Wall clock time and date at job start Tue Mar 31 2020 11:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00292 * 2 1 4 4 H 1.48498 * 109.47133 * 270.00334 * 3 2 1 5 5 H 1.48502 * 109.46756 * 30.00343 * 3 2 1 6 6 H 1.48499 * 109.46865 * 150.00178 * 3 2 1 7 7 C 1.38814 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99810 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99873 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.91769 * 322.55498 * 10 9 7 12 12 C 1.55160 * 111.00352 * 86.45339 * 10 9 7 13 13 C 1.54329 * 103.10138 * 153.66377 * 12 10 9 14 14 N 1.47027 * 107.26966 * 337.71861 * 13 12 10 15 15 C 1.34779 * 125.64650 * 178.97419 * 14 13 12 16 16 O 1.21280 * 119.99794 * 174.73377 * 15 14 13 17 17 C 1.50698 * 119.99668 * 354.74327 * 15 14 13 18 18 C 1.53001 * 109.46942 * 274.39614 * 17 15 14 19 19 C 1.53004 * 109.47232 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47315 * 60.00078 * 19 18 17 21 21 C 1.52991 * 109.47289 * 180.02562 * 20 19 18 22 22 F 1.39900 * 109.47588 * 64.99757 * 21 20 19 23 23 F 1.39903 * 109.47243 * 185.00106 * 21 20 19 24 24 C 1.53001 * 109.46906 * 300.00121 * 20 19 18 25 25 C 1.53000 * 109.47091 * 154.40007 * 17 15 14 26 26 C 1.47424 * 108.70261 * 358.94117 * 14 13 12 27 27 H 0.96996 * 119.99434 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00095 * 359.97438 * 9 7 2 29 29 H 1.09001 * 110.71960 * 35.21524 * 12 10 9 30 30 H 1.08991 * 110.72315 * 272.11529 * 12 10 9 31 31 H 1.08993 * 109.87981 * 97.13535 * 13 12 10 32 32 H 1.09001 * 109.88271 * 218.30476 * 13 12 10 33 33 H 1.08991 * 109.47712 * 34.39754 * 17 15 14 34 34 H 1.09004 * 109.47125 * 300.00239 * 18 17 15 35 35 H 1.08995 * 109.47346 * 60.00185 * 18 17 15 36 36 H 1.09004 * 109.46892 * 299.99930 * 19 18 17 37 37 H 1.09004 * 109.46818 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47031 * 59.99336 * 20 19 18 39 39 H 1.09009 * 109.46835 * 304.99771 * 21 20 19 40 40 H 1.08997 * 109.47442 * 299.99807 * 24 20 19 41 41 H 1.09004 * 109.47379 * 179.97438 * 24 20 19 42 42 H 1.08995 * 109.46860 * 299.99751 * 25 17 15 43 43 H 1.09004 * 109.47262 * 59.99586 * 25 17 15 44 44 H 1.09004 * 110.36293 * 142.96845 * 26 14 13 45 45 H 1.08998 * 110.36532 * 265.28493 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 2.9525 -3.5892 -0.6217 12 6 2.4136 -4.0950 1.4426 13 6 2.5202 -5.6302 1.3265 14 7 1.7475 -6.0331 0.1424 15 6 1.6089 -7.2939 -0.3134 16 8 0.8688 -7.5235 -1.2464 17 6 2.3734 -8.4183 0.3365 18 6 3.7666 -8.5157 -0.2884 19 6 4.5426 -9.6577 0.3709 20 6 3.7937 -10.9744 0.1553 21 6 4.5693 -12.1162 0.8151 22 9 4.5912 -11.9255 2.2009 23 9 3.9462 -13.3339 0.5217 24 6 2.4005 -10.8770 0.7802 25 6 1.6247 -9.7352 0.1213 26 6 1.1488 -4.8298 -0.4633 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3881 -0.0016 29 1 1.6210 -3.8149 2.1365 30 1 3.3657 -3.6646 1.7528 31 1 3.5636 -5.9211 1.2049 32 1 2.1039 -6.0992 2.2181 33 1 2.4672 -8.2241 1.4048 34 1 3.6728 -8.7100 -1.3569 35 1 4.2999 -7.5776 -0.1352 36 1 4.6363 -9.4638 1.4395 37 1 5.5349 -9.7273 -0.0746 38 1 3.6998 -11.1682 -0.9132 39 1 5.5906 -12.1295 0.4340 40 1 2.4943 -10.6831 1.8487 41 1 1.8668 -11.8149 0.6262 42 1 0.6323 -9.6658 0.5664 43 1 1.5310 -9.9295 -0.9472 44 1 1.1545 -4.9094 -1.5504 45 1 0.1318 -4.6872 -0.0980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019718591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:23 Heat of formation + Delta-G solvation = -150.091882 kcal Electronic energy + Delta-G solvation = -26894.047219 eV Core-core repulsion = 22774.108159 eV Total energy + Delta-G solvation = -4119.939060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.29624 -47.27078 -40.35769 -38.39762 -37.07241 -34.18019 -32.51837 -31.45414 -31.12359 -29.55854 -28.01858 -26.39269 -23.94798 -23.12353 -23.00168 -22.01278 -20.36903 -20.07571 -18.95279 -17.64147 -17.44864 -17.35874 -17.03806 -16.90840 -15.99044 -15.56429 -14.93322 -14.60327 -14.46356 -14.13150 -13.90824 -13.75925 -13.66334 -13.54283 -13.23656 -13.12028 -12.90506 -12.68196 -12.60570 -12.36876 -12.01977 -11.96537 -11.75042 -11.55513 -11.44606 -11.19256 -10.95133 -10.86298 -10.73705 -10.69480 -10.50644 -10.33028 -10.08680 -9.80548 -9.55757 -8.99559 -8.43537 -7.08485 -5.85615 -3.16433 2.70881 3.09741 3.38595 3.42332 3.44025 3.45572 3.83161 4.01103 4.05968 4.44440 4.50602 4.52959 4.55545 4.84374 4.92330 4.95919 5.01704 5.02132 5.07401 5.15237 5.23366 5.29368 5.43970 5.47141 5.53920 5.55171 5.63412 5.65794 5.72220 5.80102 5.82257 5.93334 5.96733 6.09807 6.12254 6.21271 6.34619 6.52515 6.57407 6.87589 7.61788 7.70978 8.28481 8.32076 9.43336 9.97338 10.32134 11.36585 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.034471 B = 0.002328 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.087550 B =12026.042709 C =12437.341690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.173 3.827 11 H 0.062 0.938 12 C -0.156 4.156 13 C 0.101 3.899 14 N -0.612 5.612 15 C 0.529 3.471 16 O -0.546 6.546 17 C -0.103 4.103 18 C -0.104 4.104 19 C -0.112 4.112 20 C -0.140 4.140 21 C 0.264 3.736 22 F -0.204 7.204 23 F -0.207 7.207 24 C -0.116 4.116 25 C -0.099 4.099 26 C 0.098 3.902 27 H 0.257 0.743 28 H 0.386 0.614 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.467 -23.865 3.081 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.061 3.939 11 H 0.080 0.920 12 C -0.197 4.197 13 C -0.022 4.022 14 N -0.346 5.346 15 C 0.318 3.682 16 O -0.423 6.423 17 C -0.124 4.124 18 C -0.142 4.142 19 C -0.149 4.149 20 C -0.159 4.159 21 C 0.210 3.790 22 F -0.186 7.186 23 F -0.188 7.188 24 C -0.154 4.154 25 C -0.137 4.137 26 C -0.025 4.025 27 H 0.067 0.933 28 H 0.221 0.779 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.148 -23.911 2.575 26.102 hybrid contribution 0.109 0.913 0.261 0.956 sum 10.257 -22.998 2.836 25.340 Atomic orbital electron populations 1.69664 1.05164 1.25920 1.56974 1.24782 0.95541 0.97842 1.02510 0.86164 0.78629 0.83620 0.77583 1.21608 1.21712 1.20682 1.19195 0.91027 0.83754 1.43579 0.90987 1.42252 1.05847 0.99327 1.88117 1.21364 0.94109 0.85612 0.92828 0.91962 1.23420 1.02861 0.91283 1.02120 1.22118 0.95208 0.97498 0.87372 1.48495 1.50803 1.06261 1.29048 1.20230 0.82095 0.82351 0.83548 1.90688 1.38921 1.83054 1.29652 1.21313 0.95887 0.93995 1.01228 1.21407 0.93416 0.98865 1.00537 1.21534 0.98442 0.92702 1.02247 1.22359 0.96936 0.94404 1.02174 1.22005 0.98089 0.81580 0.77305 1.92972 1.97637 1.95175 1.32787 1.92980 1.85357 1.47429 1.93072 1.21563 0.93736 0.99529 1.00564 1.21338 0.98295 0.91703 1.02318 1.22604 0.97591 0.83733 0.98549 0.93324 0.77930 0.90557 0.90731 0.91876 0.92059 0.89062 0.90889 0.90656 0.90592 0.90816 0.87932 0.87381 0.90894 0.90853 0.91145 0.90457 0.90713 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -17.15 5.28 -51.10 -0.27 -17.42 16 10 C 0.17 3.25 3.71 -65.52 -0.24 3.00 16 11 H 0.06 1.19 8.13 -51.93 -0.42 0.76 16 12 C -0.16 -2.44 6.63 -24.89 -0.17 -2.60 16 13 C 0.10 1.26 6.09 -3.06 -0.02 1.24 16 14 N -0.61 -9.06 3.33 -170.21 -0.57 -9.62 16 15 C 0.53 7.73 6.95 -10.99 -0.08 7.65 16 16 O -0.55 -10.00 16.40 5.56 0.09 -9.91 16 17 C -0.10 -1.04 2.09 -91.77 -0.19 -1.24 16 18 C -0.10 -0.86 5.19 -26.73 -0.14 -1.00 16 19 C -0.11 -0.67 5.12 -26.73 -0.14 -0.81 16 20 C -0.14 -0.89 2.35 -90.62 -0.21 -1.10 16 21 C 0.26 1.68 4.83 37.15 0.18 1.86 16 22 F -0.20 -1.72 16.30 2.25 0.04 -1.68 16 23 F -0.21 -1.77 17.02 2.25 0.04 -1.73 16 24 C -0.12 -0.91 4.95 -26.75 -0.13 -1.04 16 25 C -0.10 -0.96 4.74 -26.75 -0.13 -1.08 16 26 C 0.10 1.72 6.53 -2.27 -0.01 1.70 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.39 9.94 7.73 -40.82 -0.32 9.63 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.65 7.59 -51.93 -0.39 0.26 16 32 H 0.06 0.67 8.00 -51.93 -0.42 0.26 16 33 H 0.09 0.82 7.29 -51.93 -0.38 0.45 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.62 7.59 -51.93 -0.39 0.23 16 36 H 0.08 0.47 7.94 -51.93 -0.41 0.05 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.07 0.58 7.68 -51.93 -0.40 0.18 16 41 H 0.07 0.58 7.94 -51.93 -0.41 0.16 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 44 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 45 H 0.07 1.25 8.01 -51.93 -0.42 0.83 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -31.45 363.90 -8.30 -39.75 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.29 Total: 5.54 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.52 Total: -0.44 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.11 Total: -53.72 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.45 -8.30 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019718591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.338 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds