Wall clock time and date at job start Tue Mar 31 2020 11:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 O 1.21283 * 120.00261 * 120.00003 * 3 2 1 5 5 N 1.34777 * 120.00075 * 300.00543 * 3 2 1 6 6 C 1.46500 * 120.00084 * 180.02562 * 5 3 2 7 7 H 1.08998 * 112.84877 * 25.32535 * 6 5 3 8 8 C 1.53777 * 113.61599 * 156.52635 * 6 5 3 9 9 C 1.53778 * 87.08427 * 139.97656 * 8 6 5 10 10 H 1.09001 * 113.61201 * 89.19442 * 9 8 6 11 11 N 1.46498 * 113.61886 * 220.01679 * 9 8 6 12 12 C 1.36930 * 120.00257 * 204.99873 * 11 9 8 13 13 H 1.08002 * 119.99884 * 0.02562 * 12 11 9 14 14 C 1.38814 * 120.00294 * 179.97438 * 12 11 9 15 15 N 1.31620 * 119.99650 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00292 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47096 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47108 * 120.00256 * 16 14 12 19 19 H 1.48499 * 109.46995 * 240.00051 * 16 14 12 20 20 C 1.53783 * 113.61089 * 254.13249 * 6 5 3 21 21 C 1.52999 * 109.47317 * 239.99868 * 2 1 3 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 2 1 23 23 C 1.52997 * 109.46733 * 299.99162 * 22 21 2 24 24 F 1.39898 * 109.47649 * 300.00279 * 23 22 21 25 25 F 1.39901 * 109.47194 * 179.97438 * 23 22 21 26 26 C 1.53002 * 109.46965 * 60.00506 * 23 22 21 27 27 C 1.52997 * 109.47092 * 299.99543 * 26 23 22 28 28 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 0.96996 * 119.99636 * 359.97438 * 5 3 2 32 32 H 1.09003 * 113.61601 * 254.52850 * 8 6 5 33 33 H 1.09006 * 113.61640 * 25.34309 * 8 6 5 34 34 H 0.97006 * 119.99420 * 25.00360 * 11 9 8 35 35 H 0.96996 * 120.00070 * 179.97438 * 15 14 12 36 36 H 1.08997 * 113.61484 * 334.56823 * 20 6 5 37 37 H 1.08998 * 113.61075 * 105.46781 * 20 6 5 38 38 H 1.09002 * 109.46716 * 60.00091 * 21 2 1 39 39 H 1.09000 * 109.47486 * 180.02562 * 21 2 1 40 40 H 1.09001 * 109.46812 * 179.97438 * 22 21 2 41 41 H 1.08992 * 109.47061 * 59.99386 * 22 21 2 42 42 H 1.09002 * 109.47067 * 179.97438 * 26 23 22 43 43 H 1.09000 * 109.47312 * 59.99663 * 26 23 22 44 44 H 1.09000 * 109.47140 * 300.00226 * 27 26 23 45 45 H 1.09001 * 109.47375 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.7297 1.8174 0.9096 5 7 1.7068 2.2507 -1.0108 6 6 2.1956 3.6317 -1.0111 7 1 3.1158 3.7551 -0.4399 8 6 2.2497 4.2658 -2.4110 9 6 1.7322 5.5590 -1.7593 10 1 2.5253 6.2111 -1.3935 11 7 0.7407 6.2691 -2.5709 12 6 0.5678 7.6185 -2.4149 13 1 1.1627 8.1593 -1.6938 14 6 -0.3713 8.2915 -3.1843 15 7 -1.0960 7.6324 -4.0635 16 14 -0.6067 10.1323 -2.9720 17 1 0.3233 10.6331 -1.9282 18 1 -0.3231 10.8192 -4.2578 19 1 -2.0070 10.4082 -2.5618 20 6 1.1132 4.6684 -0.6667 21 6 2.0400 -0.7213 -1.2492 22 6 1.5299 -2.1638 -1.2493 23 6 2.0400 -2.8850 -0.0001 24 9 3.4390 -2.8851 -0.0001 25 9 1.5732 -4.2038 0.0002 26 6 1.5300 -2.1638 1.2492 27 6 2.0400 -0.7214 1.2492 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.1493 1.9334 -1.7384 32 1 3.2595 4.3528 -2.8122 33 1 1.5499 3.8216 -3.1189 34 1 0.2066 5.7834 -3.2188 35 1 -1.7525 8.1026 -4.6009 36 1 0.1010 4.3355 -0.8963 37 1 1.2067 5.0798 0.3383 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 1.8929 -2.6774 -2.1395 41 1 0.4400 -2.1637 -1.2492 42 1 1.8930 -2.6779 2.1392 43 1 0.4400 -2.1638 1.2492 44 1 3.1300 -0.7214 1.2492 45 1 1.6771 -0.2076 2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022302877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:46 Heat of formation + Delta-G solvation = -146.429887 kcal Electronic energy + Delta-G solvation = -27135.385368 eV Core-core repulsion = 23015.605103 eV Total energy + Delta-G solvation = -4119.780264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.95415 -47.95364 -41.63975 -39.86850 -38.27513 -35.79276 -34.36052 -32.41251 -32.18579 -31.48934 -27.81188 -26.58542 -26.44253 -24.88480 -24.21238 -23.18851 -21.65989 -20.91005 -19.83465 -19.15165 -18.45133 -18.06166 -17.63459 -17.32555 -17.21387 -16.47348 -16.17075 -16.04709 -15.70341 -15.34270 -14.94110 -14.74790 -14.71186 -14.47787 -14.25672 -14.15245 -13.72606 -13.54647 -13.39373 -13.29223 -13.15792 -13.14475 -12.85006 -12.74746 -12.59176 -12.50670 -12.20154 -12.15292 -12.05026 -12.00668 -11.73592 -11.61298 -11.49531 -11.09407 -10.88134 -10.61124 -9.96148 -8.97842 -7.95404 -5.22946 1.48045 1.48734 1.58391 1.62346 2.18577 2.57171 2.80996 3.10044 3.28005 3.36606 3.40733 3.65805 3.69466 3.77849 3.88677 3.89378 3.98007 4.03776 4.08931 4.27701 4.28083 4.32486 4.47785 4.61593 4.69822 4.74281 4.78276 4.89033 4.89767 4.91324 4.91709 4.93550 4.96997 5.10766 5.16321 5.17300 5.21444 5.39448 5.40843 5.52072 5.69666 6.27580 6.60623 7.27389 7.34309 8.09846 8.33443 9.27829 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.002344 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.708870 B =11944.692966 C =12143.156522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C 0.521 3.479 4 O -0.584 6.584 5 N -0.701 5.701 6 C 0.136 3.864 7 H 0.102 0.898 8 C -0.139 4.139 9 C 0.149 3.851 10 H 0.076 0.924 11 N -0.723 5.723 12 C -0.243 4.243 13 H 0.074 0.926 14 C -0.074 4.074 15 N -0.967 5.967 16 Si 0.969 3.031 17 H -0.268 1.268 18 H -0.293 1.293 19 H -0.294 1.294 20 C -0.169 4.169 21 C -0.105 4.105 22 C -0.152 4.152 23 C 0.278 3.722 24 F -0.215 7.215 25 F -0.211 7.211 26 C -0.154 4.154 27 C -0.092 4.092 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.413 0.587 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.058 0.942 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -24.170 6.691 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 C 0.308 3.692 4 O -0.464 6.464 5 N -0.352 5.352 6 C 0.030 3.970 7 H 0.120 0.880 8 C -0.178 4.178 9 C 0.038 3.962 10 H 0.094 0.906 11 N -0.360 5.360 12 C -0.375 4.375 13 H 0.092 0.908 14 C -0.266 4.266 15 N -0.618 5.618 16 Si 0.799 3.201 17 H -0.193 1.193 18 H -0.220 1.220 19 H -0.222 1.222 20 C -0.211 4.211 21 C -0.143 4.143 22 C -0.190 4.190 23 C 0.242 3.758 24 F -0.196 7.196 25 F -0.192 7.192 26 C -0.191 4.191 27 C -0.130 4.130 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.250 0.750 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.077 0.923 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.396 -23.715 7.381 25.223 hybrid contribution -0.421 0.807 -0.375 0.985 sum 3.975 -22.908 7.005 24.282 Atomic orbital electron populations 1.22056 0.90296 1.04651 1.03496 1.20842 0.98881 0.90147 0.97894 1.21006 0.78956 0.88123 0.81098 1.90678 1.39991 1.78372 1.37373 1.45910 1.52732 1.11314 1.25204 1.22101 0.97444 0.79707 0.97755 0.88028 1.23652 1.02356 0.96025 0.95769 1.21699 0.91511 0.91103 0.91859 0.90633 1.42490 1.43290 1.05361 1.44902 1.19709 1.15639 0.85955 1.16189 0.90769 1.25508 0.99615 1.02146 0.99350 1.69795 1.27740 1.36216 1.28030 0.85135 0.77199 0.80651 0.77163 1.19267 1.22029 1.22151 1.24175 0.99005 0.97983 0.99904 1.21563 1.01426 0.94298 0.96984 1.22575 1.04983 0.95476 0.95940 1.21503 0.74951 0.78934 1.00440 1.92975 1.32284 1.96569 1.97820 1.92993 1.88399 1.39975 1.97818 1.22593 1.04747 0.95530 0.96250 1.21269 1.00990 0.93445 0.97281 0.90539 0.92360 0.88617 0.75015 0.90073 0.89149 0.79112 0.93996 0.90842 0.93118 0.87804 0.91696 0.88197 0.85797 0.88941 0.86084 0.92277 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 7.68 71.98 0.55 -1.05 16 2 C -0.07 -1.14 0.61 -52.93 -0.03 -1.17 16 3 C 0.52 12.25 6.48 87.66 0.57 12.81 16 4 O -0.58 -19.02 15.60 -3.04 -0.05 -19.06 16 5 N -0.70 -15.18 5.15 -440.04 -2.26 -17.45 16 6 C 0.14 3.70 4.21 45.52 0.19 3.89 16 7 H 0.10 3.00 7.50 -2.39 -0.02 2.98 16 8 C -0.14 -3.92 7.58 31.12 0.24 -3.68 16 9 C 0.15 5.54 4.48 45.58 0.20 5.75 16 10 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 11 N -0.72 -34.83 5.40 -320.17 -1.73 -36.56 16 12 C -0.24 -13.18 9.97 84.04 0.84 -12.35 16 13 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 14 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 15 N -0.97 -57.55 13.06 21.65 0.28 -57.27 16 16 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 20 C -0.17 -5.60 7.69 31.18 0.24 -5.36 16 21 C -0.10 -1.26 4.51 30.60 0.14 -1.12 16 22 C -0.15 -1.47 5.18 30.59 0.16 -1.31 16 23 C 0.28 4.01 2.10 30.59 0.06 4.07 16 24 F -0.22 -4.31 16.02 44.97 0.72 -3.59 16 25 F -0.21 -3.55 17.06 44.97 0.77 -2.79 16 26 C -0.15 -1.85 5.18 30.59 0.16 -1.70 16 27 C -0.09 -1.53 3.90 30.60 0.12 -1.41 16 28 H 0.08 0.71 7.56 -2.39 -0.02 0.70 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.57 4.81 -2.38 -0.01 0.56 16 31 H 0.41 6.68 7.55 -92.71 -0.70 5.98 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 2.45 8.09 -2.38 -0.02 2.43 16 34 H 0.38 19.16 7.93 -92.70 -0.73 18.43 16 35 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.10 0.87 7.56 -2.39 -0.02 0.85 16 39 H 0.06 1.01 7.80 -2.39 -0.02 0.99 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.12 0.63 6.43 -2.39 -0.02 0.62 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.12 0.91 6.43 -2.39 -0.02 0.89 16 44 H 0.06 1.25 7.76 -2.39 -0.02 1.23 16 45 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 Total: -1.00 -69.63 358.85 3.24 -66.39 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.41 Total: 29.16 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 3.90 Total: -6.30 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -3.71 Total: -111.28 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.06 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 1.49 Total: -6.37 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.63 3.24 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022302877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.038 kcal (2) G-P(sol) polarization free energy of solvation -69.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds