45 45 H 1.08995 * 109.58430 * 6.43945 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1038 1.6964 1.2125 6 1 3.1038 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 6 2.0734 -4.6099 0.9881 14 1 2.9048 -4.2393 1.5876 15 7 2.3979 -5.9419 0.4714 16 6 3.6658 -6.2397 0.1245 17 8 4.5381 -5.4051 0.2404 18 6 3.9995 -7.6100 -0.4064 19 6 5.4951 -7.6847 -0.7209 20 1 5.7762 -6.8732 -1.3922 21 6 6.3142 -7.5992 0.5835 22 6 7.5010 -8.5680 0.3500 23 6 6.8431 -9.7344 -0.4284 24 6 5.8313 -9.0414 -1.3643 25 9 4.6734 -9.8184 -1.4770 26 9 6.4015 -8.8449 -2.6267 27 6 1.8216 -3.6548 -0.1828 28 1 -0.4850 0.8400 0.0004 29 1 0.0986 -1.3293 1.6671 30 1 -0.6750 -2.6418 0.7418 31 1 -0.3892 -3.3692 3.0579 32 1 1.3399 -2.9480 3.0083 33 1 -0.0220 -5.0381 1.2488 34 1 0.9832 -5.3888 2.6752 35 1 1.7002 -6.6094 0.3790 36 1 3.7482 -8.3610 0.3425 37 1 3.4271 -7.7970 -1.3150 38 1 6.6757 -6.5831 0.7412 39 1 5.7149 -7.9280 1.4326 40 1 7.9070 -8.9176 1.2992 41 1 8.2756 -8.0912 -0.2506 42 1 6.3291 -10.4083 0.2570 43 1 7.5891 -10.2776 -1.0083 44 1 1.0518 -4.0695 -0.8336 45 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008317021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:21 Heat of formation + Delta-G solvation = -155.501407 kcal Electronic energy + Delta-G solvation = -27396.598431 eV Core-core repulsion = 23276.424796 eV Total energy + Delta-G solvation = -4120.173635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.95116 -48.01604 -41.08788 -39.22741 -38.07179 -35.89727 -34.17681 -32.85812 -32.36107 -30.32326 -28.76984 -27.29032 -26.91422 -23.91228 -23.65062 -22.23662 -21.68622 -21.23212 -20.70643 -18.91875 -18.72885 -18.04383 -17.44922 -17.11359 -16.74866 -16.66830 -16.38683 -15.79964 -15.48223 -15.33537 -15.14872 -15.04227 -14.86333 -14.52735 -14.33921 -14.23232 -14.16186 -13.94866 -13.43176 -13.28944 -13.04175 -12.87631 -12.75057 -12.57585 -12.54158 -12.17654 -12.11201 -11.98401 -11.89245 -11.75685 -11.65169 -11.59315 -11.56127 -11.31652 -10.78783 -10.62115 -10.07780 -8.71270 -7.92523 -5.38107 1.43129 1.45353 1.52848 1.68127 2.11123 2.48835 2.78867 2.96443 3.21410 3.22556 3.31657 3.69431 3.82390 3.90280 4.01628 4.03160 4.12059 4.22291 4.25580 4.29289 4.43125 4.46482 4.48455 4.58807 4.66670 4.73372 4.80310 4.86006 4.91613 5.01336 5.04905 5.08943 5.12341 5.17549 5.23943 5.27572 5.31242 5.47910 5.58341 5.61146 5.75111 6.34654 6.63689 7.10871 7.34341 7.80831 8.30354 9.13111 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.002936 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.047179 B = 9535.343023 C =10147.279806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.271 4.271 8 H 0.053 0.947 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.143 3.857 14 H 0.058 0.942 15 N -0.710 5.710 16 C 0.509 3.491 17 O -0.578 6.578 18 C -0.123 4.123 19 C -0.118 4.118 20 H 0.082 0.918 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.152 4.152 24 C 0.278 3.722 25 F -0.201 7.201 26 F -0.212 7.212 27 C 0.144 3.856 28 H 0.253 0.747 29 H 0.054 0.946 30 H 0.003 0.997 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.416 0.584 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.018 0.982 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.766 -23.988 3.858 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.239 4.239 3 Si 0.793 3.207 4 H -0.212 1.212 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.401 4.401 8 H 0.070 0.930 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.142 4.142 13 C 0.036 3.964 14 H 0.076 0.924 15 N -0.362 5.362 16 C 0.296 3.704 17 O -0.458 6.458 18 C -0.163 4.163 19 C -0.138 4.138 20 H 0.100 0.900 21 C -0.147 4.147 22 C -0.156 4.156 23 C -0.190 4.190 24 C 0.242 3.758 25 F -0.182 7.182 26 F -0.193 7.193 27 C 0.017 3.983 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.021 0.979 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.253 0.747 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.120 0.880 44 H 0.036 0.964 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 9.244 -23.274 3.881 25.341 hybrid contribution -0.193 1.205 -0.808 1.464 sum 9.051 -22.069 3.072 24.050 Atomic orbital electron populations 1.70158 1.06405 1.26131 1.54781 1.25725 0.96122 1.01240 1.00835 0.85374 0.77732 0.79278 0.78278 1.21170 1.20436 1.20475 1.19371 0.92568 0.86428 1.41753 0.92963 1.44214 1.35993 1.01548 1.51409 1.20633 0.87514 0.98231 0.89054 1.21945 1.01391 0.95386 0.98213 1.21608 0.95875 0.97541 0.99164 1.21202 0.97864 0.82216 0.95092 0.92387 1.45928 1.09935 1.14679 1.65687 1.21091 0.82177 0.90314 0.76806 1.90723 1.48314 1.51691 1.55055 1.21697 0.96000 0.93985 1.04627 1.22507 0.96321 0.94867 1.00092 0.89972 1.22370 0.96611 1.00672 0.95062 1.22532 0.97052 0.94357 1.01695 1.23380 0.97908 0.99302 0.98379 1.22145 0.81641 0.91436 0.80552 1.92974 1.51806 1.76894 1.96486 1.92996 1.85127 1.95868 1.45334 1.21226 0.96225 0.86564 0.94246 0.93806 0.92761 0.97856 0.89700 0.93429 0.90720 0.89265 0.74718 0.85091 0.87262 0.91665 0.89815 0.87805 0.90927 0.86413 0.87977 0.96400 0.95377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 11.19 21.65 0.24 -55.50 16 2 C -0.04 -2.51 4.91 84.86 0.42 -2.09 16 3 Si 0.97 46.57 29.59 68.60 2.03 48.60 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.27 -15.94 9.58 84.03 0.81 -15.14 16 8 H 0.05 3.13 7.89 -2.91 -0.02 3.11 16 9 N -0.61 -32.05 3.00 -699.93 -2.10 -34.15 16 10 C 0.17 8.22 5.28 86.22 0.46 8.68 16 11 C -0.13 -4.62 6.06 30.53 0.19 -4.44 16 12 C -0.10 -3.00 5.36 30.62 0.16 -2.83 16 13 C 0.14 4.93 2.60 45.07 0.12 5.05 16 14 H 0.06 2.36 7.58 -2.39 -0.02 2.35 16 15 N -0.71 -18.18 5.08 -442.15 -2.25 -20.42 16 16 C 0.51 13.94 7.57 87.66 0.66 14.61 16 17 O -0.58 -21.54 14.45 -3.04 -0.04 -21.58 16 18 C -0.12 -2.28 4.18 29.85 0.12 -2.16 16 19 C -0.12 -2.39 2.40 -10.07 -0.02 -2.41 16 20 H 0.08 2.11 7.82 -2.39 -0.02 2.10 16 21 C -0.11 -1.95 5.40 31.70 0.17 -1.78 16 22 C -0.12 -1.44 6.91 31.91 0.22 -1.22 16 23 C -0.15 -1.73 6.40 31.67 0.20 -1.53 16 24 C 0.28 4.97 2.53 31.32 0.08 5.05 16 25 F -0.20 -3.66 15.46 44.97 0.70 -2.97 16 26 F -0.21 -4.82 17.04 44.97 0.77 -4.05 16 27 C 0.14 6.46 6.09 86.36 0.53 6.99 16 28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.05 2.97 6.04 -2.38 -0.01 2.96 16 30 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.42 7.31 8.60 -92.71 -0.80 6.51 16 36 H 0.13 1.61 7.97 -2.39 -0.02 1.59 16 37 H 0.11 1.85 7.79 -2.39 -0.02 1.83 16 38 H 0.06 1.52 7.63 -2.39 -0.02 1.50 16 39 H 0.08 1.29 7.77 -2.39 -0.02 1.27 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.12 0.91 8.12 -2.39 -0.02 0.89 16 43 H 0.10 0.99 8.11 -2.39 -0.02 0.97 16 44 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.03 1.38 7.93 -2.39 -0.02 1.36 16 Total: -1.00 -73.49 359.10 3.64 -69.85 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.19 Total: 13.46 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 4.11 Total: 6.77 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -4.10 Total: -110.08 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.04 Total: -21.58 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 1.46 Total: -7.02 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.49 3.64 -69.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008317021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.653 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds