Wall clock time and date at job start Tue Mar 31 2020 10:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99763 * 2 1 4 4 H 1.48500 * 109.46719 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47282 * 60.00261 * 3 2 1 6 6 H 1.48501 * 109.47414 * 299.99662 * 3 2 1 7 7 C 1.38814 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99398 * 154.90260 * 7 2 1 9 9 N 1.36935 * 120.00333 * 334.90680 * 7 2 1 10 10 C 1.46920 * 120.62780 * 332.40149 * 9 7 2 11 11 C 1.53201 * 108.77527 * 233.58477 * 10 9 7 12 12 C 1.53038 * 109.31528 * 305.37044 * 11 10 9 13 13 C 1.53040 * 109.53836 * 61.35767 * 12 11 10 14 14 H 1.09007 * 109.49446 * 58.59373 * 13 12 11 15 15 N 1.46503 * 109.49777 * 178.68246 * 13 12 11 16 16 C 1.34774 * 120.00064 * 205.00385 * 15 13 12 17 17 O 1.21286 * 119.99964 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99917 * 180.02562 * 16 15 13 19 19 C 1.53001 * 109.46933 * 300.00019 * 18 16 15 20 20 C 1.53004 * 109.47013 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.47084 * 59.99826 * 20 19 18 22 22 F 1.39899 * 109.47267 * 179.97438 * 21 20 19 23 23 F 1.39904 * 109.47112 * 59.99765 * 21 20 19 24 24 C 1.53001 * 109.47338 * 299.99976 * 21 20 19 25 25 C 1.52999 * 109.47103 * 179.97438 * 18 16 15 26 26 C 1.46929 * 120.62841 * 152.12779 * 9 7 2 27 27 H 0.96999 * 119.99912 * 174.25905 * 1 2 3 28 28 H 1.08993 * 109.59373 * 353.37421 * 10 9 7 29 29 H 1.09000 * 109.58462 * 113.65968 * 10 9 7 30 30 H 1.08997 * 109.49165 * 65.32190 * 11 10 9 31 31 H 1.08997 * 109.49737 * 185.38443 * 11 10 9 32 32 H 1.08994 * 109.45962 * 181.38237 * 12 11 10 33 33 H 1.09004 * 109.45814 * 301.36056 * 12 11 10 34 34 H 0.97001 * 119.99920 * 25.01110 * 15 13 12 35 35 H 1.08996 * 109.46824 * 60.00079 * 18 16 15 36 36 H 1.09004 * 109.46918 * 300.00014 * 19 18 16 37 37 H 1.09001 * 109.47213 * 59.99771 * 19 18 16 38 38 H 1.08996 * 109.46762 * 300.00071 * 20 19 18 39 39 H 1.08993 * 109.46919 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47414 * 300.00309 * 24 21 20 41 41 H 1.08995 * 109.47286 * 179.97438 * 24 21 20 42 42 H 1.08999 * 109.47019 * 300.00265 * 25 18 16 43 43 H 1.09004 * 109.47110 * 59.99764 * 25 18 16 44 44 H 1.09000 * 109.58137 * 246.19933 * 26 9 7 45 45 H 1.08994 * 109.58754 * 6.61688 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 1.2125 6 1 1.8915 2.3965 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0138 -1.2465 -0.3962 9 7 1.4225 -2.3319 0.5040 10 6 0.3919 -2.2383 1.5468 11 6 0.8003 -3.1283 2.7250 12 6 1.0565 -4.5502 2.2203 13 6 2.2028 -4.5346 1.2065 14 1 3.0984 -4.1278 1.6762 15 7 2.4682 -5.9004 0.7474 16 6 3.6878 -6.2280 0.2767 17 8 4.5658 -5.3924 0.2335 18 6 3.9606 -7.6328 -0.1960 19 6 3.7342 -8.6120 0.9576 20 6 4.0118 -10.0381 0.4779 21 6 5.4608 -10.1418 -0.0023 22 9 5.7148 -11.4459 -0.4404 23 9 6.3250 -9.8279 1.0522 24 6 5.6871 -9.1625 -1.1559 25 6 5.4092 -7.7367 -0.6771 26 6 1.8064 -3.6603 0.0072 27 1 -0.4850 -0.8358 -0.0840 28 1 0.3045 -1.2050 1.8826 29 1 -0.5645 -2.5745 1.1465 30 1 1.7089 -2.7346 3.1803 31 1 -0.0004 -3.1430 3.4645 32 1 1.3234 -5.1911 3.0605 33 1 0.1549 -4.9339 1.7427 34 1 1.7661 -6.5687 0.7823 35 1 3.2869 -7.8769 -1.0173 36 1 4.4079 -8.3677 1.7790 37 1 2.7020 -8.5378 1.3000 38 1 3.3385 -10.2826 -0.3436 39 1 3.8510 -10.7357 1.2998 40 1 5.0138 -9.4070 -1.9774 41 1 6.7195 -9.2360 -1.4976 42 1 5.5700 -7.0391 -1.4990 43 1 6.0832 -7.4923 0.1440 44 1 0.9635 -4.1125 -0.5154 45 1 2.6525 -3.5655 -0.6734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008657170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:54 Heat of formation + Delta-G solvation = -144.081080 kcal Electronic energy + Delta-G solvation = -27488.155233 eV Core-core repulsion = 23368.476821 eV Total energy + Delta-G solvation = -4119.678412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.25356 -47.23738 -40.19663 -38.01275 -36.91528 -34.55524 -32.64694 -31.50898 -30.78741 -30.36983 -28.44571 -25.11803 -24.05452 -23.52970 -22.34400 -21.84172 -20.69595 -20.01714 -19.29730 -17.74594 -17.39954 -17.15531 -17.05883 -16.57034 -15.83374 -15.08731 -14.58617 -14.46443 -14.27743 -14.15678 -13.89295 -13.76663 -13.60082 -13.53458 -13.33538 -13.23135 -12.84427 -12.70225 -12.60809 -12.30764 -12.11367 -12.04607 -11.84209 -11.62307 -11.18687 -11.05819 -10.74670 -10.70301 -10.51050 -10.38335 -10.11608 -10.08192 -10.00035 -9.56747 -9.33600 -8.92900 -8.30216 -6.89285 -6.06478 -3.22769 2.72909 3.21850 3.41512 3.53720 3.55662 3.70354 3.70898 3.97884 4.00704 4.42746 4.52608 4.60697 4.66791 4.74407 4.84338 4.97872 5.14776 5.19389 5.25277 5.31605 5.34969 5.35553 5.39866 5.53180 5.57270 5.58557 5.62345 5.80489 5.92124 6.00039 6.01771 6.09741 6.35264 6.41386 6.53371 6.56318 6.68256 6.85885 7.04702 7.16394 7.65632 8.04602 8.37444 8.58634 9.11245 9.85124 10.27176 11.22001 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026593 B = 0.002787 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.673873 B =10043.090103 C =10645.868323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.024 4.024 3 Si 1.069 2.931 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.347 4.347 8 H 0.058 0.942 9 N -0.595 5.595 10 C 0.147 3.853 11 C -0.134 4.134 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.087 0.913 15 N -0.722 5.722 16 C 0.515 3.485 17 O -0.531 6.531 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.155 4.155 21 C 0.286 3.714 22 F -0.204 7.204 23 F -0.198 7.198 24 C -0.157 4.157 25 C -0.100 4.100 26 C 0.145 3.855 27 H 0.268 0.732 28 H 0.082 0.918 29 H 0.017 0.983 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.394 0.606 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.015 0.985 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 -22.267 1.529 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.226 4.226 3 Si 0.899 3.101 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.476 4.476 8 H 0.075 0.925 9 N -0.319 5.319 10 C 0.021 3.979 11 C -0.174 4.174 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.105 0.895 15 N -0.373 5.373 16 C 0.300 3.700 17 O -0.407 6.407 18 C -0.133 4.133 19 C -0.149 4.149 20 C -0.193 4.193 21 C 0.250 3.750 22 F -0.185 7.185 23 F -0.179 7.179 24 C -0.196 4.196 25 C -0.138 4.138 26 C 0.018 3.982 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.227 0.773 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.033 0.967 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.570 -19.982 1.573 20.803 hybrid contribution -0.128 -2.260 -0.069 2.265 sum 5.441 -22.242 1.504 22.947 Atomic orbital electron populations 1.70737 1.06589 1.30256 1.48256 1.25854 0.96508 1.01444 0.98781 0.83482 0.74531 0.75483 0.76651 1.21731 1.21645 1.22117 1.20063 0.97668 0.88295 1.41572 0.92456 1.44089 1.45916 1.00987 1.40916 1.21009 0.90307 0.99375 0.87246 1.22052 1.01127 0.94744 0.99443 1.21668 0.97589 0.98380 0.97636 1.21808 0.98808 0.80575 0.96803 0.89520 1.46148 1.12771 1.13289 1.65081 1.20377 0.82481 0.89556 0.77625 1.90752 1.44762 1.51199 1.54005 1.21437 0.99469 0.92976 0.99438 1.21513 1.03539 0.91918 0.97892 1.22508 0.93461 0.99465 1.03908 1.21162 0.89639 0.78977 0.85238 1.93006 1.95363 1.40104 1.90058 1.93009 1.72637 1.92785 1.59470 1.22549 1.05088 0.95092 0.96822 1.21318 0.94954 0.94397 1.03154 1.21255 0.97546 0.86411 0.93031 0.92080 0.90007 0.96488 0.92043 0.92498 0.92828 0.92289 0.77302 0.88069 0.90127 0.89832 0.88450 0.89108 0.88649 0.89085 0.89391 0.89972 0.96737 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.46 12.40 55.49 0.69 -26.77 16 2 C -0.02 -0.69 4.68 -17.43 -0.08 -0.78 16 3 Si 1.07 25.74 29.99 -169.99 -5.10 20.65 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.35 -9.90 9.49 -15.06 -0.14 -10.04 16 8 H 0.06 1.69 7.95 -52.48 -0.42 1.27 16 9 N -0.60 -15.01 2.85 -172.06 -0.49 -15.50 16 10 C 0.15 3.35 4.69 -3.71 -0.02 3.34 16 11 C -0.13 -2.41 6.08 -26.61 -0.16 -2.57 16 12 C -0.11 -1.75 5.35 -26.69 -0.14 -1.89 16 13 C 0.13 2.17 2.62 -67.59 -0.18 1.99 16 14 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 15 N -0.72 -9.46 4.97 -53.47 -0.27 -9.73 16 16 C 0.51 7.13 7.12 -10.98 -0.08 7.05 16 17 O -0.53 -10.01 15.65 5.55 0.09 -9.92 16 18 C -0.11 -1.02 2.53 -91.77 -0.23 -1.25 16 19 C -0.11 -0.81 4.98 -26.73 -0.13 -0.94 16 20 C -0.16 -0.99 5.45 -26.73 -0.15 -1.14 16 21 C 0.29 2.44 2.10 -26.73 -0.06 2.39 16 22 F -0.20 -1.99 17.06 2.25 0.04 -1.95 16 23 F -0.20 -2.15 16.02 2.25 0.04 -2.12 16 24 C -0.16 -1.19 5.45 -26.76 -0.15 -1.33 16 25 C -0.10 -0.97 4.37 -26.76 -0.12 -1.08 16 26 C 0.15 3.12 6.12 -3.49 -0.02 3.10 16 27 H 0.27 8.05 6.71 -40.82 -0.27 7.77 16 28 H 0.08 2.12 6.29 -51.93 -0.33 1.79 16 29 H 0.02 0.39 7.86 -51.93 -0.41 -0.01 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.39 3.77 8.02 -40.82 -0.33 3.44 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.71 7.80 -51.93 -0.41 0.31 16 37 H 0.08 0.47 7.56 -51.93 -0.39 0.08 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.08 0.94 7.76 -51.93 -0.40 0.53 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -33.48 356.30 -8.49 -41.97 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.20 Total: 1.17 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.65 Total: -3.16 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.07 Total: -52.00 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.07 Total: -4.07 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.10 Total: 20.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.48 -8.49 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008657170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.113 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds