Wall clock time and date at job start Tue Mar 31 2020 11:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00003 * 2 1 4 4 H 1.48503 * 109.46944 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47151 * 300.00297 * 3 2 1 6 6 H 1.48492 * 109.47148 * 60.00292 * 3 2 1 7 7 C 1.38817 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99819 * 194.33525 * 7 2 1 9 9 N 1.36932 * 120.00128 * 14.33133 * 7 2 1 10 10 C 1.46964 * 120.65023 * 30.93975 * 9 7 2 11 11 C 1.53199 * 108.88665 * 126.46388 * 10 9 7 12 12 C 1.53044 * 109.31088 * 54.55691 * 11 10 9 13 13 C 1.53038 * 109.53912 * 298.63512 * 12 11 10 14 14 C 1.46919 * 120.63358 * 210.75985 * 9 7 2 15 15 H 1.09001 * 109.59138 * 113.68006 * 14 9 7 16 16 C 1.52998 * 109.58654 * 353.39295 * 14 9 7 17 17 N 1.46501 * 109.46869 * 60.62947 * 16 14 9 18 18 C 1.34778 * 120.00158 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99989 * 359.97438 * 18 17 16 20 20 C 1.50703 * 120.00159 * 180.02562 * 18 17 16 21 21 H 1.09006 * 110.05459 * 301.41604 * 20 18 17 22 22 C 1.53872 * 110.03274 * 180.02562 * 20 18 17 23 23 C 1.54265 * 106.59872 * 240.71142 * 22 20 18 24 24 C 1.54889 * 104.31218 * 336.32940 * 23 22 20 25 25 F 1.39897 * 110.75992 * 156.32397 * 24 23 22 26 26 F 1.39910 * 110.75166 * 279.68713 * 24 23 22 27 27 C 1.54265 * 110.03421 * 62.82802 * 20 18 17 28 28 H 0.97008 * 119.99867 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.59733 * 6.60721 * 10 9 7 30 30 H 1.09004 * 109.46900 * 246.24480 * 10 9 7 31 31 H 1.08998 * 109.49631 * 294.60723 * 11 10 9 32 32 H 1.08996 * 109.52393 * 174.52188 * 11 10 9 33 33 H 1.09000 * 109.45726 * 178.61761 * 12 11 10 34 34 H 1.09004 * 109.45888 * 58.65698 * 12 11 10 35 35 H 1.09004 * 109.49790 * 301.41990 * 13 12 11 36 36 H 1.08994 * 109.52764 * 181.33037 * 13 12 11 37 37 H 1.08995 * 109.47689 * 300.62952 * 16 14 9 38 38 H 1.09001 * 109.47328 * 180.62584 * 16 14 9 39 39 H 0.97008 * 120.00158 * 359.97438 * 17 16 14 40 40 H 1.09006 * 110.03254 * 121.42881 * 22 20 18 41 41 H 1.09003 * 110.07382 * 0.02562 * 22 20 18 42 42 H 1.08999 * 110.48541 * 95.06490 * 23 22 20 43 43 H 1.08992 * 110.49078 * 217.57938 * 23 22 20 44 44 H 1.08992 * 110.49109 * 261.57797 * 27 20 18 45 45 H 1.09004 * 110.48447 * 24.09164 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0650 -1.2168 0.2310 9 7 1.3576 -2.3695 -0.2946 10 6 0.2153 -2.3768 -1.2192 11 6 0.4746 -3.4105 -2.3197 12 6 0.7733 -4.7678 -1.6789 13 6 2.0300 -4.6592 -0.8123 14 6 1.7883 -3.6396 0.3052 15 1 1.0121 -4.0092 0.9753 16 6 3.0833 -3.4228 1.0906 17 7 2.8489 -2.4486 2.1594 18 6 3.8549 -2.0998 2.9858 19 8 4.9540 -2.5928 2.8450 20 6 3.6136 -1.0981 4.0856 21 1 3.2652 -0.1557 3.6630 22 6 4.9089 -0.8701 4.8843 23 6 4.6096 -1.2893 6.3384 24 6 3.0719 -1.1550 6.4668 25 9 2.5866 -1.9732 7.4926 26 9 2.7068 0.1787 6.6798 27 6 2.5719 -1.6477 5.0818 28 1 -0.4850 0.8401 0.0004 29 1 0.0999 -1.3891 -1.6656 30 1 -0.6911 -2.6422 -0.6749 31 1 1.3281 -3.0960 -2.9204 32 1 -0.4066 -3.4945 -2.9556 33 1 0.9341 -5.5107 -2.4602 34 1 -0.0705 -5.0701 -1.0587 35 1 2.8689 -4.3329 -1.4272 36 1 2.2561 -5.6316 -0.3749 37 1 3.8564 -3.0476 0.4201 38 1 3.4071 -4.3684 1.5255 39 1 1.9697 -2.0546 2.2723 40 1 5.1887 0.1829 4.8493 41 1 5.7126 -1.4833 4.4767 42 1 4.9179 -2.3207 6.5092 43 1 5.1107 -0.6214 7.0389 44 1 1.5846 -1.2397 4.8653 45 1 2.5493 -2.7370 5.0480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024474079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:11 Heat of formation + Delta-G solvation = -148.212856 kcal Electronic energy + Delta-G solvation = -28284.179838 eV Core-core repulsion = 24164.322259 eV Total energy + Delta-G solvation = -4119.857579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.88614 -48.06818 -41.10639 -39.45953 -37.50527 -35.70138 -34.88339 -32.49323 -31.68939 -30.34585 -29.20622 -27.58603 -26.35620 -23.84979 -23.18518 -22.30956 -22.04842 -20.88670 -20.49777 -19.02577 -18.33815 -17.91298 -17.66019 -17.27050 -16.88733 -16.57835 -16.25452 -15.89513 -15.57927 -15.15423 -15.01037 -14.93035 -14.79364 -14.51871 -14.40342 -14.10339 -14.00479 -13.63633 -13.50418 -13.34672 -13.17764 -12.85041 -12.77107 -12.58190 -12.44289 -12.40978 -12.26566 -12.01574 -11.79159 -11.72533 -11.65177 -11.52787 -11.14040 -11.08085 -10.71287 -10.51127 -9.82272 -8.55027 -7.81930 -5.28163 1.40034 1.48075 1.53331 1.67656 2.34301 2.50163 2.68042 2.80823 3.14549 3.33493 3.41578 3.60006 3.89236 3.99026 4.02208 4.12051 4.22675 4.24412 4.27191 4.30857 4.38550 4.45132 4.56896 4.62915 4.66893 4.77185 4.86203 4.88231 4.91325 5.01044 5.10375 5.15400 5.18128 5.22868 5.28930 5.39410 5.47456 5.64460 5.65796 5.77142 5.84581 6.45354 6.72738 7.20532 7.34016 7.90078 8.43724 9.22611 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.004619 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.603411 B = 6060.843524 C = 7012.874449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.034 4.034 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.288 1.288 7 C -0.234 4.234 8 H 0.064 0.936 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.103 4.103 13 C -0.122 4.122 14 C 0.159 3.841 15 H 0.033 0.967 16 C 0.139 3.861 17 N -0.693 5.693 18 C 0.516 3.484 19 O -0.584 6.584 20 C -0.111 4.111 21 H 0.104 0.896 22 C -0.113 4.113 23 C -0.145 4.145 24 C 0.274 3.726 25 F -0.201 7.201 26 F -0.200 7.200 27 C -0.143 4.143 28 H 0.247 0.753 29 H 0.048 0.952 30 H 0.001 0.999 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.412 0.588 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -6.518 7.931 11.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.230 4.230 3 Si 0.765 3.235 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.215 1.215 7 C -0.364 4.364 8 H 0.081 0.919 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.162 4.162 14 C 0.053 3.947 15 H 0.051 0.949 16 C 0.015 3.985 17 N -0.342 5.342 18 C 0.302 3.698 19 O -0.466 6.466 20 C -0.133 4.133 21 H 0.123 0.877 22 C -0.151 4.151 23 C -0.182 4.182 24 C 0.238 3.762 25 F -0.182 7.182 26 F -0.181 7.181 27 C -0.181 4.181 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.019 0.981 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.248 0.752 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.313 -6.729 7.852 11.626 hybrid contribution -0.507 1.669 -0.179 1.754 sum 4.806 -5.060 7.674 10.372 Atomic orbital electron populations 1.70121 1.06006 1.25223 1.55650 1.25489 0.95591 0.99992 1.01927 0.85706 0.78653 0.82252 0.76912 1.20240 1.22568 1.21471 1.19252 0.91716 0.84846 1.40598 0.91875 1.44257 1.35816 1.02631 1.49807 1.20574 0.87990 0.96925 0.89256 1.22054 1.00407 0.96707 0.98322 1.21344 0.97440 0.96376 0.98866 1.21895 0.98147 0.98752 0.97368 1.20893 0.93223 0.87476 0.93117 0.94937 1.21257 0.97360 0.91460 0.88465 1.46056 1.14061 1.43615 1.30481 1.20566 0.83965 0.82362 0.82897 1.90594 1.24946 1.56995 1.74025 1.21830 0.98096 0.98844 0.94523 0.87742 1.22112 0.96587 1.03697 0.92689 1.23287 0.90231 1.06051 0.98660 1.22203 0.95893 0.72782 0.85347 1.92981 1.90146 1.72481 1.62571 1.92998 1.93356 1.36084 1.95681 1.23271 1.00183 1.03888 0.90806 0.94345 0.93373 0.98111 0.93644 0.91859 0.90833 0.92444 0.92851 0.89946 0.93709 0.90726 0.75162 0.89403 0.88820 0.87258 0.87203 0.88141 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.97 11.24 21.65 0.24 -49.72 16 2 C -0.03 -1.71 4.96 84.86 0.42 -1.29 16 3 Si 0.93 42.69 29.58 68.60 2.03 44.72 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.23 -11.31 7.01 84.04 0.59 -10.72 16 8 H 0.06 3.14 5.84 -2.91 -0.02 3.13 16 9 N -0.60 -26.39 2.98 -675.12 -2.01 -28.41 16 10 C 0.18 7.86 5.27 86.36 0.45 8.32 16 11 C -0.14 -4.71 6.08 30.68 0.19 -4.53 16 12 C -0.10 -2.95 5.88 30.62 0.18 -2.77 16 13 C -0.12 -3.62 5.37 30.67 0.16 -3.46 16 14 C 0.16 5.67 3.00 44.98 0.13 5.80 16 15 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 16 C 0.14 4.83 4.43 86.38 0.38 5.22 16 17 N -0.69 -24.35 3.80 -463.06 -1.76 -26.11 16 18 C 0.52 17.45 6.99 87.66 0.61 18.07 16 19 O -0.58 -22.53 15.21 -3.02 -0.05 -22.58 16 20 C -0.11 -3.08 3.30 -10.82 -0.04 -3.12 16 21 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 22 C -0.11 -2.65 6.40 31.32 0.20 -2.45 16 23 C -0.14 -2.81 6.42 31.67 0.20 -2.61 16 24 C 0.27 6.43 2.52 32.02 0.08 6.51 16 25 F -0.20 -5.00 17.22 44.97 0.77 -4.23 16 26 F -0.20 -5.31 17.22 44.97 0.77 -4.54 16 27 C -0.14 -3.48 5.94 31.80 0.19 -3.29 16 28 H 0.25 13.24 8.31 -92.70 -0.77 12.47 16 29 H 0.05 2.46 6.20 -2.39 -0.01 2.45 16 30 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.04 1.76 7.40 -2.39 -0.02 1.74 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.41 15.29 7.43 -92.70 -0.69 14.61 16 40 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.09 2.47 6.40 -2.39 -0.02 2.45 16 42 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.11 2.48 7.85 -2.39 -0.02 2.46 16 Total: -1.00 -58.52 355.55 4.07 -54.45 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.31 Total: 26.74 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 3.76 Total: 9.68 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -3.53 Total: -104.24 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 9 Polarization: -10.31 SS G_CDS: 1.55 Total: -8.77 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -58.52 4.07 -54.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024474079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.763 kcal (2) G-P(sol) polarization free energy of solvation -58.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds