Wall clock time and date at job start Tue Mar 31 2020 11:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39896 * 109.47122 * 2 1 4 4 F 1.39905 * 109.46850 * 240.00523 * 2 1 3 5 5 C 1.52995 * 109.47391 * 120.00684 * 2 1 3 6 6 C 1.50699 * 109.47400 * 179.97438 * 5 2 1 7 7 O 1.21282 * 119.99944 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00354 * 179.97438 * 6 5 2 9 9 C 1.47066 * 120.84434 * 354.95356 * 8 6 5 10 10 C 1.53134 * 109.11596 * 126.51082 * 9 8 6 11 11 C 1.53331 * 109.52011 * 53.96317 * 10 9 8 12 12 C 1.52825 * 109.30780 * 299.20117 * 11 10 9 13 13 H 1.09004 * 109.46841 * 302.00577 * 12 11 10 14 14 C 1.53061 * 110.34374 * 181.46288 * 12 11 10 15 15 N 1.47071 * 108.33593 * 184.56409 * 14 12 11 16 16 C 1.36936 * 120.46982 * 233.30195 * 15 14 12 17 17 H 1.08005 * 119.99890 * 144.17345 * 16 15 14 18 18 C 1.38813 * 120.00189 * 324.16128 * 16 15 14 19 19 N 1.31625 * 119.99577 * 359.38540 * 18 16 15 20 20 Si 1.86800 * 120.00058 * 179.37933 * 18 16 15 21 21 H 1.48496 * 109.47051 * 60.00368 * 20 18 16 22 22 H 1.48499 * 109.47076 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46998 * 300.00412 * 20 18 16 24 24 C 1.46866 * 119.05529 * 53.32057 * 15 14 12 25 25 C 1.53315 * 109.10316 * 307.34330 * 24 15 14 26 26 C 1.46712 * 120.84805 * 174.93469 * 8 6 5 27 27 H 1.09002 * 109.53311 * 114.60375 * 26 8 6 28 28 H 1.09002 * 109.46845 * 299.99464 * 1 2 3 29 29 H 1.09000 * 109.47699 * 59.99163 * 1 2 3 30 30 H 1.09001 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47465 * 59.99575 * 5 2 1 32 32 H 1.09002 * 109.47005 * 299.99754 * 5 2 1 33 33 H 1.08999 * 109.54381 * 246.42470 * 9 8 6 34 34 H 1.09001 * 109.54346 * 6.60348 * 9 8 6 35 35 H 1.08999 * 109.44920 * 174.08619 * 10 9 8 36 36 H 1.09008 * 109.44515 * 293.99618 * 10 9 8 37 37 H 1.09002 * 109.48418 * 179.25708 * 11 10 9 38 38 H 1.09000 * 109.52322 * 59.16945 * 11 10 9 39 39 H 1.09001 * 109.68858 * 64.85423 * 14 12 11 40 40 H 1.08999 * 109.72315 * 304.29199 * 14 12 11 41 41 H 0.97001 * 119.99187 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.53499 * 187.45573 * 24 15 14 43 43 H 1.09001 * 109.59326 * 67.26935 * 24 15 14 44 44 H 1.09005 * 109.55218 * 294.27154 * 25 24 15 45 45 H 1.08993 * 109.55981 * 173.94621 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0400 -0.7214 1.2491 6 6 3.5470 -0.7219 1.2488 7 8 4.1534 -0.1974 0.3388 8 7 4.2210 -1.3052 2.2597 9 6 3.5088 -1.8492 3.4258 10 6 3.9273 -3.3075 3.6335 11 6 5.4554 -3.3941 3.7248 12 6 6.0692 -2.8845 2.4213 13 1 5.6904 -3.4743 1.5865 14 6 7.5949 -2.9944 2.4729 15 7 8.1438 -2.3933 1.2479 16 6 9.0105 -3.0987 0.4565 17 1 8.9757 -2.9853 -0.6171 18 6 9.9340 -3.9593 1.0338 19 7 9.9847 -4.0882 2.3428 20 14 11.1047 -4.9346 -0.0468 21 1 11.9367 -3.9991 -0.8454 22 1 11.9835 -5.7737 0.8069 23 1 10.3242 -5.8066 -0.9609 24 6 7.7494 -1.0257 0.8859 25 6 6.2192 -0.9307 0.8767 26 6 5.6836 -1.4141 2.2247 27 1 6.1132 -0.8113 3.0248 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -1.7490 1.2491 32 1 1.6767 -0.2076 2.1391 33 1 3.7625 -1.2674 4.3119 34 1 2.4339 -1.7996 3.2523 35 1 3.4847 -3.6843 4.5556 36 1 3.5796 -3.9081 2.7928 37 1 5.7519 -4.4306 3.8858 38 1 5.8059 -2.7819 4.5557 39 1 7.8859 -4.0433 2.5295 40 1 7.9729 -2.4608 3.3449 41 1 10.6298 -4.6898 2.7462 42 1 8.1354 -0.7852 -0.1047 43 1 8.1538 -0.3236 1.6149 44 1 5.8195 -1.5573 0.0793 45 1 5.9189 0.1045 0.7148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021663549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:58 Heat of formation + Delta-G solvation = -108.550092 kcal Electronic energy + Delta-G solvation = -28677.800012 eV Core-core repulsion = 24559.662339 eV Total energy + Delta-G solvation = -4118.137673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.88206 -46.86732 -40.42612 -37.70314 -35.81860 -33.60543 -32.80284 -32.44269 -30.27466 -29.46690 -28.33054 -25.53633 -24.75086 -22.74218 -22.48342 -21.74907 -20.28742 -19.36671 -18.97941 -17.65090 -16.98887 -16.79927 -16.57509 -15.71684 -15.41470 -15.21234 -14.75260 -14.31064 -14.07292 -13.84499 -13.67855 -13.47646 -13.28934 -13.19459 -13.05766 -12.82434 -12.80132 -12.52243 -12.31990 -12.19489 -12.08650 -12.04336 -11.45123 -11.15652 -10.92387 -10.90589 -10.83601 -10.74743 -10.64228 -10.23290 -9.99207 -9.96315 -9.77287 -9.42726 -8.76821 -8.41343 -8.23467 -6.45349 -5.73950 -3.25915 2.71037 3.00292 3.41693 3.45718 3.47986 3.63303 3.88066 4.17361 4.23437 4.52699 4.68555 4.82419 4.87024 4.98335 5.01341 5.13155 5.25702 5.37846 5.45250 5.46335 5.48420 5.51478 5.57504 5.69269 5.76846 5.94005 5.97310 6.15421 6.27773 6.36134 6.44869 6.48848 6.61446 6.71049 6.86887 7.02551 7.10527 7.25327 7.42267 7.61984 7.76436 7.84938 8.34704 8.58125 9.30164 9.89472 10.49818 11.33252 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.003874 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.618597 B = 7226.329495 C = 8010.302582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.307 3.693 3 F -0.193 7.193 4 F -0.191 7.191 5 C -0.192 4.192 6 C 0.511 3.489 7 O -0.511 6.511 8 N -0.606 5.606 9 C 0.107 3.893 10 C -0.134 4.134 11 C -0.112 4.112 12 C -0.121 4.121 13 H 0.065 0.935 14 C 0.183 3.817 15 N -0.595 5.595 16 C -0.252 4.252 17 H 0.062 0.938 18 C 0.008 3.992 19 N -0.907 5.907 20 Si 0.904 3.096 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.140 3.860 25 C -0.122 4.122 26 C 0.158 3.842 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.055 0.945 43 H 0.014 0.986 44 H 0.061 0.939 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.259 4.872 4.139 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.270 3.730 3 F -0.174 7.174 4 F -0.172 7.172 5 C -0.233 4.233 6 C 0.298 3.702 7 O -0.387 6.387 8 N -0.340 5.340 9 C -0.016 4.016 10 C -0.172 4.172 11 C -0.150 4.150 12 C -0.143 4.143 13 H 0.083 0.917 14 C 0.057 3.943 15 N -0.317 5.317 16 C -0.382 4.382 17 H 0.079 0.921 18 C -0.190 4.190 19 N -0.552 5.552 20 Si 0.733 3.267 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.013 3.987 25 C -0.161 4.161 26 C 0.057 3.943 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.080 0.920 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.761 5.075 3.705 21.691 hybrid contribution 0.617 -0.645 -0.376 0.969 sum -20.144 4.430 3.328 20.892 Atomic orbital electron populations 1.22796 0.91559 1.05396 1.05458 1.20598 0.92751 0.76105 0.83548 1.93040 1.90588 1.36978 1.96791 1.93060 1.90553 1.80730 1.52870 1.22952 0.96553 1.04525 0.99260 1.20071 0.88537 0.79113 0.82522 1.90826 1.68196 1.43871 1.35772 1.48285 1.08275 1.57884 1.19525 1.21737 0.96101 0.95126 0.88654 1.21957 0.97921 0.95478 1.01828 1.21515 0.93256 1.01791 0.98432 1.22314 1.01276 0.94176 0.96504 0.91682 1.20823 0.84825 1.00759 0.87908 1.44035 1.51674 1.09801 1.26207 1.19144 1.08974 1.20690 0.89349 0.92082 1.25300 0.97248 1.00945 0.95552 1.69906 1.37214 1.39546 1.08510 0.86355 0.81051 0.79613 0.79634 1.20828 1.21615 1.20978 1.21138 0.91914 0.87368 0.98262 1.22539 0.96827 1.02242 0.94541 1.21348 0.76303 0.97169 0.99492 0.91755 0.89291 0.89756 0.89241 0.86333 0.86457 0.91322 0.90575 0.91144 0.91762 0.91527 0.92110 0.88825 0.96472 0.93588 0.92687 0.96829 0.92000 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 9.38 37.16 0.35 -0.92 16 2 C 0.31 3.48 1.85 -26.73 -0.05 3.43 16 3 F -0.19 -2.74 16.15 2.25 0.04 -2.71 16 4 F -0.19 -2.85 16.14 2.25 0.04 -2.81 16 5 C -0.19 -1.89 3.66 -27.89 -0.10 -2.00 16 6 C 0.51 7.73 7.35 -10.99 -0.08 7.65 16 7 O -0.51 -9.86 10.50 5.56 0.06 -9.80 16 8 N -0.61 -8.84 2.97 -165.32 -0.49 -9.33 16 9 C 0.11 1.10 6.34 -3.66 -0.02 1.08 16 10 C -0.13 -1.47 6.08 -26.49 -0.16 -1.64 16 11 C -0.11 -1.65 5.24 -26.65 -0.14 -1.79 16 12 C -0.12 -2.30 2.21 -90.54 -0.20 -2.50 16 13 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 14 C 0.18 4.37 4.55 -3.70 -0.02 4.35 16 15 N -0.59 -15.51 2.99 -172.25 -0.52 -16.03 16 16 C -0.25 -7.14 9.53 -15.06 -0.14 -7.29 16 17 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 18 C 0.01 0.22 5.23 -17.43 -0.09 0.13 16 19 N -0.91 -26.31 10.86 55.49 0.60 -25.71 16 20 Si 0.90 22.09 29.55 -169.99 -5.02 17.06 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 24 C 0.14 3.23 6.50 -3.68 -0.02 3.20 16 25 C -0.12 -2.53 3.82 -26.62 -0.10 -2.63 16 26 C 0.16 2.86 2.64 -67.73 -0.18 2.68 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.12 0.89 7.91 -51.93 -0.41 0.48 16 32 H 0.12 0.79 7.75 -51.93 -0.40 0.38 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.54 5.96 -51.93 -0.31 0.23 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 2.50 6.14 -51.93 -0.32 2.18 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.05 1.28 7.93 -51.93 -0.41 0.86 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 1.41 7.46 -51.93 -0.39 1.03 16 45 H 0.08 1.74 6.12 -51.93 -0.32 1.42 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -33.54 347.97 -8.19 -41.74 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.18 Total: -1.43 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.96 Total: 3.77 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.40 Total: -51.06 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.06 Total: -9.80 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.07 Total: -5.52 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.54 -8.19 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021663549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.815 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds