Wall clock time and date at job start Tue Mar 31 2020 11:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00003 * 2 1 4 4 H 1.48503 * 109.46944 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47151 * 300.00297 * 3 2 1 6 6 H 1.48492 * 109.47148 * 60.00292 * 3 2 1 7 7 C 1.38817 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99819 * 194.33525 * 7 2 1 9 9 N 1.36932 * 120.00128 * 14.33133 * 7 2 1 10 10 C 1.46964 * 120.65023 * 30.93975 * 9 7 2 11 11 C 1.53199 * 108.88665 * 126.46388 * 10 9 7 12 12 C 1.53044 * 109.31088 * 54.55691 * 11 10 9 13 13 C 1.53038 * 109.53912 * 298.63512 * 12 11 10 14 14 C 1.46919 * 120.63358 * 210.75985 * 9 7 2 15 15 H 1.09001 * 109.59138 * 113.68006 * 14 9 7 16 16 C 1.52998 * 109.58654 * 353.39295 * 14 9 7 17 17 N 1.46501 * 109.46869 * 60.62947 * 16 14 9 18 18 C 1.34778 * 120.00158 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99989 * 359.97438 * 18 17 16 20 20 C 1.50703 * 120.00159 * 180.02562 * 18 17 16 21 21 H 1.09006 * 110.05459 * 301.41604 * 20 18 17 22 22 C 1.53872 * 110.03274 * 180.02562 * 20 18 17 23 23 C 1.54265 * 106.59872 * 240.71142 * 22 20 18 24 24 C 1.54889 * 104.31218 * 336.32940 * 23 22 20 25 25 F 1.39897 * 110.75992 * 156.32397 * 24 23 22 26 26 F 1.39910 * 110.75166 * 279.68713 * 24 23 22 27 27 C 1.54265 * 110.03421 * 62.82802 * 20 18 17 28 28 H 0.97008 * 119.99867 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.59733 * 6.60721 * 10 9 7 30 30 H 1.09004 * 109.46900 * 246.24480 * 10 9 7 31 31 H 1.08998 * 109.49631 * 294.60723 * 11 10 9 32 32 H 1.08996 * 109.52393 * 174.52188 * 11 10 9 33 33 H 1.09000 * 109.45726 * 178.61761 * 12 11 10 34 34 H 1.09004 * 109.45888 * 58.65698 * 12 11 10 35 35 H 1.09004 * 109.49790 * 301.41990 * 13 12 11 36 36 H 1.08994 * 109.52764 * 181.33037 * 13 12 11 37 37 H 1.08995 * 109.47689 * 300.62952 * 16 14 9 38 38 H 1.09001 * 109.47328 * 180.62584 * 16 14 9 39 39 H 0.97008 * 120.00158 * 359.97438 * 17 16 14 40 40 H 1.09006 * 110.03254 * 121.42881 * 22 20 18 41 41 H 1.09003 * 110.07382 * 0.02562 * 22 20 18 42 42 H 1.08999 * 110.48541 * 95.06490 * 23 22 20 43 43 H 1.08992 * 110.49078 * 217.57938 * 23 22 20 44 44 H 1.08992 * 110.49109 * 261.57797 * 27 20 18 45 45 H 1.09004 * 110.48447 * 24.09164 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0650 -1.2168 0.2310 9 7 1.3576 -2.3695 -0.2946 10 6 0.2153 -2.3768 -1.2192 11 6 0.4746 -3.4105 -2.3197 12 6 0.7733 -4.7678 -1.6789 13 6 2.0300 -4.6592 -0.8123 14 6 1.7883 -3.6396 0.3052 15 1 1.0121 -4.0092 0.9753 16 6 3.0833 -3.4228 1.0906 17 7 2.8489 -2.4486 2.1594 18 6 3.8549 -2.0998 2.9858 19 8 4.9540 -2.5928 2.8450 20 6 3.6136 -1.0981 4.0856 21 1 3.2652 -0.1557 3.6630 22 6 4.9089 -0.8701 4.8843 23 6 4.6096 -1.2893 6.3384 24 6 3.0719 -1.1550 6.4668 25 9 2.5866 -1.9732 7.4926 26 9 2.7068 0.1787 6.6798 27 6 2.5719 -1.6477 5.0818 28 1 -0.4850 0.8401 0.0004 29 1 0.0999 -1.3891 -1.6656 30 1 -0.6911 -2.6422 -0.6749 31 1 1.3281 -3.0960 -2.9204 32 1 -0.4066 -3.4945 -2.9556 33 1 0.9341 -5.5107 -2.4602 34 1 -0.0705 -5.0701 -1.0587 35 1 2.8689 -4.3329 -1.4272 36 1 2.2561 -5.6316 -0.3749 37 1 3.8564 -3.0476 0.4201 38 1 3.4071 -4.3684 1.5255 39 1 1.9697 -2.0546 2.2723 40 1 5.1887 0.1829 4.8493 41 1 5.7126 -1.4833 4.4767 42 1 4.9179 -2.3207 6.5092 43 1 5.1107 -0.6214 7.0389 44 1 1.5846 -1.2397 4.8653 45 1 2.5493 -2.7370 5.0480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024474079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:12 Heat of formation + Delta-G solvation = -134.457733 kcal Electronic energy + Delta-G solvation = -28283.583372 eV Core-core repulsion = 24164.322259 eV Total energy + Delta-G solvation = -4119.261113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.85050 -47.02496 -39.73868 -37.95463 -36.33780 -34.24084 -33.11765 -31.03054 -29.98021 -29.24720 -28.13036 -25.98494 -24.75512 -22.26333 -21.91073 -21.25361 -20.63485 -19.48216 -19.05862 -17.84451 -17.01796 -16.64567 -16.24801 -15.89740 -15.56288 -15.18523 -14.98624 -14.19523 -14.05224 -14.03902 -13.77339 -13.52574 -13.41612 -13.34477 -12.99515 -12.89928 -12.52411 -12.35039 -12.16824 -12.08040 -11.78566 -11.43527 -11.40060 -11.20015 -11.01837 -10.82641 -10.70620 -10.63541 -10.58179 -10.32690 -10.18494 -10.04048 -9.60918 -9.49400 -9.26467 -8.64664 -8.29650 -6.71865 -5.89840 -3.35982 3.04447 3.27087 3.37976 3.40058 3.58162 3.78225 3.80011 4.18185 4.37542 4.42650 4.97268 5.10155 5.13590 5.18682 5.25749 5.26913 5.30362 5.45469 5.46592 5.59217 5.62158 5.64710 5.78044 5.91165 5.93250 6.01116 6.06647 6.10625 6.23290 6.26268 6.32218 6.37018 6.55298 6.66454 6.69282 6.81330 6.93007 7.11216 7.33420 7.59797 7.73655 8.17270 8.34723 8.76401 9.10413 9.72251 10.30533 11.16953 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.004619 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.603411 B = 6060.843524 C = 7012.874449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.008 3.992 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.252 4.252 8 H 0.071 0.929 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.031 0.969 16 C 0.134 3.866 17 N -0.690 5.690 18 C 0.516 3.484 19 O -0.560 6.560 20 C -0.113 4.113 21 H 0.111 0.889 22 C -0.116 4.116 23 C -0.154 4.154 24 C 0.275 3.725 25 F -0.198 7.198 26 F -0.191 7.191 27 C -0.147 4.147 28 H 0.254 0.746 29 H 0.084 0.916 30 H 0.018 0.982 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.416 0.584 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.933 -5.095 7.358 9.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.049 0.951 16 C 0.010 3.990 17 N -0.340 5.340 18 C 0.301 3.699 19 O -0.440 6.440 20 C -0.134 4.134 21 H 0.129 0.871 22 C -0.154 4.154 23 C -0.192 4.192 24 C 0.239 3.761 25 F -0.179 7.179 26 F -0.172 7.172 27 C -0.185 4.185 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.254 0.746 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.552 -5.285 7.276 10.079 hybrid contribution -0.284 1.282 0.018 1.313 sum 4.268 -4.003 7.295 9.351 Atomic orbital electron populations 1.70014 1.05137 1.25441 1.53545 1.25069 0.95184 0.98104 1.00763 0.86420 0.79674 0.84431 0.77579 1.20166 1.21505 1.21505 1.19238 0.92110 0.84047 1.42769 0.91181 1.44077 1.36051 1.01858 1.49227 1.20764 0.88507 0.97506 0.88437 1.22194 0.99985 0.96557 0.99620 1.21361 0.97562 0.97372 0.98205 1.21939 0.98209 0.98240 0.98321 1.20727 0.93203 0.88536 0.92222 0.95100 1.21306 0.98338 0.90709 0.88683 1.46005 1.14113 1.43507 1.30334 1.20118 0.84658 0.82436 0.82719 1.90608 1.24159 1.55974 1.73282 1.21827 0.96498 1.00144 0.94954 0.87138 1.22131 0.98070 1.03163 0.92005 1.23298 0.91610 1.04821 0.99504 1.22103 0.94835 0.73327 0.85810 1.92987 1.89971 1.72419 1.62478 1.93013 1.93162 1.35402 1.95659 1.23306 1.00716 1.03535 0.90962 0.93617 0.89799 0.96357 0.92844 0.93514 0.93714 0.92876 0.92098 0.93034 0.91538 0.92661 0.74647 0.90472 0.87706 0.88369 0.89206 0.88057 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.68 11.24 55.49 0.62 -23.05 16 2 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16 3 Si 0.89 20.43 29.58 -169.99 -5.03 15.40 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.05 7.01 -15.06 -0.11 -6.16 16 8 H 0.07 1.73 5.84 -52.49 -0.31 1.43 16 9 N -0.59 -12.93 2.98 -164.74 -0.49 -13.42 16 10 C 0.17 3.80 5.27 -3.69 -0.02 3.78 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.11 -1.71 5.88 -26.69 -0.16 -1.86 16 13 C -0.13 -2.06 5.37 -26.61 -0.14 -2.21 16 14 C 0.16 2.96 3.00 -67.60 -0.20 2.76 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 16 C 0.13 2.40 4.43 -4.04 -0.02 2.38 16 17 N -0.69 -12.26 3.80 -60.29 -0.23 -12.49 16 18 C 0.52 8.88 6.99 -10.98 -0.08 8.80 16 19 O -0.56 -10.99 15.21 5.56 0.08 -10.91 16 20 C -0.11 -1.60 3.30 -90.65 -0.30 -1.90 16 21 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 22 C -0.12 -1.45 6.40 -25.62 -0.16 -1.61 16 23 C -0.15 -1.68 6.42 -25.07 -0.16 -1.84 16 24 C 0.28 3.47 2.52 -24.53 -0.06 3.41 16 25 F -0.20 -2.64 17.22 2.25 0.04 -2.60 16 26 F -0.19 -2.68 17.22 2.25 0.04 -2.64 16 27 C -0.15 -1.86 5.94 -24.87 -0.15 -2.01 16 28 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.08 2.09 6.20 -51.93 -0.32 1.77 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.32 7.40 -51.93 -0.38 0.94 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.42 7.73 7.43 -40.82 -0.30 7.43 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.44 6.40 -51.93 -0.33 1.11 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.10 1.23 7.85 -51.93 -0.41 0.82 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -27.23 355.55 -8.52 -35.75 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.11 Total: 7.72 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.80 Total: 0.88 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.10 Total: -48.96 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.08 Total: -5.24 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.23 -8.52 -35.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024474079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.711 kcal (2) G-P(sol) polarization free energy of solvation -27.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds