Wall clock time and date at job start Tue Mar 31 2020 11:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 109.47055 * 2 1 4 4 O 1.21289 * 120.00113 * 239.99867 * 3 2 1 5 5 N 1.34773 * 120.00316 * 60.00139 * 3 2 1 6 6 C 1.46501 * 120.00122 * 179.97438 * 5 3 2 7 7 H 1.08993 * 112.90929 * 336.25213 * 6 5 3 8 8 C 1.53962 * 113.66387 * 107.55425 * 6 5 3 9 9 C 1.53782 * 87.11063 * 139.88885 * 8 6 5 10 10 H 1.09001 * 113.61250 * 220.08565 * 9 8 6 11 11 N 1.46496 * 113.68971 * 89.19569 * 9 8 6 12 12 C 1.36942 * 119.99797 * 107.46371 * 11 9 8 13 13 H 1.08003 * 120.00165 * 359.97438 * 12 11 9 14 14 C 1.38811 * 120.00074 * 180.02562 * 12 11 9 15 15 N 1.31619 * 120.00077 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00089 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46829 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47044 * 120.00088 * 16 14 12 19 19 H 1.48500 * 109.47170 * 240.00076 * 16 14 12 20 20 C 1.53781 * 87.08260 * 334.63747 * 9 8 6 21 21 C 1.53000 * 109.47009 * 120.00211 * 2 1 3 22 22 C 1.53004 * 109.47056 * 179.97438 * 21 2 1 23 23 C 1.52995 * 109.47047 * 300.00311 * 22 21 2 24 24 F 1.39905 * 109.47120 * 299.99507 * 23 22 21 25 25 F 1.39902 * 109.47144 * 179.97438 * 23 22 21 26 26 C 1.52999 * 109.47790 * 59.99788 * 23 22 21 27 27 C 1.53003 * 109.46732 * 240.00080 * 2 1 3 28 28 H 1.09002 * 109.46940 * 59.99686 * 1 2 3 29 29 H 1.09000 * 109.47377 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46913 * 299.99809 * 1 2 3 31 31 H 0.97002 * 120.00080 * 0.02562 * 5 3 2 32 32 H 1.08997 * 113.53543 * 25.33559 * 8 6 5 33 33 H 1.08998 * 113.73879 * 254.47157 * 8 6 5 34 34 H 0.97001 * 120.00688 * 287.46664 * 11 9 8 35 35 H 0.96997 * 120.00180 * 180.02562 * 15 14 12 36 36 H 1.09002 * 113.61445 * 139.98212 * 20 9 8 37 37 H 1.09002 * 113.61408 * 270.79943 * 20 9 8 38 38 H 1.08999 * 109.47267 * 299.99763 * 21 2 1 39 39 H 1.09000 * 109.47397 * 59.99589 * 21 2 1 40 40 H 1.09000 * 109.46905 * 179.97438 * 22 21 2 41 41 H 1.09008 * 109.46778 * 59.99965 * 22 21 2 42 42 H 1.08993 * 109.47267 * 180.02562 * 26 23 22 43 43 H 1.09003 * 109.46706 * 59.99417 * 26 23 22 44 44 H 1.09008 * 109.47253 * 299.99834 * 27 2 1 45 45 H 1.08992 * 109.47519 * 59.99949 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.7296 1.8175 -0.9096 5 7 1.7068 2.2506 1.0108 6 6 2.1956 3.6317 1.0110 7 1 3.1005 3.7616 0.4176 8 6 1.1037 4.6737 0.7069 9 6 1.7504 5.5529 1.7903 10 1 1.0278 6.0741 2.4183 11 7 2.8029 6.4356 1.2813 12 6 2.5762 7.7821 1.1770 13 1 1.6213 8.1932 1.4696 14 6 3.5733 8.6185 0.6942 15 7 4.7368 8.1174 0.3370 16 14 3.2643 10.4553 0.5526 17 1 1.8872 10.7627 1.0156 18 1 4.2449 11.1884 1.3929 19 1 3.4150 10.8749 -0.8639 20 6 2.2850 4.2533 2.4148 21 6 2.0400 -0.7213 1.2492 22 6 3.5700 -0.7219 1.2489 23 6 4.0795 -1.4434 -0.0004 24 9 3.6127 -2.7623 -0.0001 25 9 5.4785 -1.4434 -0.0010 26 6 3.5695 -0.7221 -1.2496 27 6 2.0399 -0.7213 -1.2493 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.1494 1.9333 1.7385 32 1 0.0984 4.3373 0.9602 33 1 1.1684 5.0973 -0.2953 34 1 3.6604 6.0664 1.0180 35 1 5.4337 8.7019 0.0000 36 1 3.3045 4.3369 2.7912 37 1 1.6031 3.8027 3.1361 38 1 1.6767 -0.2075 2.1392 39 1 1.6766 -1.7489 1.2493 40 1 3.9333 -1.2353 2.1391 41 1 3.9337 0.3058 1.2487 42 1 3.9321 -1.2365 -2.1395 43 1 3.9332 0.3054 -1.2497 44 1 1.6766 -1.7490 -1.2493 45 1 1.6766 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020307689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:43 Heat of formation + Delta-G solvation = -144.124820 kcal Electronic energy + Delta-G solvation = -27773.626641 eV Core-core repulsion = 23653.946332 eV Total energy + Delta-G solvation = -4119.680309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.01002 -48.00576 -41.77865 -39.91519 -37.72183 -35.77610 -34.46789 -32.94156 -32.14836 -31.45397 -27.07100 -26.52100 -26.41870 -25.05111 -24.29377 -23.32990 -22.09767 -20.80459 -19.91545 -19.33015 -18.43214 -18.24247 -17.45511 -17.26548 -16.80262 -16.65094 -16.32635 -15.79307 -15.47065 -15.35663 -15.01990 -14.85375 -14.64864 -14.41265 -14.32032 -13.95649 -13.78834 -13.63063 -13.41653 -13.31432 -13.26468 -13.17019 -13.03635 -12.84553 -12.59182 -12.47979 -12.42609 -12.12523 -11.97283 -11.78666 -11.74015 -11.69184 -11.31108 -11.10665 -10.90104 -10.46559 -9.90135 -9.02806 -7.96469 -5.25997 1.46879 1.48050 1.58060 1.66296 2.23466 2.54828 2.76621 3.07123 3.31621 3.35881 3.36364 3.59199 3.66311 3.71327 3.86213 3.91708 3.99893 4.05010 4.10230 4.29619 4.32466 4.36635 4.59272 4.60106 4.72867 4.76632 4.81522 4.83401 4.84969 4.91602 5.02029 5.02787 5.04630 5.13573 5.17953 5.22481 5.28625 5.33368 5.39666 5.52096 5.73632 6.26332 6.66145 7.30837 7.36487 8.07820 8.28319 9.27279 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022163 B = 0.002932 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.084269 B = 9546.670145 C =10076.786123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 C 0.514 3.486 4 O -0.583 6.583 5 N -0.697 5.697 6 C 0.133 3.867 7 H 0.067 0.933 8 C -0.169 4.169 9 C 0.148 3.852 10 H 0.077 0.923 11 N -0.724 5.724 12 C -0.242 4.242 13 H 0.083 0.917 14 C -0.079 4.079 15 N -0.972 5.972 16 Si 0.975 3.025 17 H -0.261 1.261 18 H -0.293 1.293 19 H -0.297 1.297 20 C -0.138 4.138 21 C -0.100 4.100 22 C -0.162 4.162 23 C 0.284 3.716 24 F -0.201 7.201 25 F -0.220 7.220 26 C -0.174 4.174 27 C -0.090 4.090 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.416 0.584 32 H 0.107 0.893 33 H 0.031 0.969 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.778 -24.180 4.773 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 C 0.302 3.698 4 O -0.463 6.463 5 N -0.349 5.349 6 C 0.028 3.972 7 H 0.085 0.915 8 C -0.211 4.211 9 C 0.037 3.963 10 H 0.095 0.905 11 N -0.361 5.361 12 C -0.373 4.373 13 H 0.100 0.900 14 C -0.271 4.271 15 N -0.623 5.623 16 Si 0.804 3.196 17 H -0.185 1.185 18 H -0.220 1.220 19 H -0.225 1.225 20 C -0.177 4.177 21 C -0.137 4.137 22 C -0.200 4.200 23 C 0.248 3.752 24 F -0.182 7.182 25 F -0.201 7.201 26 C -0.211 4.211 27 C -0.127 4.127 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.255 0.745 32 H 0.125 0.875 33 H 0.050 0.950 34 H 0.202 0.798 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.361 -23.742 4.171 26.648 hybrid contribution 1.006 0.999 -0.576 1.530 sum -10.354 -22.743 3.595 25.246 Atomic orbital electron populations 1.21865 0.89442 1.04792 1.03344 1.20967 0.99276 0.89867 0.97942 1.21208 0.79027 0.88394 0.81219 1.90661 1.39823 1.78167 1.37602 1.45869 1.52807 1.10978 1.25211 1.22151 0.96964 0.79998 0.98130 0.91454 1.24189 0.99273 0.97702 0.99955 1.21270 0.91071 0.89674 0.94255 0.90489 1.42405 1.13656 1.03810 1.76253 1.19756 0.98535 0.84642 1.34388 0.89961 1.25623 0.96122 1.02669 1.02650 1.69843 1.05444 1.35529 1.51469 0.85052 0.77846 0.80112 0.76628 1.18527 1.22022 1.22481 1.23730 1.02411 0.95952 0.95628 1.21684 0.91609 1.03475 0.96958 1.22576 0.99519 1.01601 0.96287 1.21347 0.74369 0.79423 1.00070 1.92964 1.88226 1.39201 1.97792 1.92974 1.32596 1.96702 1.97823 1.22757 0.99455 1.02957 0.95972 1.21371 0.92169 1.01822 0.97379 0.92826 0.88771 0.89946 0.74546 0.87500 0.94975 0.79755 0.94102 0.92317 0.85493 0.87245 0.87469 0.87534 0.90628 0.89746 0.88840 0.88181 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.37 71.98 0.60 -0.70 16 2 C -0.08 -1.17 0.62 -52.93 -0.03 -1.20 16 3 C 0.51 12.44 4.97 87.65 0.44 12.87 16 4 O -0.58 -20.53 13.26 -3.06 -0.04 -20.57 16 5 N -0.70 -14.68 5.14 -439.75 -2.26 -16.94 16 6 C 0.13 4.03 4.13 45.58 0.19 4.22 16 7 H 0.07 2.72 7.47 -2.39 -0.02 2.71 16 8 C -0.17 -5.49 7.69 31.18 0.24 -5.25 16 9 C 0.15 5.43 4.56 45.52 0.21 5.64 16 10 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 11 N -0.72 -36.41 5.31 -320.44 -1.70 -38.11 16 12 C -0.24 -13.36 9.97 84.03 0.84 -12.52 16 13 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 14 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 15 N -0.97 -60.88 13.06 21.65 0.28 -60.59 16 16 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 20 C -0.14 -3.81 7.57 31.12 0.24 -3.58 16 21 C -0.10 -1.08 4.51 30.60 0.14 -0.94 16 22 C -0.16 -2.76 5.23 30.59 0.16 -2.60 16 23 C 0.28 6.17 2.10 30.59 0.06 6.23 16 24 F -0.20 -4.13 16.02 44.97 0.72 -3.40 16 25 F -0.22 -5.97 17.06 44.97 0.77 -5.20 16 26 C -0.17 -3.96 5.16 30.58 0.16 -3.80 16 27 C -0.09 -1.58 4.25 30.58 0.13 -1.45 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.50 7.56 -2.39 -0.02 0.48 16 31 H 0.42 5.16 7.56 -92.71 -0.70 4.46 16 32 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.37 20.55 7.90 -92.71 -0.73 19.82 16 35 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.13 2.31 8.12 -2.39 -0.02 2.29 16 38 H 0.11 0.65 7.56 -2.39 -0.02 0.63 16 39 H 0.11 0.81 7.80 -2.39 -0.02 0.79 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 1.62 7.22 -2.38 -0.02 1.60 16 42 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.09 2.77 5.51 -2.39 -0.01 2.76 16 44 H 0.10 1.30 7.80 -2.38 -0.02 1.28 16 45 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -74.65 359.21 3.20 -71.44 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.42 Total: 32.12 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 3.83 Total: -7.17 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -3.68 Total: -115.65 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.04 Total: -20.57 kcal Atomic # 9 Polarization: -10.09 SS G_CDS: 1.49 Total: -8.61 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.65 3.20 -71.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020307689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.681 kcal (2) G-P(sol) polarization free energy of solvation -74.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds