Wall clock time and date at job start Tue Mar 31 2020 10:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47072 * 359.97438 * 3 2 1 5 5 H 1.48510 * 109.46921 * 240.00201 * 3 2 1 6 6 H 1.48495 * 109.47073 * 120.00197 * 3 2 1 7 7 C 1.38812 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99331 * 204.22261 * 7 2 1 9 9 N 1.36929 * 120.00293 * 24.22601 * 7 2 1 10 10 C 1.46928 * 120.63070 * 29.21000 * 9 7 2 11 11 C 1.53197 * 108.77597 * 126.36944 * 10 9 7 12 12 C 1.53038 * 109.31086 * 54.63502 * 11 10 9 13 13 C 1.53035 * 109.53842 * 298.63156 * 12 11 10 14 14 H 1.08998 * 109.50310 * 301.38678 * 13 12 11 15 15 N 1.46502 * 109.49819 * 181.31529 * 13 12 11 16 16 C 1.34781 * 119.99932 * 155.00137 * 15 13 12 17 17 O 1.21275 * 119.99708 * 0.02562 * 16 15 13 18 18 C 1.50693 * 119.99832 * 180.02562 * 16 15 13 19 19 C 1.53001 * 109.46985 * 299.99682 * 18 16 15 20 20 C 1.52998 * 109.47226 * 180.02562 * 19 18 16 21 21 C 1.52998 * 109.47417 * 60.00003 * 20 19 18 22 22 F 1.39897 * 109.47371 * 180.02562 * 21 20 19 23 23 F 1.39896 * 109.47070 * 60.00167 * 21 20 19 24 24 C 1.53001 * 109.46920 * 300.00184 * 21 20 19 25 25 C 1.53002 * 109.47103 * 60.00043 * 24 21 20 26 26 C 1.46925 * 120.63008 * 208.92943 * 9 7 2 27 27 H 0.96996 * 120.00148 * 185.77328 * 1 2 3 28 28 H 1.09005 * 109.58934 * 246.15717 * 10 9 7 29 29 H 1.08998 * 109.58509 * 6.58053 * 10 9 7 30 30 H 1.09001 * 109.49527 * 174.59006 * 11 10 9 31 31 H 1.09000 * 109.49405 * 294.64697 * 11 10 9 32 32 H 1.08994 * 109.46226 * 58.65516 * 12 11 10 33 33 H 1.09004 * 109.45685 * 178.63068 * 12 11 10 34 34 H 0.97001 * 120.00068 * 335.00977 * 15 13 12 35 35 H 1.08993 * 109.47387 * 59.99894 * 18 16 15 36 36 H 1.09003 * 109.47152 * 300.00289 * 19 18 16 37 37 H 1.09001 * 109.47121 * 60.00474 * 19 18 16 38 38 H 1.09003 * 109.46935 * 299.99986 * 20 19 18 39 39 H 1.08998 * 109.47558 * 180.02562 * 20 19 18 40 40 H 1.08993 * 109.47232 * 299.99827 * 24 21 20 41 41 H 1.09001 * 109.47121 * 179.97438 * 24 21 20 42 42 H 1.08998 * 109.46729 * 180.02562 * 25 24 21 43 43 H 1.08993 * 109.47253 * 59.99797 * 25 24 21 44 44 H 1.08998 * 109.58820 * 353.42019 * 26 9 7 45 45 H 1.09003 * 109.58698 * 113.84476 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6964 -1.2126 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0190 -1.2435 0.3832 9 7 1.4160 -2.3356 -0.4876 10 6 0.3969 -2.2523 -1.5427 11 6 0.8084 -3.1686 -2.6993 12 6 1.0456 -4.5829 -2.1648 13 6 2.1818 -4.5588 -1.1399 14 1 3.0861 -4.1701 -1.6082 15 7 2.4292 -5.9179 -0.6521 16 6 3.6408 -6.2481 -0.1626 17 8 4.5260 -5.4200 -0.1257 18 6 3.8953 -7.6462 0.3387 19 6 2.9348 -7.9588 1.4878 20 6 3.1936 -9.3780 1.9972 21 6 4.6364 -9.4862 2.4949 22 9 4.8732 -10.7841 2.9601 23 9 4.8406 -8.5730 3.5348 24 6 5.5969 -9.1736 1.3457 25 6 5.3381 -7.7543 0.8364 26 6 1.7899 -3.6586 0.0305 27 1 -0.4850 -0.8357 0.0845 28 1 -0.5664 -2.5740 -1.1466 29 1 0.3229 -1.2248 -1.8989 30 1 0.0150 -3.1902 -3.4464 31 1 1.7251 -2.7921 -3.1532 32 1 0.1356 -4.9488 -1.6896 33 1 1.3150 -5.2424 -2.9898 34 1 1.7210 -6.5801 -0.6814 35 1 3.7360 -8.3574 -0.4717 36 1 3.0942 -7.2475 2.2983 37 1 1.9069 -7.8814 1.1334 38 1 3.0345 -10.0895 1.1869 39 1 2.5090 -9.6009 2.8156 40 1 5.4378 -9.8851 0.5355 41 1 6.6248 -9.2502 1.7003 42 1 6.0221 -7.5319 0.0174 43 1 5.4972 -7.0428 1.6466 44 1 2.6348 -3.5589 0.7119 45 1 0.9426 -4.0975 0.5576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008657172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:58 Heat of formation + Delta-G solvation = -144.213345 kcal Electronic energy + Delta-G solvation = -27593.284465 eV Core-core repulsion = 23473.600317 eV Total energy + Delta-G solvation = -4119.684148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.21586 -47.20134 -40.20337 -38.02317 -36.90851 -34.55298 -32.64702 -31.48100 -30.78067 -30.36188 -28.47345 -25.11402 -24.02422 -23.51360 -22.33797 -21.84647 -20.70636 -19.95529 -19.32078 -17.71617 -17.39864 -17.12469 -17.05138 -16.53876 -15.81840 -15.09333 -14.59971 -14.39394 -14.27542 -14.13992 -13.90999 -13.71666 -13.57711 -13.51315 -13.34269 -13.21223 -12.80894 -12.76772 -12.49369 -12.37532 -12.08065 -12.02865 -11.82274 -11.59585 -11.20931 -11.04521 -10.75007 -10.70088 -10.48604 -10.38844 -10.11647 -10.05678 -9.98120 -9.56012 -9.31839 -8.92632 -8.31049 -6.87704 -6.05305 -3.23643 2.72229 3.22457 3.44643 3.53268 3.55637 3.72972 3.73844 4.00369 4.03343 4.44561 4.55289 4.61321 4.69164 4.75426 4.86141 4.98172 5.15371 5.21457 5.27158 5.30870 5.36119 5.38386 5.41140 5.53571 5.58415 5.61897 5.64935 5.82081 5.92054 6.01301 6.02616 6.10575 6.35320 6.41217 6.53178 6.56572 6.69501 6.86703 7.04447 7.15912 7.65444 8.05475 8.37195 8.59800 9.12231 9.85705 10.28226 11.22941 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.002987 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.823798 B = 9370.352012 C = 9950.281280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.023 4.023 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.348 4.348 8 H 0.056 0.944 9 N -0.594 5.594 10 C 0.148 3.852 11 C -0.134 4.134 12 C -0.114 4.114 13 C 0.125 3.875 14 H 0.086 0.914 15 N -0.722 5.722 16 C 0.514 3.486 17 O -0.531 6.531 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.155 4.155 21 C 0.286 3.714 22 F -0.205 7.205 23 F -0.196 7.196 24 C -0.157 4.157 25 C -0.101 4.101 26 C 0.145 3.855 27 H 0.268 0.732 28 H 0.018 0.982 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.394 0.606 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -22.240 -1.125 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.225 4.225 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.477 4.477 8 H 0.074 0.926 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.174 4.174 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.104 0.896 15 N -0.373 5.373 16 C 0.299 3.701 17 O -0.407 6.407 18 C -0.132 4.132 19 C -0.150 4.150 20 C -0.193 4.193 21 C 0.250 3.750 22 F -0.186 7.186 23 F -0.178 7.178 24 C -0.195 4.195 25 C -0.138 4.138 26 C 0.017 3.983 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.227 0.773 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 5.324 -19.936 -1.110 20.665 hybrid contribution -0.149 -2.226 0.264 2.247 sum 5.175 -22.162 -0.846 22.774 Atomic orbital electron populations 1.70790 1.06562 1.30239 1.48093 1.25877 0.96532 1.01456 0.98599 0.83527 0.74769 0.75921 0.76328 1.21095 1.21992 1.21913 1.20003 0.97163 0.88135 1.42446 0.92597 1.44040 1.46603 1.01140 1.40048 1.21003 0.90533 0.99040 0.87256 1.22062 1.01172 0.94818 0.99375 1.21665 0.97672 0.98368 0.97553 1.21627 0.99020 0.80806 0.96536 0.89598 1.46145 1.13097 1.13963 1.64083 1.20388 0.82523 0.89492 0.77657 1.90748 1.43992 1.51291 1.54683 1.21424 0.97253 0.95428 0.99086 1.21526 0.99614 0.95645 0.98245 1.22504 0.93677 0.99693 1.03426 1.21154 0.97757 0.72017 0.84121 1.93003 1.95866 1.39283 1.90412 1.93019 1.96275 1.67051 1.61412 1.22552 0.99989 0.99838 0.97115 1.21332 0.94968 0.94766 1.02782 1.21088 0.97652 0.86386 0.93125 0.92124 0.96448 0.90163 0.92500 0.92064 0.92262 0.92839 0.77286 0.88236 0.89903 0.89769 0.88553 0.89040 0.88743 0.89111 0.89555 0.89821 0.92274 0.96796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.52 12.45 55.49 0.69 -26.83 16 2 C -0.02 -0.65 4.69 -17.43 -0.08 -0.74 16 3 Si 1.07 25.71 29.98 -169.99 -5.10 20.62 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.35 -9.99 9.48 -15.06 -0.14 -10.13 16 8 H 0.06 1.65 7.94 -52.48 -0.42 1.24 16 9 N -0.59 -15.06 2.84 -172.57 -0.49 -15.55 16 10 C 0.15 3.38 4.70 -3.71 -0.02 3.37 16 11 C -0.13 -2.42 6.08 -26.61 -0.16 -2.58 16 12 C -0.11 -1.75 5.36 -26.69 -0.14 -1.89 16 13 C 0.13 2.18 2.59 -68.03 -0.18 2.00 16 14 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 15 N -0.72 -9.48 4.97 -53.91 -0.27 -9.75 16 16 C 0.51 7.14 7.12 -10.99 -0.08 7.06 16 17 O -0.53 -10.00 15.64 5.56 0.09 -9.92 16 18 C -0.11 -1.01 2.53 -91.77 -0.23 -1.24 16 19 C -0.11 -0.91 4.98 -26.73 -0.13 -1.04 16 20 C -0.15 -1.07 5.45 -26.73 -0.15 -1.21 16 21 C 0.29 2.56 2.10 -26.73 -0.06 2.50 16 22 F -0.20 -2.06 17.06 2.25 0.04 -2.02 16 23 F -0.20 -2.29 16.02 2.25 0.04 -2.25 16 24 C -0.16 -1.19 5.45 -26.73 -0.15 -1.33 16 25 C -0.10 -0.97 4.37 -26.73 -0.12 -1.09 16 26 C 0.14 3.14 6.06 -3.93 -0.02 3.11 16 27 H 0.27 8.07 6.71 -40.82 -0.27 7.79 16 28 H 0.02 0.40 7.86 -51.93 -0.41 0.00 16 29 H 0.08 2.08 6.39 -51.93 -0.33 1.74 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.39 3.78 8.02 -40.82 -0.33 3.46 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.85 7.80 -51.93 -0.41 0.45 16 37 H 0.08 0.55 7.56 -51.93 -0.39 0.16 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 43 H 0.08 1.00 7.76 -51.93 -0.40 0.60 16 44 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -33.67 356.33 -8.49 -42.17 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.21 Total: 1.38 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.65 Total: -3.22 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.07 Total: -52.13 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.07 Total: -4.27 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.10 Total: 20.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.67 -8.49 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008657172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.044 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds