Wall clock time and date at job start Tue Mar 31 2020 11:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 O 1.21283 * 120.00261 * 120.00003 * 3 2 1 5 5 N 1.34777 * 120.00075 * 300.00543 * 3 2 1 6 6 C 1.46500 * 120.00084 * 180.02562 * 5 3 2 7 7 H 1.08998 * 112.84877 * 25.32535 * 6 5 3 8 8 C 1.53777 * 113.61599 * 156.52635 * 6 5 3 9 9 C 1.53778 * 87.08427 * 139.97656 * 8 6 5 10 10 H 1.09001 * 113.61201 * 89.19442 * 9 8 6 11 11 N 1.46498 * 113.61886 * 220.01679 * 9 8 6 12 12 C 1.36930 * 120.00257 * 204.99873 * 11 9 8 13 13 H 1.08002 * 119.99884 * 0.02562 * 12 11 9 14 14 C 1.38814 * 120.00294 * 179.97438 * 12 11 9 15 15 N 1.31620 * 119.99650 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00292 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47096 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47108 * 120.00256 * 16 14 12 19 19 H 1.48499 * 109.46995 * 240.00051 * 16 14 12 20 20 C 1.53783 * 113.61089 * 254.13249 * 6 5 3 21 21 C 1.52999 * 109.47317 * 239.99868 * 2 1 3 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 2 1 23 23 C 1.52997 * 109.46733 * 299.99162 * 22 21 2 24 24 F 1.39898 * 109.47649 * 300.00279 * 23 22 21 25 25 F 1.39901 * 109.47194 * 179.97438 * 23 22 21 26 26 C 1.53002 * 109.46965 * 60.00506 * 23 22 21 27 27 C 1.52997 * 109.47092 * 299.99543 * 26 23 22 28 28 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 0.96996 * 119.99636 * 359.97438 * 5 3 2 32 32 H 1.09003 * 113.61601 * 254.52850 * 8 6 5 33 33 H 1.09006 * 113.61640 * 25.34309 * 8 6 5 34 34 H 0.97006 * 119.99420 * 25.00360 * 11 9 8 35 35 H 0.96996 * 120.00070 * 179.97438 * 15 14 12 36 36 H 1.08997 * 113.61484 * 334.56823 * 20 6 5 37 37 H 1.08998 * 113.61075 * 105.46781 * 20 6 5 38 38 H 1.09002 * 109.46716 * 60.00091 * 21 2 1 39 39 H 1.09000 * 109.47486 * 180.02562 * 21 2 1 40 40 H 1.09001 * 109.46812 * 179.97438 * 22 21 2 41 41 H 1.08992 * 109.47061 * 59.99386 * 22 21 2 42 42 H 1.09002 * 109.47067 * 179.97438 * 26 23 22 43 43 H 1.09000 * 109.47312 * 59.99663 * 26 23 22 44 44 H 1.09000 * 109.47140 * 300.00226 * 27 26 23 45 45 H 1.09001 * 109.47375 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.7297 1.8174 0.9096 5 7 1.7068 2.2507 -1.0108 6 6 2.1956 3.6317 -1.0111 7 1 3.1158 3.7551 -0.4399 8 6 2.2497 4.2658 -2.4110 9 6 1.7322 5.5590 -1.7593 10 1 2.5253 6.2111 -1.3935 11 7 0.7407 6.2691 -2.5709 12 6 0.5678 7.6185 -2.4149 13 1 1.1627 8.1593 -1.6938 14 6 -0.3713 8.2915 -3.1843 15 7 -1.0960 7.6324 -4.0635 16 14 -0.6067 10.1323 -2.9720 17 1 0.3233 10.6331 -1.9282 18 1 -0.3231 10.8192 -4.2578 19 1 -2.0070 10.4082 -2.5618 20 6 1.1132 4.6684 -0.6667 21 6 2.0400 -0.7213 -1.2492 22 6 1.5299 -2.1638 -1.2493 23 6 2.0400 -2.8850 -0.0001 24 9 3.4390 -2.8851 -0.0001 25 9 1.5732 -4.2038 0.0002 26 6 1.5300 -2.1638 1.2492 27 6 2.0400 -0.7214 1.2492 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.1493 1.9334 -1.7384 32 1 3.2595 4.3528 -2.8122 33 1 1.5499 3.8216 -3.1189 34 1 0.2066 5.7834 -3.2188 35 1 -1.7525 8.1026 -4.6009 36 1 0.1010 4.3355 -0.8963 37 1 1.2067 5.0798 0.3383 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 1.8929 -2.6774 -2.1395 41 1 0.4400 -2.1637 -1.2492 42 1 1.8930 -2.6779 2.1392 43 1 0.4400 -2.1638 1.2492 44 1 3.1300 -0.7214 1.2492 45 1 1.6771 -0.2076 2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022302877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:47 Heat of formation + Delta-G solvation = -126.373899 kcal Electronic energy + Delta-G solvation = -27134.515675 eV Core-core repulsion = 23015.605103 eV Total energy + Delta-G solvation = -4118.910571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.27377 -47.25534 -40.70586 -38.68135 -37.27826 -34.18650 -32.93701 -31.62465 -31.43592 -29.80544 -27.22670 -25.16785 -24.87989 -23.64512 -23.59293 -22.00904 -20.69392 -19.63988 -18.92038 -17.79605 -17.37432 -17.05992 -16.66769 -16.59290 -16.30303 -15.25359 -15.03145 -14.79693 -14.41902 -14.26001 -14.03641 -13.92944 -13.52874 -13.44662 -13.20117 -13.08030 -12.89861 -12.79059 -12.57815 -12.14456 -12.08597 -11.97129 -11.93416 -11.87985 -11.43206 -11.28893 -10.99690 -10.95099 -10.65796 -10.54573 -10.46862 -10.35246 -10.05629 -9.73995 -9.53130 -8.95058 -8.78545 -7.02188 -5.83922 -3.12722 2.60422 3.15320 3.39672 3.40032 3.46099 3.47893 3.67296 3.95289 3.97790 4.30199 4.44343 4.54989 4.60093 4.62268 4.76139 4.81355 5.00541 5.01897 5.16516 5.19849 5.25355 5.31101 5.33888 5.40876 5.44116 5.48172 5.51182 5.57726 5.69149 5.82929 5.85445 5.91659 5.97333 6.08919 6.21061 6.26988 6.47065 6.57479 6.71309 7.02265 7.58210 7.66182 8.24652 8.34647 9.46174 10.02504 10.37021 11.38556 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.002344 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.708870 B =11944.692966 C =12143.156522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C 0.523 3.477 4 O -0.541 6.541 5 N -0.711 5.711 6 C 0.117 3.883 7 H 0.108 0.892 8 C -0.158 4.158 9 C 0.169 3.831 10 H 0.080 0.920 11 N -0.710 5.710 12 C -0.243 4.243 13 H 0.073 0.927 14 C -0.013 4.013 15 N -0.933 5.933 16 Si 0.908 3.092 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.176 4.176 21 C -0.108 4.108 22 C -0.158 4.158 23 C 0.287 3.713 24 F -0.198 7.198 25 F -0.204 7.204 26 C -0.160 4.160 27 C -0.094 4.094 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 -22.931 6.906 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C 0.309 3.691 4 O -0.418 6.418 5 N -0.360 5.360 6 C 0.012 3.988 7 H 0.126 0.874 8 C -0.198 4.198 9 C 0.056 3.944 10 H 0.098 0.902 11 N -0.348 5.348 12 C -0.374 4.374 13 H 0.091 0.909 14 C -0.209 4.209 15 N -0.581 5.581 16 Si 0.739 3.261 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.218 4.218 21 C -0.146 4.146 22 C -0.196 4.196 23 C 0.251 3.749 24 F -0.179 7.179 25 F -0.185 7.185 26 C -0.198 4.198 27 C -0.132 4.132 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.838 -22.438 7.578 24.172 hybrid contribution -0.643 0.469 -0.525 0.954 sum 4.194 -21.968 7.053 23.451 Atomic orbital electron populations 1.22006 0.92151 1.02946 1.03438 1.20871 0.97622 0.92903 0.97250 1.20300 0.79967 0.86767 0.82083 1.90693 1.38056 1.77302 1.35750 1.46058 1.52803 1.12470 1.24696 1.22502 0.98828 0.78729 0.98695 0.87407 1.23853 1.01639 0.98868 0.95467 1.21380 0.92172 0.89904 0.90938 0.90246 1.42359 1.42150 1.06053 1.44234 1.19359 1.16535 0.84419 1.17136 0.90934 1.24768 0.99100 0.98192 0.98849 1.69663 1.26779 1.34891 1.26769 0.86107 0.77520 0.85241 0.77273 1.20467 1.21821 1.21829 1.24351 0.98621 0.97553 1.01273 1.21565 1.02287 0.93532 0.97166 1.22551 1.03652 0.96704 0.96666 1.21142 0.75759 0.79056 0.98964 1.93005 1.30724 1.96514 1.97686 1.93008 1.88425 1.39349 1.97716 1.22613 1.03484 0.97189 0.96499 1.21338 1.02325 0.92165 0.97345 0.91478 0.91438 0.91135 0.76723 0.91494 0.90006 0.78112 0.93492 0.90252 0.92277 0.89696 0.90130 0.89041 0.88163 0.89151 0.88390 0.90041 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.68 37.16 0.29 -0.74 16 2 C -0.08 -0.71 0.61 -155.66 -0.10 -0.81 16 3 C 0.52 6.45 6.48 -10.99 -0.07 6.38 16 4 O -0.54 -8.81 15.60 5.55 0.09 -8.72 16 5 N -0.71 -8.34 5.15 -53.02 -0.27 -8.61 16 6 C 0.12 1.67 4.21 -67.12 -0.28 1.39 16 7 H 0.11 1.64 7.50 -51.93 -0.39 1.25 16 8 C -0.16 -2.38 7.58 -25.92 -0.20 -2.57 16 9 C 0.17 3.19 4.48 -67.03 -0.30 2.89 16 10 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 11 N -0.71 -17.13 5.40 -52.55 -0.28 -17.41 16 12 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 15 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 16 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 C -0.18 -2.97 7.69 -25.82 -0.20 -3.17 16 21 C -0.11 -0.78 4.51 -26.73 -0.12 -0.90 16 22 C -0.16 -1.00 5.18 -26.73 -0.14 -1.14 16 23 C 0.29 2.34 2.10 -26.73 -0.06 2.29 16 24 F -0.20 -2.05 16.02 2.25 0.04 -2.01 16 25 F -0.20 -1.93 17.06 2.25 0.04 -1.89 16 26 C -0.16 -1.12 5.18 -26.73 -0.14 -1.26 16 27 C -0.09 -0.82 3.90 -26.73 -0.10 -0.93 16 28 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.36 4.81 -51.93 -0.25 0.11 16 31 H 0.40 3.78 7.55 -40.82 -0.31 3.47 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 34 H 0.38 9.77 7.93 -40.82 -0.32 9.44 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.50 7.56 -51.93 -0.39 0.11 16 39 H 0.08 0.68 7.80 -51.93 -0.41 0.27 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.48 6.43 -51.93 -0.33 0.15 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.53 6.43 -51.93 -0.33 0.20 16 44 H 0.08 0.84 7.76 -51.93 -0.40 0.44 16 45 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -31.91 358.85 -7.83 -39.73 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.88 Total: 9.07 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.66 Total: -5.78 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.17 Total: -52.81 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.07 Total: -3.90 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.91 -7.83 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022302877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.641 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds