Wall clock time and date at job start Tue Mar 31 2020 11:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39908 * 109.47050 * 2 1 4 4 F 1.39904 * 109.47542 * 240.00144 * 2 1 3 5 5 C 1.52999 * 109.47567 * 119.99829 * 2 1 3 6 6 C 1.50693 * 109.47503 * 180.02562 * 5 2 1 7 7 O 1.21283 * 119.99920 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00202 * 180.02562 * 6 5 2 9 9 C 1.46951 * 120.84341 * 359.97438 * 8 6 5 10 10 C 1.53134 * 109.02704 * 125.96534 * 9 8 6 11 11 C 1.53128 * 109.48072 * 54.06368 * 10 9 8 12 12 C 1.52849 * 109.34321 * 299.35220 * 11 10 9 13 13 H 1.08999 * 109.25702 * 302.49515 * 12 11 10 14 14 C 1.52772 * 110.20416 * 183.23466 * 12 11 10 15 15 N 1.46885 * 109.19251 * 292.67533 * 14 12 11 16 16 C 1.36935 * 120.77635 * 126.62599 * 15 14 12 17 17 H 1.08004 * 120.00015 * 207.50363 * 16 15 14 18 18 C 1.38808 * 120.00290 * 27.50200 * 16 15 14 19 19 N 1.31621 * 119.99480 * 17.33304 * 18 16 15 20 20 Si 1.86800 * 120.00374 * 197.32687 * 18 16 15 21 21 H 1.48492 * 109.47144 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47004 * 120.00066 * 20 18 16 23 23 H 1.48496 * 109.47184 * 239.99985 * 20 18 16 24 24 C 1.46976 * 118.44857 * 306.65238 * 15 14 12 25 25 C 1.53157 * 109.19747 * 53.89599 * 24 15 14 26 26 C 1.47304 * 120.84793 * 179.97438 * 8 6 5 27 27 H 1.09004 * 110.07747 * 355.10557 * 26 8 6 28 28 H 1.09000 * 109.47403 * 300.00143 * 1 2 3 29 29 H 1.09004 * 109.47463 * 60.00023 * 1 2 3 30 30 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46796 * 59.99805 * 5 2 1 32 32 H 1.09000 * 109.46781 * 300.00408 * 5 2 1 33 33 H 1.08995 * 109.54546 * 6.09709 * 9 8 6 34 34 H 1.09008 * 109.61742 * 245.86902 * 9 8 6 35 35 H 1.09002 * 109.47239 * 294.06514 * 10 9 8 36 36 H 1.09002 * 109.47469 * 174.06672 * 10 9 8 37 37 H 1.08997 * 109.48971 * 59.31885 * 11 10 9 38 38 H 1.09008 * 109.48989 * 179.39274 * 11 10 9 39 39 H 1.09008 * 109.51681 * 52.58787 * 14 12 11 40 40 H 1.08995 * 109.52205 * 172.75845 * 14 12 11 41 41 H 0.97001 * 119.99798 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.61351 * 174.05561 * 24 15 14 43 43 H 1.08998 * 109.61036 * 294.56687 * 24 15 14 44 44 H 1.08996 * 110.07918 * 185.37265 * 25 24 15 45 45 H 1.08992 * 108.85408 * 65.42140 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 3.5470 -0.7206 1.2495 7 8 4.1534 -0.1947 0.3403 8 7 4.2209 -1.3045 2.2601 9 6 3.5050 -1.9466 3.3713 10 6 4.0044 -3.3865 3.5212 11 6 5.5289 -3.3859 3.6647 12 6 6.1549 -2.7699 2.4137 13 1 5.8333 -3.3317 1.5368 14 6 7.6789 -2.8324 2.5009 15 7 8.1378 -1.9445 3.5772 16 6 8.9573 -2.4120 4.5697 17 1 8.9404 -1.9507 5.5461 18 6 9.8097 -3.4790 4.3209 19 7 10.0900 -3.8220 3.0815 20 14 10.5590 -4.4277 5.7449 21 1 10.0886 -3.8475 7.0283 22 1 10.1439 -5.8512 5.6642 23 1 12.0396 -4.3390 5.6743 24 6 7.6964 -0.5426 3.5645 25 6 6.1677 -0.4967 3.4832 26 6 5.6938 -1.3154 2.2790 27 1 6.0830 -0.8835 1.3569 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6767 -1.7489 1.2492 32 1 1.6767 -0.2073 2.1392 33 1 2.4355 -1.9515 3.1616 34 1 3.6933 -1.3974 4.2939 35 1 3.7227 -3.9624 2.6397 36 1 3.5563 -3.8361 4.4074 37 1 5.8117 -2.8001 4.5392 38 1 5.8835 -4.4100 3.7822 39 1 7.9898 -3.8550 2.7149 40 1 8.1114 -2.5101 1.5537 41 1 10.6860 -4.5674 2.9076 42 1 8.0304 -0.0456 4.4753 43 1 8.1132 -0.0357 2.6943 44 1 5.8294 0.5340 3.3771 45 1 5.7534 -0.9222 4.3971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021663536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:47 Heat of formation + Delta-G solvation = -120.213968 kcal Electronic energy + Delta-G solvation = -28567.666354 eV Core-core repulsion = 24449.022898 eV Total energy + Delta-G solvation = -4118.643457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.92209 -46.90874 -40.35571 -38.08145 -35.57402 -33.56698 -32.62075 -32.44978 -30.36279 -29.65259 -28.54215 -25.61814 -24.83350 -22.81418 -22.15425 -21.87570 -21.26508 -19.30568 -17.88822 -17.68647 -17.38710 -16.91203 -16.48345 -15.86329 -15.28952 -15.20695 -15.06066 -14.38376 -14.06479 -13.80796 -13.59255 -13.54029 -13.27050 -13.18792 -13.08715 -12.87957 -12.74020 -12.66417 -12.46646 -12.27002 -12.23157 -12.17455 -11.56189 -11.27368 -11.05876 -10.93263 -10.76800 -10.63216 -10.48191 -10.11767 -10.07213 -9.99362 -9.73911 -9.61560 -9.39605 -8.51686 -8.28546 -6.68805 -5.80045 -3.21715 2.67335 2.96592 3.35455 3.43810 3.45477 3.59710 3.84572 4.15238 4.20064 4.48033 4.67222 4.83911 4.87005 4.96585 5.09973 5.17436 5.22837 5.36573 5.43951 5.44538 5.46331 5.48710 5.50808 5.64128 5.73909 5.87415 6.03688 6.06362 6.19943 6.31903 6.40409 6.45710 6.52684 6.67700 6.77273 6.88970 6.94676 7.01514 7.31021 7.54448 7.65154 7.78605 8.25260 8.42991 9.19601 9.83038 10.40507 11.28674 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.003404 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.107292 B = 8223.944765 C = 8450.239314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.306 3.694 3 F -0.193 7.193 4 F -0.192 7.192 5 C -0.189 4.189 6 C 0.511 3.489 7 O -0.527 6.527 8 N -0.604 5.604 9 C 0.107 3.893 10 C -0.135 4.135 11 C -0.104 4.104 12 C -0.115 4.115 13 H 0.056 0.944 14 C 0.177 3.823 15 N -0.588 5.588 16 C -0.249 4.249 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.147 3.853 25 C -0.140 4.140 26 C 0.155 3.845 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.020 0.980 41 H 0.253 0.747 42 H 0.057 0.943 43 H 0.018 0.982 44 H 0.052 0.948 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.286 3.556 -0.647 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.269 3.731 3 F -0.174 7.174 4 F -0.173 7.173 5 C -0.230 4.230 6 C 0.297 3.703 7 O -0.404 6.404 8 N -0.337 5.337 9 C -0.016 4.016 10 C -0.173 4.173 11 C -0.141 4.141 12 C -0.136 4.136 13 H 0.075 0.925 14 C 0.050 3.950 15 N -0.311 5.311 16 C -0.379 4.379 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.020 3.980 25 C -0.180 4.180 26 C 0.053 3.947 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.809 3.730 -1.209 21.176 hybrid contribution 0.414 -0.604 0.652 0.980 sum -20.396 3.126 -0.557 20.642 Atomic orbital electron populations 1.22795 0.91439 1.05431 1.05528 1.20624 0.92823 0.76129 0.83490 1.93046 1.90591 1.36951 1.96783 1.93049 1.90578 1.80755 1.52947 1.22895 0.96060 1.04624 0.99402 1.20076 0.88789 0.79021 0.82364 1.90778 1.69711 1.44639 1.35233 1.48504 1.07928 1.55235 1.22002 1.21718 0.95534 0.94225 0.90166 1.21975 0.98441 0.95258 1.01675 1.21428 0.91937 1.01468 0.99268 1.22014 1.00655 0.93677 0.97222 0.92537 1.20724 0.86069 0.97727 0.90430 1.44026 1.54944 1.03547 1.28536 1.19181 1.14276 1.14101 0.90316 0.91631 1.25022 0.97201 1.01431 0.95942 1.70043 1.37536 1.29503 1.17494 0.86262 0.78692 0.79946 0.82116 1.20290 1.21614 1.21780 1.20841 0.90316 0.87789 0.99031 1.22388 0.99773 0.98181 0.97694 1.21375 0.76436 0.96932 0.99907 0.88805 0.89220 0.89727 0.89207 0.86194 0.86236 0.90760 0.91108 0.92127 0.91229 0.90510 0.91999 0.88944 0.96231 0.93670 0.92451 0.96362 0.92946 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 9.38 37.15 0.35 -0.87 16 2 C 0.31 3.42 1.85 -26.73 -0.05 3.37 16 3 F -0.19 -2.75 16.14 2.25 0.04 -2.71 16 4 F -0.19 -2.78 16.15 2.25 0.04 -2.74 16 5 C -0.19 -1.85 3.65 -27.89 -0.10 -1.95 16 6 C 0.51 7.76 7.47 -10.99 -0.08 7.67 16 7 O -0.53 -10.45 14.28 5.56 0.08 -10.37 16 8 N -0.60 -8.82 2.65 -164.88 -0.44 -9.26 16 9 C 0.11 1.17 5.86 -3.73 -0.02 1.15 16 10 C -0.14 -1.63 6.08 -26.60 -0.16 -1.79 16 11 C -0.10 -1.70 4.86 -26.74 -0.13 -1.83 16 12 C -0.11 -2.14 2.45 -90.72 -0.22 -2.36 16 13 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 14 C 0.18 4.13 4.70 -3.95 -0.02 4.11 16 15 N -0.59 -14.21 2.65 -172.59 -0.46 -14.67 16 16 C -0.25 -6.59 9.60 -15.06 -0.14 -6.74 16 17 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 19 N -0.90 -25.75 11.18 55.49 0.62 -25.13 16 20 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.15 3.07 6.49 -3.70 -0.02 3.05 16 25 C -0.14 -2.45 5.07 -26.58 -0.13 -2.59 16 26 C 0.16 2.76 2.61 -67.33 -0.18 2.59 16 27 H 0.09 1.93 7.06 -51.93 -0.37 1.57 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.12 0.85 7.71 -51.93 -0.40 0.45 16 32 H 0.12 0.82 7.94 -51.93 -0.41 0.41 16 33 H 0.07 0.56 5.96 -51.93 -0.31 0.25 16 34 H 0.07 0.76 7.27 -51.92 -0.38 0.38 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.38 6.22 -51.93 -0.32 1.06 16 38 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 39 H 0.09 2.40 6.03 -51.92 -0.31 2.09 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.08 5.42 -51.93 -0.28 0.80 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -32.66 348.15 -7.88 -40.54 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.97 Total: -0.88 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.00 Total: 3.79 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.27 Total: -49.06 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.07 Total: -5.45 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.66 -7.88 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021663536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.675 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds