Wall clock time and date at job start Tue Mar 31 2020 11:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48494 * 109.46850 * 264.71582 * 3 2 1 5 5 H 1.48497 * 109.46999 * 24.72188 * 3 2 1 6 6 H 1.48506 * 109.46930 * 144.72081 * 3 2 1 7 7 C 1.38813 * 119.99374 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00367 * 35.15778 * 7 2 1 9 9 N 1.36935 * 119.99580 * 215.14989 * 7 2 1 10 10 C 1.46930 * 120.63224 * 38.32537 * 9 7 2 11 11 C 1.53193 * 108.89319 * 126.33575 * 10 9 7 12 12 C 1.53354 * 109.14914 * 54.58282 * 11 10 9 13 13 C 1.53046 * 109.60383 * 298.70888 * 12 11 10 14 14 C 1.46925 * 120.63333 * 218.34061 * 9 7 2 15 15 H 1.08998 * 109.58745 * 113.80372 * 14 9 7 16 16 C 1.53005 * 109.58698 * 353.52304 * 14 9 7 17 17 N 1.46498 * 109.46898 * 59.16793 * 16 14 9 18 18 C 1.34783 * 119.99972 * 180.02562 * 17 16 14 19 19 O 1.21278 * 119.99893 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99961 * 180.02562 * 18 17 16 21 21 H 1.09000 * 110.01613 * 59.29404 * 20 18 17 22 22 C 1.53874 * 110.02989 * 180.68754 * 20 18 17 23 23 C 1.54265 * 106.60010 * 119.28497 * 22 20 18 24 24 C 1.54898 * 104.19406 * 23.60822 * 23 22 20 25 25 F 1.39893 * 110.75530 * 80.37425 * 24 23 22 26 26 F 1.39905 * 110.75275 * 203.56179 * 24 23 22 27 27 C 1.54266 * 110.03115 * 297.90490 * 20 18 17 28 28 H 0.97003 * 119.99489 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.58942 * 246.19569 * 10 9 7 30 30 H 1.09001 * 109.58587 * 6.48223 * 10 9 7 31 31 H 1.09002 * 109.49747 * 174.65655 * 11 10 9 32 32 H 1.08994 * 109.50257 * 294.75592 * 11 10 9 33 33 H 1.09001 * 109.41877 * 178.67715 * 12 11 10 34 34 H 1.08994 * 109.42437 * 58.74443 * 12 11 10 35 35 H 1.08998 * 109.49866 * 301.42137 * 13 12 11 36 36 H 1.09002 * 109.49610 * 181.32455 * 13 12 11 37 37 H 1.08991 * 109.47409 * 179.17013 * 16 14 9 38 38 H 1.08997 * 109.46943 * 299.17153 * 16 14 9 39 39 H 0.97005 * 120.00243 * 0.02562 * 17 16 14 40 40 H 1.08998 * 110.03249 * 238.56626 * 22 20 18 41 41 H 1.08994 * 110.03083 * 359.97438 * 22 20 18 42 42 H 1.08997 * 110.49029 * 142.28451 * 23 22 20 43 43 H 1.09000 * 110.48594 * 264.92994 * 23 22 20 44 44 H 1.09000 * 110.48869 * 335.78237 * 27 20 18 45 45 H 1.08993 * 110.48645 * 98.42592 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6094 1.9818 -1.3941 5 1 1.3964 2.6823 0.5855 6 1 3.4876 1.4748 0.8087 7 6 2.0101 -1.2022 0.0005 8 1 1.6179 -2.0524 -0.5376 9 7 3.1922 -1.3101 0.6834 10 6 3.3692 -0.6477 1.9828 11 6 3.8297 -1.6863 3.0104 12 6 5.0860 -2.3914 2.4847 13 6 4.7593 -3.1145 1.1760 14 6 4.3077 -2.0901 0.1304 15 1 5.1360 -1.4236 -0.1097 16 6 3.8486 -2.8146 -1.1367 17 7 3.3851 -1.8325 -2.1199 18 6 2.9304 -2.2436 -3.3203 19 8 2.9055 -3.4265 -3.5866 20 6 2.4542 -1.2332 -4.3320 21 1 3.2599 -0.5406 -4.5753 22 6 1.9723 -1.9496 -5.6057 23 6 0.4830 -1.5865 -5.7789 24 6 0.3251 -0.2526 -5.0074 25 9 0.7713 0.8237 -5.7816 26 9 -1.0041 -0.0613 -4.6149 27 6 1.2418 -0.4589 -3.7750 28 1 -0.4849 0.8401 -0.0004 29 1 4.1210 0.1365 1.8939 30 1 2.4227 -0.2119 2.3028 31 1 4.0553 -1.1894 3.9540 32 1 3.0390 -2.4203 3.1653 33 1 5.4311 -3.1152 3.2231 34 1 5.8680 -1.6534 2.3064 35 1 3.9600 -3.8352 1.3483 36 1 5.6473 -3.6344 0.8162 37 1 4.6814 -3.3808 -1.5535 38 1 3.0334 -3.4951 -0.8909 39 1 3.4054 -0.8863 -1.9071 40 1 2.5434 -1.6040 -6.4673 41 1 2.0833 -3.0280 -5.4922 42 1 0.2442 -1.4479 -6.8333 43 1 -0.1510 -2.3577 -5.3413 44 1 0.7302 -1.0475 -3.0135 45 1 1.5570 0.5018 -3.3680 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024474081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:20 Heat of formation + Delta-G solvation = -128.740668 kcal Electronic energy + Delta-G solvation = -28810.128454 eV Core-core repulsion = 24691.115252 eV Total energy + Delta-G solvation = -4119.013202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.59005 -46.74527 -39.69054 -38.10456 -36.22666 -34.28403 -33.06469 -31.11924 -30.72669 -29.12361 -27.94702 -26.09718 -24.64096 -22.49652 -21.85290 -21.05573 -20.65580 -19.65379 -19.07880 -17.65109 -16.84431 -16.57572 -16.15826 -15.80334 -15.43434 -15.17560 -14.81817 -14.77623 -13.92572 -13.77041 -13.66638 -13.54473 -13.48450 -13.18282 -13.07628 -12.82287 -12.55908 -12.27638 -12.24989 -11.96493 -11.80547 -11.62984 -11.44288 -11.22244 -11.19947 -10.83222 -10.65469 -10.59178 -10.53196 -10.39187 -10.23110 -9.91674 -9.73229 -9.59977 -9.26403 -8.54724 -8.28449 -6.85867 -6.18502 -3.46977 3.10525 3.24369 3.40106 3.43000 3.72517 3.94547 4.06195 4.41349 4.44455 4.63921 4.76989 5.13346 5.14272 5.23846 5.31034 5.32889 5.42760 5.44230 5.46596 5.50001 5.58823 5.77240 5.78030 5.88833 5.97271 6.01690 6.14453 6.14945 6.19875 6.23866 6.30701 6.37647 6.42358 6.44159 6.48977 6.59334 6.77071 6.83708 7.01615 7.12572 7.89023 8.18520 8.30155 8.79660 8.86562 9.59591 10.08066 10.95336 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.005376 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.876127 B = 5207.045159 C = 6394.335907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.055 3.945 3 Si 0.819 3.181 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.257 1.257 7 C -0.278 4.278 8 H 0.081 0.919 9 N -0.596 5.596 10 C 0.144 3.856 11 C -0.138 4.138 12 C -0.108 4.108 13 C -0.126 4.126 14 C 0.156 3.844 15 H 0.033 0.967 16 C 0.136 3.864 17 N -0.689 5.689 18 C 0.518 3.482 19 O -0.559 6.559 20 C -0.111 4.111 21 H 0.101 0.899 22 C -0.114 4.114 23 C -0.154 4.154 24 C 0.275 3.725 25 F -0.198 7.198 26 F -0.193 7.193 27 C -0.145 4.145 28 H 0.265 0.735 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.410 0.590 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.804 -1.923 -5.341 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.149 4.149 3 Si 0.645 3.355 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.182 1.182 7 C -0.405 4.405 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.019 3.981 11 C -0.177 4.177 12 C -0.146 4.146 13 C -0.166 4.166 14 C 0.050 3.950 15 H 0.051 0.949 16 C 0.012 3.988 17 N -0.338 5.338 18 C 0.303 3.697 19 O -0.439 6.439 20 C -0.132 4.132 21 H 0.119 0.881 22 C -0.151 4.151 23 C -0.192 4.192 24 C 0.239 3.761 25 F -0.179 7.179 26 F -0.174 7.174 27 C -0.183 4.183 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.137 0.863 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.581 -2.639 -5.522 8.987 hybrid contribution 0.239 1.911 0.201 1.936 sum 6.820 -0.728 -5.322 8.681 Atomic orbital electron populations 1.70085 1.06194 1.27086 1.47189 1.25466 0.94615 0.97052 0.97733 0.87777 0.82160 0.86851 0.78678 1.21288 1.22167 1.18205 1.18659 0.95497 0.95850 1.30543 0.90204 1.44335 1.11568 1.59105 1.17104 1.21306 0.99161 0.92761 0.84906 1.22106 0.97467 0.99890 0.98259 1.21414 0.97746 0.98781 0.96625 1.21905 1.00300 0.98424 0.95981 1.20836 0.90868 0.92328 0.90961 0.94947 1.21246 0.98527 0.91314 0.87671 1.45931 1.62754 1.11669 1.13458 1.20133 0.77515 0.89191 0.82872 1.90603 1.56707 1.17726 1.78893 1.21801 0.98787 0.97291 0.95356 0.88117 1.22104 0.93481 1.03717 0.95820 1.23292 0.99479 0.95011 1.01450 1.22073 0.77915 0.85002 0.91091 1.92969 1.89128 1.58961 1.76834 1.93013 1.36738 1.96019 1.91618 1.23287 0.95117 1.03536 0.96401 0.92549 0.95826 0.91632 0.93201 0.91985 0.93247 0.92882 0.91681 0.92747 0.92556 0.91257 0.75324 0.90747 0.87808 0.89382 0.88209 0.86307 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.68 13.97 55.49 0.78 -22.91 16 2 C 0.05 1.37 4.80 -17.43 -0.08 1.29 16 3 Si 0.82 18.85 27.24 -169.99 -4.63 14.22 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -5.71 5.10 56.52 0.29 -5.42 16 7 C -0.28 -6.59 6.78 -15.06 -0.10 -6.70 16 8 H 0.08 2.12 6.47 -52.49 -0.34 1.78 16 9 N -0.60 -12.30 2.51 -164.78 -0.41 -12.71 16 10 C 0.14 2.85 4.52 -3.71 -0.02 2.83 16 11 C -0.14 -2.27 6.11 -26.45 -0.16 -2.43 16 12 C -0.11 -1.57 5.89 -26.52 -0.16 -1.72 16 13 C -0.13 -1.92 5.38 -26.61 -0.14 -2.06 16 14 C 0.16 2.73 3.02 -67.60 -0.20 2.52 16 15 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 16 C 0.14 2.40 4.46 -4.04 -0.02 2.39 16 17 N -0.69 -12.40 3.87 -60.30 -0.23 -12.63 16 18 C 0.52 9.20 7.00 -10.98 -0.08 9.13 16 19 O -0.56 -11.22 15.21 5.56 0.08 -11.14 16 20 C -0.11 -1.67 3.29 -90.65 -0.30 -1.97 16 21 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 22 C -0.11 -1.50 6.40 -25.61 -0.16 -1.66 16 23 C -0.15 -2.02 6.43 -25.07 -0.16 -2.18 16 24 C 0.28 4.38 2.50 -24.69 -0.06 4.32 16 25 F -0.20 -3.17 17.21 2.25 0.04 -3.13 16 26 F -0.19 -3.48 17.22 2.25 0.04 -3.44 16 27 C -0.15 -2.47 5.90 -25.03 -0.15 -2.62 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.02 0.47 6.65 -51.93 -0.35 0.13 16 30 H 0.07 1.43 6.77 -51.93 -0.35 1.08 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.38 7.46 -51.93 -0.39 0.99 16 39 H 0.41 7.62 7.29 -40.82 -0.30 7.32 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.49 6.39 -51.93 -0.33 1.16 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.12 2.36 7.85 -51.93 -0.41 1.95 16 45 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -27.42 352.06 -8.04 -35.45 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -7.21 Total: 9.84 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.80 Total: 1.14 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.13 Total: -48.25 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.08 Total: -6.57 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.63 Total: 14.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.42 -8.04 -35.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024474081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.286 kcal (2) G-P(sol) polarization free energy of solvation -27.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds