Wall clock time and date at job start Tue Mar 31 2020 11:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99868 * 2 1 4 4 H 1.48503 * 109.47422 * 270.00388 * 3 2 1 5 5 H 1.48500 * 109.47007 * 30.00482 * 3 2 1 6 6 H 1.48506 * 109.47385 * 150.00341 * 3 2 1 7 7 C 1.38810 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00255 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64492 * 359.97438 * 9 7 2 11 11 C 1.54323 * 107.26808 * 178.97495 * 10 9 7 12 12 C 1.55155 * 102.94427 * 337.80485 * 11 10 9 13 13 H 1.09005 * 111.00348 * 153.61244 * 12 11 10 14 14 N 1.46496 * 111.00661 * 277.43008 * 12 11 10 15 15 C 1.34780 * 120.00284 * 201.82187 * 14 12 11 16 16 O 1.21280 * 119.99777 * 359.97438 * 15 14 12 17 17 C 1.50698 * 119.99947 * 180.02562 * 15 14 12 18 18 C 1.53003 * 109.46752 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46915 * 179.97438 * 18 17 15 20 20 C 1.53001 * 109.47328 * 299.99521 * 19 18 17 21 21 C 1.52997 * 109.47328 * 180.02562 * 20 19 18 22 22 F 1.39904 * 109.46820 * 65.00061 * 21 20 19 23 23 F 1.39901 * 109.47234 * 305.00465 * 21 20 19 24 24 C 1.53004 * 109.46738 * 59.99970 * 20 19 18 25 25 C 1.52997 * 109.47236 * 300.00087 * 24 20 19 26 26 C 1.47519 * 125.63655 * 180.02562 * 9 7 2 27 27 H 0.97001 * 119.99970 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.88251 * 59.55736 * 10 9 7 29 29 H 1.08997 * 109.88364 * 298.38968 * 10 9 7 30 30 H 1.08999 * 110.71798 * 219.44197 * 11 10 9 31 31 H 1.09001 * 110.72179 * 96.16943 * 11 10 9 32 32 H 0.97004 * 120.00112 * 21.81411 * 14 12 11 33 33 H 1.08995 * 109.47214 * 60.00111 * 17 15 14 34 34 H 1.08993 * 109.47422 * 59.99650 * 18 17 15 35 35 H 1.09004 * 109.46754 * 299.99305 * 18 17 15 36 36 H 1.09002 * 109.47196 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.47402 * 60.00146 * 19 18 17 38 38 H 1.09001 * 109.46883 * 300.00602 * 20 19 18 39 39 H 1.09002 * 109.47153 * 185.00042 * 21 20 19 40 40 H 1.09001 * 109.46917 * 60.00653 * 24 20 19 41 41 H 1.09004 * 109.46741 * 179.97438 * 24 20 19 42 42 H 1.08993 * 109.47322 * 300.00158 * 25 24 20 43 43 H 1.09002 * 109.47196 * 180.02562 * 25 24 20 44 44 H 1.08999 * 110.37592 * 85.27331 * 26 9 7 45 45 H 1.09003 * 110.41119 * 322.91716 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1374 -2.5327 0.0005 11 6 -0.4483 -4.0441 -0.0263 12 6 0.8516 -4.6560 -0.6121 13 1 0.9834 -5.6855 -0.2791 14 7 0.8572 -4.5753 -2.0748 15 6 1.6380 -5.4070 -2.7926 16 8 2.3363 -6.2218 -2.2275 17 6 1.6441 -5.3236 -4.2973 18 6 2.6082 -6.3688 -4.8620 19 6 2.6140 -6.2846 -6.3896 20 6 1.2042 -6.5518 -6.9205 21 6 1.2101 -6.4681 -8.4482 22 9 2.0026 -7.4970 -8.9684 23 9 1.7310 -5.2320 -8.8456 24 6 0.2401 -5.5065 -6.3558 25 6 0.2343 -5.5908 -4.8281 26 6 1.9343 -3.7318 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5581 -2.0520 -0.8826 29 1 -0.5536 -2.0846 0.9028 30 1 -1.2988 -4.2514 -0.6757 31 1 -0.6308 -4.4182 0.9811 32 1 0.2989 -3.9234 -2.5267 33 1 1.9666 -4.3288 -4.6047 34 1 2.2863 -7.3637 -4.5545 35 1 3.6126 -6.1787 -4.4835 36 1 3.3012 -7.0290 -6.7920 37 1 2.9358 -5.2897 -6.6975 38 1 0.8825 -7.5467 -6.6126 39 1 0.1912 -6.5701 -8.8217 40 1 0.5618 -4.5116 -6.6637 41 1 -0.7643 -5.6966 -6.7344 42 1 -0.0874 -6.5856 -4.5203 43 1 -0.4529 -4.8464 -4.4258 44 1 2.1675 -4.0428 1.0178 45 1 2.8335 -3.7419 -0.6165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016143049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:27 Heat of formation + Delta-G solvation = -142.062706 kcal Electronic energy + Delta-G solvation = -27328.127637 eV Core-core repulsion = 23208.536748 eV Total energy + Delta-G solvation = -4119.590889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.21132 -47.18636 -40.13310 -38.22771 -36.98448 -33.76275 -32.48249 -31.60692 -30.95358 -29.18136 -27.43777 -26.29984 -24.47470 -22.99624 -22.70145 -20.71338 -20.11614 -19.92317 -19.64925 -17.54255 -17.36756 -17.26440 -16.86087 -16.54922 -15.89881 -15.27506 -14.68226 -14.54510 -14.34322 -14.07636 -13.91386 -13.67883 -13.59886 -13.49399 -13.31055 -12.98002 -12.57700 -12.41952 -12.28785 -12.03720 -11.90135 -11.82177 -11.50473 -11.35009 -10.97961 -10.90106 -10.86598 -10.71053 -10.57430 -10.40764 -10.33866 -10.14610 -9.97527 -9.69408 -9.39717 -8.73377 -8.51823 -6.83762 -5.73926 -3.06319 2.92260 3.38417 3.44320 3.44471 3.45866 3.56455 3.92020 4.10886 4.15313 4.48726 4.60727 4.62017 4.78987 4.98850 5.03160 5.07838 5.13977 5.22840 5.25650 5.33061 5.44363 5.46337 5.54889 5.65253 5.71334 5.76754 5.79217 5.82650 5.88636 5.94511 6.11419 6.19969 6.23581 6.36275 6.47288 6.52461 6.68758 7.05705 7.51267 7.53830 7.77434 7.90512 8.22902 8.56119 9.20411 9.80260 10.46088 11.38017 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.003046 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.896020 B = 9190.038534 C = 9983.329457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.153 4.153 12 C 0.128 3.872 13 H 0.087 0.913 14 N -0.703 5.703 15 C 0.517 3.483 16 O -0.551 6.551 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.118 4.118 20 C -0.139 4.139 21 C 0.264 3.736 22 F -0.208 7.208 23 F -0.204 7.204 24 C -0.113 4.113 25 C -0.107 4.107 26 C 0.125 3.875 27 H 0.251 0.749 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.402 0.598 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 -14.112 -14.830 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.052 3.948 11 C -0.192 4.192 12 C 0.022 3.978 13 H 0.105 0.895 14 N -0.353 5.353 15 C 0.303 3.697 16 O -0.429 6.429 17 C -0.131 4.131 18 C -0.131 4.131 19 C -0.156 4.156 20 C -0.158 4.158 21 C 0.210 3.790 22 F -0.189 7.189 23 F -0.185 7.185 24 C -0.151 4.151 25 C -0.144 4.144 26 C -0.002 4.002 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.236 0.764 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.343 -14.449 -14.413 20.543 hybrid contribution 0.260 1.373 -0.236 1.418 sum -2.083 -13.076 -14.649 19.747 Atomic orbital electron populations 1.69947 1.04812 1.24955 1.57474 1.24767 0.95725 0.97570 1.02416 0.86129 0.78632 0.83532 0.77543 1.21663 1.21699 1.20741 1.19060 0.90434 0.82414 1.43354 0.90586 1.44498 1.01455 0.99880 1.87239 1.21161 0.84580 0.87906 1.01194 1.23215 0.95683 1.00088 1.00227 1.22118 0.97318 0.99179 0.79165 0.89498 1.45869 1.44956 1.37259 1.07174 1.20488 0.79364 0.80559 0.89313 1.90662 1.41596 1.37895 1.72732 1.21378 0.97453 1.02201 0.92044 1.21272 0.99751 0.98865 0.93255 1.21594 0.94609 1.03096 0.96277 1.22352 0.99097 1.02701 0.91636 1.22010 0.91922 0.71238 0.93839 1.92976 1.77729 1.59675 1.88526 1.92978 1.89159 1.44142 1.92231 1.21542 0.98588 0.99114 0.95855 1.21470 0.95307 1.02962 0.94701 1.21955 0.94836 0.86360 0.97037 0.93828 0.93637 0.93822 0.91657 0.91015 0.76381 0.88290 0.91095 0.90702 0.90975 0.90842 0.88088 0.87448 0.90496 0.90935 0.91148 0.90626 0.95562 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 10.31 55.49 0.57 -25.84 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.20 10.28 -15.06 -0.15 -6.35 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.05 3.40 -169.99 -0.58 -15.62 16 10 C 0.18 4.04 5.36 -3.06 -0.02 4.02 16 11 C -0.15 -2.65 6.53 -24.90 -0.16 -2.81 16 12 C 0.13 2.25 3.37 -65.78 -0.22 2.02 16 13 H 0.09 1.49 7.64 -51.93 -0.40 1.10 16 14 N -0.70 -11.06 5.10 -51.72 -0.26 -11.32 16 15 C 0.52 7.94 7.15 -10.98 -0.08 7.86 16 16 O -0.55 -10.29 15.67 5.56 0.09 -10.20 16 17 C -0.11 -1.25 2.53 -91.77 -0.23 -1.48 16 18 C -0.09 -1.02 4.49 -26.73 -0.12 -1.14 16 19 C -0.12 -1.07 4.95 -26.73 -0.13 -1.21 16 20 C -0.14 -1.02 2.34 -90.62 -0.21 -1.23 16 21 C 0.26 1.95 4.83 37.16 0.18 2.13 16 22 F -0.21 -1.95 17.02 2.25 0.04 -1.92 16 23 F -0.20 -1.98 16.31 2.25 0.04 -1.95 16 24 C -0.11 -0.81 5.12 -26.73 -0.14 -0.94 16 25 C -0.11 -0.93 5.10 -26.73 -0.14 -1.07 16 26 C 0.13 2.67 6.94 -2.47 -0.02 2.65 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 29 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.40 5.94 8.06 -40.82 -0.33 5.62 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 37 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.60 7.94 -51.93 -0.41 0.18 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.65 7.57 -51.93 -0.39 0.25 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -31.83 360.48 -8.54 -40.37 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.31 Total: 1.99 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.54 Total: 2.11 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.27 Total: -52.79 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.08 Total: -3.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.83 -8.54 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016143049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.692 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds