Wall clock time and date at job start Tue Mar 31 2020 11:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39901 * 109.47201 * 2 1 4 4 F 1.39899 * 109.47109 * 239.99746 * 2 1 3 5 5 C 1.53005 * 109.47057 * 119.99927 * 2 1 3 6 6 C 1.50698 * 109.47041 * 179.97438 * 5 2 1 7 7 O 1.21287 * 120.00246 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00026 * 179.97438 * 6 5 2 9 9 C 1.47063 * 120.84065 * 354.96046 * 8 6 5 10 10 C 1.53135 * 109.03737 * 233.41183 * 9 8 6 11 11 C 1.53140 * 109.61469 * 305.99028 * 10 9 8 12 12 C 1.52815 * 109.27569 * 60.85017 * 11 10 9 13 13 H 1.09007 * 109.47260 * 58.02991 * 12 11 10 14 14 C 1.53069 * 110.34308 * 178.57023 * 12 11 10 15 15 N 1.47068 * 108.33286 * 175.44405 * 14 12 11 16 16 C 1.36942 * 120.46907 * 126.67109 * 15 14 12 17 17 H 1.08001 * 119.99191 * 322.01456 * 16 15 14 18 18 C 1.38805 * 120.00290 * 142.01296 * 16 15 14 19 19 N 1.31614 * 120.00263 * 173.44056 * 18 16 15 20 20 Si 1.86803 * 119.99798 * 353.43865 * 18 16 15 21 21 H 1.48503 * 109.47170 * 89.04129 * 20 18 16 22 22 H 1.48502 * 109.47124 * 209.03884 * 20 18 16 23 23 H 1.48498 * 109.47159 * 329.03986 * 20 18 16 24 24 C 1.46860 * 119.06437 * 306.68986 * 15 14 12 25 25 C 1.53313 * 109.10745 * 52.64069 * 24 15 14 26 26 C 1.46701 * 120.84403 * 174.67731 * 8 6 5 27 27 H 1.08993 * 109.53078 * 245.24008 * 26 8 6 28 28 H 1.09003 * 109.46663 * 300.00231 * 1 2 3 29 29 H 1.08998 * 109.46950 * 59.99743 * 1 2 3 30 30 H 1.08995 * 109.47279 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47060 * 299.99953 * 5 2 1 32 32 H 1.09004 * 109.46817 * 59.99885 * 5 2 1 33 33 H 1.09007 * 109.54676 * 353.27728 * 9 8 6 34 34 H 1.08999 * 109.54473 * 113.45688 * 9 8 6 35 35 H 1.09008 * 109.44532 * 66.03230 * 10 9 8 36 36 H 1.08997 * 109.44840 * 185.94203 * 10 9 8 37 37 H 1.09001 * 109.50551 * 180.78918 * 11 10 9 38 38 H 1.08995 * 109.50607 * 300.90932 * 11 10 9 39 39 H 1.08997 * 109.69135 * 295.15333 * 14 12 11 40 40 H 1.08999 * 109.69050 * 55.69032 * 14 12 11 41 41 H 0.96996 * 120.00371 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.52830 * 172.52592 * 24 15 14 43 43 H 1.09001 * 109.53312 * 292.74890 * 24 15 14 44 44 H 1.09000 * 109.55863 * 65.73029 * 25 24 15 45 45 H 1.08997 * 109.56026 * 185.95349 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0400 -0.7213 1.2493 6 6 3.5470 -0.7218 1.2490 7 8 4.1534 -0.1966 0.3394 8 7 4.2209 -1.3051 2.2600 9 6 3.5086 -1.8489 3.4261 10 6 4.1076 -1.2495 4.7016 11 6 5.6210 -1.4831 4.7179 12 6 6.2507 -0.7950 3.5074 13 1 6.0164 0.2693 3.5318 14 6 7.7697 -0.9833 3.5188 15 7 8.3173 -0.4018 2.2839 16 6 9.3259 0.5229 2.3396 17 1 9.3351 1.2652 3.1240 18 6 10.3362 0.5060 1.3879 19 7 11.2328 1.4692 1.3629 20 14 10.4233 -0.8838 0.1428 21 1 9.6160 -0.5292 -1.0521 22 1 11.8362 -1.0991 -0.2606 23 1 9.8872 -2.1278 0.7512 24 6 7.7668 -0.8263 0.9903 25 6 6.2425 -0.6637 1.0158 26 6 5.6830 -1.4190 2.2224 27 1 5.9653 -2.4703 2.1692 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 -0.2074 2.1392 32 1 1.6766 -1.7489 1.2493 33 1 2.4521 -1.5885 3.3621 34 1 3.6163 -2.9334 3.4459 35 1 3.9054 -0.1787 4.7290 36 1 3.6575 -1.7257 5.5725 37 1 6.0435 -1.0681 5.6330 38 1 5.8246 -2.5530 4.6749 39 1 8.1962 -0.4761 4.3842 40 1 8.0077 -2.0462 3.5620 41 1 11.9391 1.4572 0.6981 42 1 8.1859 -0.2089 0.1957 43 1 8.0189 -1.8717 0.8123 44 1 5.9896 0.3937 1.0937 45 1 5.8164 -1.0745 0.1005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021663545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:54 Heat of formation + Delta-G solvation = -103.249459 kcal Electronic energy + Delta-G solvation = -28780.132827 eV Core-core repulsion = 24662.225007 eV Total energy + Delta-G solvation = -4117.907820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.91952 -46.90523 -40.59086 -37.92476 -36.10935 -33.67710 -33.03335 -32.41349 -30.66379 -29.88452 -28.59060 -25.77363 -24.78823 -22.97515 -22.57569 -21.78067 -20.60202 -19.75505 -19.14076 -17.69379 -17.18622 -16.81309 -16.57177 -15.83261 -15.55828 -15.42468 -14.87251 -14.59834 -14.29681 -14.08563 -13.85896 -13.55594 -13.37420 -13.20735 -13.11753 -12.96075 -12.85585 -12.70581 -12.51402 -12.37594 -12.29415 -12.18939 -11.86605 -11.46165 -11.20181 -11.11924 -11.02890 -10.91832 -10.52326 -10.36730 -10.25707 -10.06964 -9.56136 -9.43602 -8.89719 -8.53932 -8.37910 -6.71518 -5.86986 -3.37052 2.61970 2.86810 3.41851 3.52239 3.55263 3.57475 3.82873 4.10074 4.18184 4.57263 4.59529 4.69410 4.79001 4.86228 4.87406 4.92167 5.13722 5.17209 5.20630 5.32718 5.36375 5.43512 5.45189 5.45945 5.52233 5.73372 5.75242 5.90058 5.99858 6.10141 6.18717 6.20592 6.27493 6.37989 6.58009 6.68818 6.79997 6.83446 6.91088 7.19835 7.46956 8.15152 8.23891 8.43727 9.02430 9.78318 10.19897 11.28699 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.004554 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.045451 B = 6147.087066 C = 7282.587714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.306 3.694 3 F -0.191 7.191 4 F -0.192 7.192 5 C -0.191 4.191 6 C 0.510 3.490 7 O -0.505 6.505 8 N -0.608 5.608 9 C 0.107 3.893 10 C -0.133 4.133 11 C -0.114 4.114 12 C -0.116 4.116 13 H 0.074 0.926 14 C 0.160 3.840 15 N -0.608 5.608 16 C -0.263 4.263 17 H 0.080 0.920 18 C 0.029 3.971 19 N -0.916 5.916 20 Si 0.895 3.105 21 H -0.286 1.286 22 H -0.305 1.305 23 H -0.267 1.267 24 C 0.116 3.884 25 C -0.117 4.117 26 C 0.159 3.841 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.071 0.929 43 H 0.024 0.976 44 H 0.075 0.925 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.805 -8.915 4.903 26.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.269 3.731 3 F -0.172 7.172 4 F -0.173 7.173 5 C -0.232 4.232 6 C 0.296 3.704 7 O -0.380 6.380 8 N -0.342 5.342 9 C -0.016 4.016 10 C -0.171 4.171 11 C -0.152 4.152 12 C -0.137 4.137 13 H 0.093 0.907 14 C 0.033 3.967 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.098 0.902 18 C -0.171 4.171 19 N -0.559 5.559 20 Si 0.726 3.274 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.192 1.192 24 C -0.010 4.010 25 C -0.156 4.156 26 C 0.057 3.943 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.041 0.959 44 H 0.094 0.906 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.275 -8.533 4.290 26.086 hybrid contribution 0.102 -0.663 -0.689 0.962 sum -24.173 -9.197 3.601 26.113 Atomic orbital electron populations 1.22795 0.91499 1.05335 1.05572 1.20605 0.92805 0.76241 0.83419 1.93063 1.90543 1.36810 1.96760 1.93048 1.90573 1.80751 1.52964 1.22949 0.96290 1.04511 0.99433 1.20108 0.88644 0.79049 0.82619 1.90889 1.68273 1.42785 1.36026 1.48215 1.07931 1.58755 1.19329 1.21740 0.95917 0.98390 0.85553 1.21901 0.97005 1.01614 0.96616 1.21513 0.94066 1.00769 0.98840 1.22185 0.98288 1.00318 0.92945 0.90715 1.20905 0.89292 0.96092 0.90418 1.44329 1.40827 1.48473 0.99581 1.18866 0.98835 1.06820 1.14673 0.90208 1.25492 0.95065 0.97334 0.99163 1.69746 1.16597 1.33018 1.36519 0.86789 0.75260 0.83919 0.81393 1.21367 1.23357 1.19223 1.21662 0.92239 0.97441 0.89671 1.22488 0.95825 1.01388 0.95922 1.21402 0.76526 0.99142 0.97240 0.91504 0.89243 0.89697 0.89283 0.86320 0.86354 0.90368 0.91333 0.91528 0.90929 0.91440 0.91944 0.91597 0.95950 0.92766 0.91084 0.95850 0.90634 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 9.38 37.16 0.35 -0.86 16 2 C 0.31 3.38 1.85 -26.73 -0.05 3.33 16 3 F -0.19 -2.80 16.15 2.25 0.04 -2.76 16 4 F -0.19 -2.74 16.14 2.25 0.04 -2.70 16 5 C -0.19 -1.75 3.71 -27.88 -0.10 -1.86 16 6 C 0.51 7.37 7.39 -10.98 -0.08 7.29 16 7 O -0.51 -9.71 10.38 5.55 0.06 -9.66 16 8 N -0.61 -8.12 2.96 -165.03 -0.49 -8.61 16 9 C 0.11 0.93 6.32 -3.67 -0.02 0.91 16 10 C -0.13 -1.21 6.07 -26.59 -0.16 -1.37 16 11 C -0.11 -1.34 5.23 -26.75 -0.14 -1.48 16 12 C -0.12 -1.90 2.21 -90.31 -0.20 -2.10 16 13 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 14 C 0.16 3.17 5.86 -3.70 -0.02 3.15 16 15 N -0.61 -15.05 2.69 -172.26 -0.46 -15.51 16 16 C -0.26 -7.65 10.01 -15.06 -0.15 -7.80 16 17 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 18 C 0.03 0.86 5.40 -17.44 -0.09 0.77 16 19 N -0.92 -29.11 13.97 55.49 0.78 -28.33 16 20 Si 0.90 23.65 24.31 -169.99 -4.13 19.52 16 21 H -0.29 -7.47 6.72 56.52 0.38 -7.09 16 22 H -0.31 -8.11 7.11 56.52 0.40 -7.71 16 23 H -0.27 -6.81 6.08 56.52 0.34 -6.47 16 24 C 0.12 2.72 4.13 -3.68 -0.02 2.71 16 25 C -0.12 -2.41 3.79 -26.59 -0.10 -2.51 16 26 C 0.16 2.63 2.68 -67.47 -0.18 2.45 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.12 0.76 7.49 -51.93 -0.39 0.37 16 32 H 0.12 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.08 0.45 6.00 -51.93 -0.31 0.14 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 42 H 0.07 1.85 4.97 -51.93 -0.26 1.59 16 43 H 0.02 0.55 6.49 -51.93 -0.34 0.21 16 44 H 0.08 1.75 7.16 -51.93 -0.37 1.38 16 45 H 0.07 1.57 6.44 -51.93 -0.33 1.23 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -35.97 341.07 -7.14 -43.11 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -7.12 Total: -2.83 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.97 Total: 2.63 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.18 Total: -52.45 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.06 Total: -9.66 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.07 Total: -5.47 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -4.13 Total: 19.52 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.97 -7.14 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021663545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.139 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds