Wall clock time and date at job start Tue Mar 31 2020 11:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39901 * 109.47201 * 2 1 4 4 F 1.39899 * 109.47109 * 239.99746 * 2 1 3 5 5 C 1.53005 * 109.47057 * 119.99927 * 2 1 3 6 6 C 1.50698 * 109.47041 * 179.97438 * 5 2 1 7 7 O 1.21287 * 120.00246 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00026 * 179.97438 * 6 5 2 9 9 C 1.47063 * 120.84065 * 354.96046 * 8 6 5 10 10 C 1.53135 * 109.03737 * 233.41183 * 9 8 6 11 11 C 1.53140 * 109.61469 * 305.99028 * 10 9 8 12 12 C 1.52815 * 109.27569 * 60.85017 * 11 10 9 13 13 H 1.09007 * 109.47260 * 58.02991 * 12 11 10 14 14 C 1.53069 * 110.34308 * 178.57023 * 12 11 10 15 15 N 1.47068 * 108.33286 * 175.44405 * 14 12 11 16 16 C 1.36942 * 120.46907 * 126.67109 * 15 14 12 17 17 H 1.08001 * 119.99191 * 322.01456 * 16 15 14 18 18 C 1.38805 * 120.00290 * 142.01296 * 16 15 14 19 19 N 1.31614 * 120.00263 * 173.44056 * 18 16 15 20 20 Si 1.86803 * 119.99798 * 353.43865 * 18 16 15 21 21 H 1.48503 * 109.47170 * 89.04129 * 20 18 16 22 22 H 1.48502 * 109.47124 * 209.03884 * 20 18 16 23 23 H 1.48498 * 109.47159 * 329.03986 * 20 18 16 24 24 C 1.46860 * 119.06437 * 306.68986 * 15 14 12 25 25 C 1.53313 * 109.10745 * 52.64069 * 24 15 14 26 26 C 1.46701 * 120.84403 * 174.67731 * 8 6 5 27 27 H 1.08993 * 109.53078 * 245.24008 * 26 8 6 28 28 H 1.09003 * 109.46663 * 300.00231 * 1 2 3 29 29 H 1.08998 * 109.46950 * 59.99743 * 1 2 3 30 30 H 1.08995 * 109.47279 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47060 * 299.99953 * 5 2 1 32 32 H 1.09004 * 109.46817 * 59.99885 * 5 2 1 33 33 H 1.09007 * 109.54676 * 353.27728 * 9 8 6 34 34 H 1.08999 * 109.54473 * 113.45688 * 9 8 6 35 35 H 1.09008 * 109.44532 * 66.03230 * 10 9 8 36 36 H 1.08997 * 109.44840 * 185.94203 * 10 9 8 37 37 H 1.09001 * 109.50551 * 180.78918 * 11 10 9 38 38 H 1.08995 * 109.50607 * 300.90932 * 11 10 9 39 39 H 1.08997 * 109.69135 * 295.15333 * 14 12 11 40 40 H 1.08999 * 109.69050 * 55.69032 * 14 12 11 41 41 H 0.96996 * 120.00371 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.52830 * 172.52592 * 24 15 14 43 43 H 1.09001 * 109.53312 * 292.74890 * 24 15 14 44 44 H 1.09000 * 109.55863 * 65.73029 * 25 24 15 45 45 H 1.08997 * 109.56026 * 185.95349 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0400 -0.7213 1.2493 6 6 3.5470 -0.7218 1.2490 7 8 4.1534 -0.1966 0.3394 8 7 4.2209 -1.3051 2.2600 9 6 3.5086 -1.8489 3.4261 10 6 4.1076 -1.2495 4.7016 11 6 5.6210 -1.4831 4.7179 12 6 6.2507 -0.7950 3.5074 13 1 6.0164 0.2693 3.5318 14 6 7.7697 -0.9833 3.5188 15 7 8.3173 -0.4018 2.2839 16 6 9.3259 0.5229 2.3396 17 1 9.3351 1.2652 3.1240 18 6 10.3362 0.5060 1.3879 19 7 11.2328 1.4692 1.3629 20 14 10.4233 -0.8838 0.1428 21 1 9.6160 -0.5292 -1.0521 22 1 11.8362 -1.0991 -0.2606 23 1 9.8872 -2.1278 0.7512 24 6 7.7668 -0.8263 0.9903 25 6 6.2425 -0.6637 1.0158 26 6 5.6830 -1.4190 2.2224 27 1 5.9653 -2.4703 2.1692 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6767 -0.2074 2.1392 32 1 1.6766 -1.7489 1.2493 33 1 2.4521 -1.5885 3.3621 34 1 3.6163 -2.9334 3.4459 35 1 3.9054 -0.1787 4.7290 36 1 3.6575 -1.7257 5.5725 37 1 6.0435 -1.0681 5.6330 38 1 5.8246 -2.5530 4.6749 39 1 8.1962 -0.4761 4.3842 40 1 8.0077 -2.0462 3.5620 41 1 11.9391 1.4572 0.6981 42 1 8.1859 -0.2089 0.1957 43 1 8.0189 -1.8717 0.8123 44 1 5.9896 0.3937 1.0937 45 1 5.8164 -1.0745 0.1005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021663545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:54 Heat of formation + Delta-G solvation = -128.416172 kcal Electronic energy + Delta-G solvation = -28781.224138 eV Core-core repulsion = 24662.225007 eV Total energy + Delta-G solvation = -4118.999131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.83322 -47.86504 -41.75493 -39.28397 -37.52984 -34.86509 -34.13648 -34.01852 -32.38704 -31.22452 -29.44775 -27.29065 -26.11033 -24.32865 -24.08377 -22.84829 -21.77630 -21.30752 -20.15208 -18.87922 -18.56174 -17.97141 -17.74359 -17.26326 -16.71524 -16.52694 -16.36276 -15.98102 -15.55046 -15.51474 -14.95464 -14.85137 -14.72058 -14.41223 -14.23223 -14.11022 -13.91853 -13.76432 -13.67774 -13.50126 -13.37362 -13.25952 -13.04403 -13.03167 -12.75033 -12.36687 -12.21989 -12.11381 -11.91777 -11.85369 -11.70067 -11.66769 -11.38111 -11.29781 -10.74516 -10.21531 -9.51289 -8.77128 -8.21954 -5.68775 1.28071 1.32220 1.43332 1.60080 1.90191 2.36299 2.84586 3.06434 3.16076 3.25889 3.32991 3.51577 3.72998 3.77927 3.90252 4.05373 4.13265 4.20521 4.24951 4.35296 4.38381 4.39754 4.45593 4.59582 4.66539 4.71799 4.75184 4.81896 4.86363 4.87623 4.88763 4.97410 5.06252 5.09602 5.14665 5.26536 5.35065 5.37329 5.55701 5.65519 5.89076 6.09280 6.45700 6.89564 7.19802 7.54776 7.99828 8.97349 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.004554 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.045451 B = 6147.087066 C = 7282.587714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.282 3.718 3 F -0.222 7.222 4 F -0.219 7.219 5 C -0.178 4.178 6 C 0.494 3.506 7 O -0.568 6.568 8 N -0.607 5.607 9 C 0.099 3.901 10 C -0.128 4.128 11 C -0.109 4.109 12 C -0.104 4.104 13 H 0.041 0.959 14 C 0.153 3.847 15 N -0.623 5.623 16 C -0.255 4.255 17 H 0.044 0.956 18 C -0.029 4.029 19 N -0.962 5.962 20 Si 0.957 3.043 21 H -0.287 1.287 22 H -0.305 1.305 23 H -0.248 1.248 24 C 0.114 3.886 25 C -0.099 4.099 26 C 0.163 3.837 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.263 0.737 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.838 -12.398 6.764 32.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.246 3.754 3 F -0.203 7.203 4 F -0.200 7.200 5 C -0.217 4.217 6 C 0.283 3.717 7 O -0.447 6.447 8 N -0.339 5.339 9 C -0.022 4.022 10 C -0.166 4.166 11 C -0.147 4.147 12 C -0.125 4.125 13 H 0.060 0.940 14 C 0.029 3.971 15 N -0.348 5.348 16 C -0.385 4.385 17 H 0.062 0.938 18 C -0.224 4.224 19 N -0.608 5.608 20 Si 0.786 3.214 21 H -0.214 1.214 22 H -0.233 1.233 23 H -0.172 1.172 24 C -0.011 4.011 25 C -0.138 4.138 26 C 0.060 3.940 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.378 -12.060 6.214 31.454 hybrid contribution 1.315 0.507 -1.197 1.849 sum -27.062 -11.554 5.016 29.850 Atomic orbital electron populations 1.22809 0.87265 1.07462 1.06508 1.21532 0.95730 0.74853 0.83333 1.93001 1.91238 1.39176 1.96870 1.92992 1.91217 1.81122 1.54659 1.23039 0.91576 1.07287 0.99815 1.21133 0.91071 0.77734 0.81760 1.90866 1.70053 1.45401 1.38393 1.48293 1.06412 1.58444 1.20776 1.22201 0.97462 0.99565 0.82923 1.21909 0.94722 1.01485 0.98518 1.21508 0.96048 1.01090 0.96053 1.21980 0.95824 0.99080 0.95653 0.94031 1.21140 0.91647 0.96548 0.87812 1.44468 1.40342 1.48276 1.01717 1.18794 0.99710 1.06744 1.13208 0.93845 1.26182 0.95010 0.99711 1.01530 1.69886 1.17820 1.35068 1.38003 0.85781 0.75021 0.81605 0.78998 1.21432 1.23327 1.17156 1.21644 0.94248 0.97072 0.88169 1.22178 0.93607 0.99784 0.98223 1.21114 0.79251 0.98854 0.94790 0.90040 0.86787 0.90380 0.86494 0.82654 0.82073 0.86294 0.88917 0.92731 0.87032 0.91141 0.90106 0.92501 0.93854 0.92824 0.94408 0.94573 0.94365 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.38 71.98 0.68 -0.93 16 2 C 0.28 5.68 1.85 30.60 0.06 5.73 16 3 F -0.22 -6.55 16.15 44.97 0.73 -5.82 16 4 F -0.22 -6.14 16.14 44.97 0.73 -5.41 16 5 C -0.18 -2.51 3.71 29.85 0.11 -2.40 16 6 C 0.49 13.39 7.39 87.66 0.65 14.04 16 7 O -0.57 -22.42 10.38 -3.05 -0.03 -22.45 16 8 N -0.61 -14.34 2.96 -794.41 -2.35 -16.69 16 9 C 0.10 1.14 6.32 86.32 0.55 1.68 16 10 C -0.13 -1.66 6.07 30.69 0.19 -1.48 16 11 C -0.11 -2.16 5.23 30.58 0.16 -2.00 16 12 C -0.10 -3.30 2.21 -10.59 -0.02 -3.33 16 13 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 14 C 0.15 6.06 5.86 86.29 0.51 6.57 16 15 N -0.62 -31.67 2.69 -698.90 -1.88 -33.55 16 16 C -0.25 -15.55 10.01 84.03 0.84 -14.71 16 17 H 0.04 2.91 8.06 -2.91 -0.02 2.88 16 18 C -0.03 -1.83 5.40 84.86 0.46 -1.38 16 19 N -0.96 -64.00 13.97 21.65 0.30 -63.70 16 20 Si 0.96 50.41 24.31 68.60 1.67 52.08 16 21 H -0.29 -15.02 6.72 99.48 0.67 -14.35 16 22 H -0.30 -15.89 7.11 99.48 0.71 -15.19 16 23 H -0.25 -12.10 6.08 99.48 0.60 -11.50 16 24 C 0.11 5.48 4.13 86.42 0.36 5.84 16 25 C -0.10 -4.19 3.79 30.68 0.12 -4.07 16 26 C 0.16 5.16 2.68 45.18 0.12 5.29 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.16 1.06 7.49 -2.39 -0.02 1.04 16 32 H 0.16 0.92 8.12 -2.38 -0.02 0.90 16 33 H 0.12 0.46 6.00 -2.38 -0.01 0.45 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 2.30 7.93 -2.39 -0.02 2.29 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.26 16.56 8.31 -92.71 -0.77 15.79 16 42 H 0.04 2.05 4.97 -2.39 -0.01 2.03 16 43 H 0.04 1.65 6.49 -2.39 -0.02 1.64 16 44 H 0.04 1.88 7.16 -2.39 -0.02 1.86 16 45 H 0.07 3.01 6.44 -2.39 -0.02 3.00 16 Total: -1.00 -88.57 341.07 4.75 -83.82 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 0.84 Total: 2.88 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 4.76 Total: 8.85 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -3.93 Total: -113.94 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.03 Total: -22.45 kcal Atomic # 9 Polarization: -12.69 SS G_CDS: 1.45 Total: -11.23 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 1.67 Total: 52.08 kcal Total: -88.57 4.75 -83.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021663545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.597 kcal (2) G-P(sol) polarization free energy of solvation -88.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds