Wall clock time and date at job start Tue Mar 31 2020 11:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 109.47055 * 2 1 4 4 O 1.21289 * 120.00113 * 239.99867 * 3 2 1 5 5 N 1.34773 * 120.00316 * 60.00139 * 3 2 1 6 6 C 1.46501 * 120.00122 * 179.97438 * 5 3 2 7 7 H 1.08993 * 112.90929 * 336.25213 * 6 5 3 8 8 C 1.53962 * 113.66387 * 107.55425 * 6 5 3 9 9 C 1.53782 * 87.11063 * 139.88885 * 8 6 5 10 10 H 1.09001 * 113.61250 * 220.08565 * 9 8 6 11 11 N 1.46496 * 113.68971 * 89.19569 * 9 8 6 12 12 C 1.36942 * 119.99797 * 107.46371 * 11 9 8 13 13 H 1.08003 * 120.00165 * 359.97438 * 12 11 9 14 14 C 1.38811 * 120.00074 * 180.02562 * 12 11 9 15 15 N 1.31619 * 120.00077 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00089 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46829 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47044 * 120.00088 * 16 14 12 19 19 H 1.48500 * 109.47170 * 240.00076 * 16 14 12 20 20 C 1.53781 * 87.08260 * 334.63747 * 9 8 6 21 21 C 1.53000 * 109.47009 * 120.00211 * 2 1 3 22 22 C 1.53004 * 109.47056 * 179.97438 * 21 2 1 23 23 C 1.52995 * 109.47047 * 300.00311 * 22 21 2 24 24 F 1.39905 * 109.47120 * 299.99507 * 23 22 21 25 25 F 1.39902 * 109.47144 * 179.97438 * 23 22 21 26 26 C 1.52999 * 109.47790 * 59.99788 * 23 22 21 27 27 C 1.53003 * 109.46732 * 240.00080 * 2 1 3 28 28 H 1.09002 * 109.46940 * 59.99686 * 1 2 3 29 29 H 1.09000 * 109.47377 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46913 * 299.99809 * 1 2 3 31 31 H 0.97002 * 120.00080 * 0.02562 * 5 3 2 32 32 H 1.08997 * 113.53543 * 25.33559 * 8 6 5 33 33 H 1.08998 * 113.73879 * 254.47157 * 8 6 5 34 34 H 0.97001 * 120.00688 * 287.46664 * 11 9 8 35 35 H 0.96997 * 120.00180 * 180.02562 * 15 14 12 36 36 H 1.09002 * 113.61445 * 139.98212 * 20 9 8 37 37 H 1.09002 * 113.61408 * 270.79943 * 20 9 8 38 38 H 1.08999 * 109.47267 * 299.99763 * 21 2 1 39 39 H 1.09000 * 109.47397 * 59.99589 * 21 2 1 40 40 H 1.09000 * 109.46905 * 179.97438 * 22 21 2 41 41 H 1.09008 * 109.46778 * 59.99965 * 22 21 2 42 42 H 1.08993 * 109.47267 * 180.02562 * 26 23 22 43 43 H 1.09003 * 109.46706 * 59.99417 * 26 23 22 44 44 H 1.09008 * 109.47253 * 299.99834 * 27 2 1 45 45 H 1.08992 * 109.47519 * 59.99949 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.7296 1.8175 -0.9096 5 7 1.7068 2.2506 1.0108 6 6 2.1956 3.6317 1.0110 7 1 3.1005 3.7616 0.4176 8 6 1.1037 4.6737 0.7069 9 6 1.7504 5.5529 1.7903 10 1 1.0278 6.0741 2.4183 11 7 2.8029 6.4356 1.2813 12 6 2.5762 7.7821 1.1770 13 1 1.6213 8.1932 1.4696 14 6 3.5733 8.6185 0.6942 15 7 4.7368 8.1174 0.3370 16 14 3.2643 10.4553 0.5526 17 1 1.8872 10.7627 1.0156 18 1 4.2449 11.1884 1.3929 19 1 3.4150 10.8749 -0.8639 20 6 2.2850 4.2533 2.4148 21 6 2.0400 -0.7213 1.2492 22 6 3.5700 -0.7219 1.2489 23 6 4.0795 -1.4434 -0.0004 24 9 3.6127 -2.7623 -0.0001 25 9 5.4785 -1.4434 -0.0010 26 6 3.5695 -0.7221 -1.2496 27 6 2.0399 -0.7213 -1.2493 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.1494 1.9333 1.7385 32 1 0.0984 4.3373 0.9602 33 1 1.1684 5.0973 -0.2953 34 1 3.6604 6.0664 1.0180 35 1 5.4337 8.7019 0.0000 36 1 3.3045 4.3369 2.7912 37 1 1.6031 3.8027 3.1361 38 1 1.6767 -0.2075 2.1392 39 1 1.6766 -1.7489 1.2493 40 1 3.9333 -1.2353 2.1391 41 1 3.9337 0.3058 1.2487 42 1 3.9321 -1.2365 -2.1395 43 1 3.9332 0.3054 -1.2497 44 1 1.6766 -1.7490 -1.2493 45 1 1.6766 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020307689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:43 Heat of formation + Delta-G solvation = -123.313770 kcal Electronic energy + Delta-G solvation = -27772.724206 eV Core-core repulsion = 23653.946332 eV Total energy + Delta-G solvation = -4118.777874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.08341 -47.06515 -40.81649 -38.62253 -36.72567 -34.23812 -32.98521 -32.06098 -31.24986 -29.66412 -26.43124 -25.14479 -24.88005 -23.55739 -23.45677 -22.18697 -21.18328 -19.72389 -18.61581 -17.55043 -17.38921 -17.31197 -16.39728 -16.24235 -15.75272 -15.43610 -14.93217 -14.56430 -14.40956 -14.08024 -13.90861 -13.75115 -13.49404 -13.24378 -13.09081 -13.02127 -12.78493 -12.63742 -12.57701 -12.28955 -12.15746 -12.01817 -11.82820 -11.69613 -11.59087 -11.19815 -11.03705 -10.90436 -10.80781 -10.36152 -10.28974 -10.15283 -9.90170 -9.74058 -9.40731 -8.94193 -8.72914 -7.02999 -5.81451 -3.11684 2.63591 3.21495 3.41340 3.46724 3.49347 3.61229 3.87794 4.09012 4.16965 4.35560 4.45610 4.54200 4.75087 4.77690 4.84035 5.01810 5.04536 5.18696 5.22556 5.27903 5.34989 5.37250 5.43684 5.44821 5.45754 5.56329 5.67367 5.75200 5.81103 5.84417 5.85729 5.95157 6.03255 6.05714 6.21640 6.34742 6.58307 6.69139 6.74985 6.99620 7.60412 7.67828 8.30092 8.36659 9.47578 10.03603 10.37387 11.40732 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022163 B = 0.002932 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.084269 B = 9546.670145 C =10076.786123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C 0.519 3.481 4 O -0.532 6.532 5 N -0.714 5.714 6 C 0.124 3.876 7 H 0.113 0.887 8 C -0.183 4.183 9 C 0.172 3.828 10 H 0.068 0.932 11 N -0.705 5.705 12 C -0.246 4.246 13 H 0.073 0.927 14 C -0.011 4.011 15 N -0.929 5.929 16 Si 0.909 3.091 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.164 4.164 21 C -0.105 4.105 22 C -0.162 4.162 23 C 0.288 3.712 24 F -0.204 7.204 25 F -0.202 7.202 26 C -0.172 4.172 27 C -0.090 4.090 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.395 0.605 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.076 0.924 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 -22.372 2.627 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C 0.304 3.696 4 O -0.409 6.409 5 N -0.363 5.363 6 C 0.020 3.980 7 H 0.131 0.869 8 C -0.225 4.225 9 C 0.058 3.942 10 H 0.086 0.914 11 N -0.344 5.344 12 C -0.377 4.377 13 H 0.091 0.909 14 C -0.207 4.207 15 N -0.577 5.577 16 Si 0.739 3.261 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.204 4.204 21 C -0.142 4.142 22 C -0.200 4.200 23 C 0.252 3.748 24 F -0.185 7.185 25 F -0.183 7.183 26 C -0.210 4.210 27 C -0.128 4.128 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.229 0.771 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.142 0.858 44 H 0.095 0.905 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.151 -21.887 1.971 23.439 hybrid contribution 0.061 0.526 0.122 0.543 sum -8.090 -21.362 2.092 22.938 Atomic orbital electron populations 1.21821 0.91826 1.03013 1.02994 1.20963 0.97634 0.92977 0.97426 1.20409 0.80103 0.86876 0.82171 1.90658 1.37688 1.76968 1.35587 1.46146 1.52887 1.12735 1.24565 1.22682 0.99029 0.77895 0.98349 0.86872 1.24335 0.97076 0.98143 1.02995 1.20903 0.91643 0.88660 0.92970 0.91424 1.42199 1.12815 1.03793 1.75558 1.19311 0.98638 0.83215 1.36520 0.90886 1.24783 0.96053 0.98254 1.01623 1.69673 1.04415 1.34312 1.49296 0.86101 0.77313 0.85308 0.77338 1.20479 1.21797 1.21790 1.23895 1.02229 0.98856 0.95454 1.21586 0.93588 1.02073 0.96979 1.22548 0.97687 1.03022 0.96793 1.21155 0.75222 0.79228 0.99164 1.92967 1.88390 1.39384 1.97744 1.93009 1.30996 1.96612 1.97715 1.22815 0.97807 1.04776 0.95571 1.21327 0.93771 1.00526 0.97190 0.91586 0.91225 0.91811 0.77112 0.91349 0.91081 0.77986 0.93392 0.90895 0.90401 0.89966 0.89670 0.89130 0.88578 0.89739 0.85829 0.90536 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.37 37.16 0.31 -0.63 16 2 C -0.09 -0.77 0.62 -155.66 -0.10 -0.86 16 3 C 0.52 6.50 4.97 -10.99 -0.05 6.44 16 4 O -0.53 -8.93 13.26 5.55 0.07 -8.86 16 5 N -0.71 -8.29 5.14 -52.93 -0.27 -8.56 16 6 C 0.12 1.91 4.13 -67.02 -0.28 1.63 16 7 H 0.11 2.15 7.47 -51.93 -0.39 1.76 16 8 C -0.18 -3.06 7.69 -25.82 -0.20 -3.26 16 9 C 0.17 3.23 4.56 -67.12 -0.31 2.92 16 10 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 11 N -0.71 -17.32 5.31 -52.64 -0.28 -17.60 16 12 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16 13 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 14 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 15 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 16 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 C -0.16 -2.45 7.57 -25.92 -0.20 -2.64 16 21 C -0.10 -0.77 4.51 -26.73 -0.12 -0.89 16 22 C -0.16 -1.53 5.23 -26.73 -0.14 -1.67 16 23 C 0.29 3.23 2.10 -26.73 -0.06 3.17 16 24 F -0.20 -2.29 16.02 2.25 0.04 -2.26 16 25 F -0.20 -2.69 17.06 2.25 0.04 -2.65 16 26 C -0.17 -1.92 5.16 -26.75 -0.14 -2.06 16 27 C -0.09 -0.85 4.25 -26.75 -0.11 -0.97 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 7.56 -51.93 -0.39 -0.03 16 31 H 0.39 3.36 7.56 -40.82 -0.31 3.05 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.39 10.17 7.90 -40.82 -0.32 9.85 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 38 H 0.08 0.47 7.56 -51.93 -0.39 0.08 16 39 H 0.08 0.55 7.80 -51.93 -0.41 0.14 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 1.05 7.22 -51.92 -0.37 0.67 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.12 1.69 5.51 -51.93 -0.29 1.41 16 44 H 0.08 0.61 7.80 -51.92 -0.41 0.20 16 45 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -31.84 359.21 -7.97 -39.81 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.04 Total: 10.91 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.63 Total: -6.10 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.17 Total: -53.43 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.07 Total: -8.86 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.07 Total: -4.91 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.84 -7.97 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020307689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.504 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds