Wall clock time and date at job start Tue Mar 31 2020 11:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48492 * 109.46929 * 269.99130 * 3 2 1 5 5 H 1.48493 * 109.47311 * 29.99631 * 3 2 1 6 6 H 1.48503 * 109.46832 * 149.99487 * 3 2 1 7 7 C 1.38811 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99438 * 167.95534 * 7 2 1 9 9 N 1.36932 * 120.00221 * 347.95885 * 7 2 1 10 10 C 1.46926 * 120.63306 * 328.03263 * 9 7 2 11 11 C 1.53189 * 108.77367 * 233.88230 * 10 9 7 12 12 C 1.53038 * 109.31613 * 305.36171 * 11 10 9 13 13 C 1.53048 * 109.53513 * 61.36502 * 12 11 10 14 14 C 1.46933 * 120.62749 * 148.31295 * 9 7 2 15 15 H 1.09004 * 109.58093 * 246.04737 * 14 9 7 16 16 C 1.52998 * 109.58807 * 6.32840 * 14 9 7 17 17 N 1.46506 * 109.46873 * 299.87475 * 16 14 9 18 18 C 1.34778 * 119.99405 * 179.97438 * 17 16 14 19 19 O 1.21281 * 120.00209 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.99533 * 179.97438 * 18 17 16 21 21 H 1.09005 * 110.01775 * 59.30604 * 20 18 17 22 22 C 1.54264 * 110.03499 * 297.90756 * 20 18 17 23 23 C 1.54964 * 104.16197 * 217.13378 * 22 20 18 24 24 C 1.54892 * 102.77619 * 37.89067 * 23 22 20 25 25 F 1.39899 * 110.49039 * 203.40107 * 24 23 22 26 26 F 1.39908 * 110.59844 * 80.81408 * 24 23 22 27 27 C 1.53876 * 110.03225 * 180.69007 * 20 18 17 28 28 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.58482 * 353.66705 * 10 9 7 30 30 H 1.08995 * 109.58548 * 114.09283 * 10 9 7 31 31 H 1.09003 * 109.49623 * 185.41364 * 11 10 9 32 32 H 1.09000 * 109.49872 * 65.31948 * 11 10 9 33 33 H 1.08999 * 109.46312 * 301.34616 * 12 11 10 34 34 H 1.09003 * 109.46374 * 181.38585 * 12 11 10 35 35 H 1.08995 * 109.49633 * 178.68416 * 13 12 11 36 36 H 1.09003 * 109.49431 * 58.58758 * 13 12 11 37 37 H 1.08998 * 109.47267 * 59.87282 * 16 14 9 38 38 H 1.08996 * 109.47073 * 179.87843 * 16 14 9 39 39 H 0.97002 * 120.00271 * 359.97438 * 17 16 14 40 40 H 1.08994 * 110.48656 * 335.78830 * 22 20 18 41 41 H 1.09001 * 110.48276 * 98.43041 * 22 20 18 42 42 H 1.08996 * 110.72341 * 279.57578 * 23 22 20 43 43 H 1.09001 * 110.92377 * 156.29216 * 23 22 20 44 44 H 1.09003 * 110.03570 * 238.57063 * 27 20 18 45 45 H 1.09004 * 110.03066 * 0.02562 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0725 -1.2125 -0.1946 9 7 1.3482 -2.3749 0.2484 10 6 0.1886 -2.4037 1.1502 11 6 0.4295 -3.4639 2.2294 12 6 0.7395 -4.8053 1.5611 13 6 2.0107 -4.6758 0.7188 14 6 1.7878 -3.6294 -0.3775 15 1 1.0224 -3.9799 -1.0700 16 6 3.0959 -3.3937 -1.1353 17 7 2.8832 -2.3826 -2.1739 18 6 3.9039 -2.0113 -2.9719 19 8 4.9983 -2.5145 -2.8304 20 6 3.6850 -0.9716 -4.0406 21 1 3.3465 -0.0386 -3.5898 22 6 2.6431 -1.4741 -5.0612 23 6 3.1605 -0.9453 -6.4228 24 6 4.6956 -1.1045 -6.2912 25 9 5.3552 -0.2262 -7.1575 26 9 5.0775 -2.4252 -6.5507 27 6 4.9895 -0.7363 -4.8222 28 1 -0.4850 0.8400 -0.0004 29 1 0.0654 -1.4272 1.6183 30 1 -0.7082 -2.6557 0.5842 31 1 -0.4628 -3.5630 2.8476 32 1 1.2725 -3.1642 2.8520 33 1 -0.0936 -5.0924 0.9194 34 1 0.8871 -5.5670 2.3267 35 1 2.2439 -5.6375 0.2619 36 1 2.8389 -4.3647 1.3556 37 1 3.8605 -3.0459 -0.4407 38 1 3.4213 -4.3259 -1.5970 39 1 2.0078 -1.9804 -2.2872 40 1 2.6064 -2.5634 -5.0641 41 1 1.6601 -1.0589 -4.8386 42 1 2.8910 0.1022 -6.5575 43 1 2.7787 -1.5497 -7.2457 44 1 5.2835 0.3109 -4.7514 45 1 5.7807 -1.3745 -4.4287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024474082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:24 Heat of formation + Delta-G solvation = -134.968707 kcal Electronic energy + Delta-G solvation = -28287.210119 eV Core-core repulsion = 24167.926849 eV Total energy + Delta-G solvation = -4119.283270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.83044 -46.95631 -39.70348 -37.94514 -36.37328 -34.22450 -33.12003 -30.92360 -29.97061 -29.31814 -28.16383 -25.92843 -24.69788 -22.25758 -21.93616 -21.23566 -20.64042 -19.48966 -19.05375 -17.75263 -17.19016 -16.64521 -16.22868 -15.78199 -15.57718 -15.34610 -14.57569 -14.15019 -14.07758 -13.99067 -13.78195 -13.53662 -13.44205 -13.27535 -13.11893 -12.89491 -12.47762 -12.28120 -12.02448 -11.94212 -11.74489 -11.64819 -11.42717 -11.19847 -11.04597 -10.86905 -10.80784 -10.61673 -10.55402 -10.33995 -10.19680 -10.03969 -9.59905 -9.48532 -9.24067 -8.64910 -8.27195 -6.70429 -5.90491 -3.38158 3.10128 3.23819 3.34682 3.38422 3.61739 3.76690 3.99418 4.11330 4.35900 4.46026 4.96579 5.10542 5.15081 5.17530 5.20986 5.26236 5.28714 5.47418 5.52284 5.59831 5.64090 5.67850 5.80271 5.90855 5.93435 6.02157 6.02544 6.11791 6.15808 6.28100 6.33094 6.38057 6.56292 6.67179 6.69935 6.82248 6.94213 7.13937 7.34067 7.60976 7.72195 8.20424 8.35153 8.80215 9.10101 9.71285 10.30121 11.16166 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.004472 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.609878 B = 6259.528784 C = 7412.236463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.008 3.992 3 Si 0.892 3.108 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.161 3.839 15 H 0.032 0.968 16 C 0.134 3.866 17 N -0.689 5.689 18 C 0.513 3.487 19 O -0.560 6.560 20 C -0.112 4.112 21 H 0.112 0.888 22 C -0.113 4.113 23 C -0.156 4.156 24 C 0.277 3.723 25 F -0.201 7.201 26 F -0.193 7.193 27 C -0.155 4.155 28 H 0.254 0.746 29 H 0.085 0.915 30 H 0.018 0.982 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.416 0.584 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 -3.611 -7.541 8.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.722 3.278 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.339 5.339 18 C 0.299 3.701 19 O -0.441 6.441 20 C -0.134 4.134 21 H 0.130 0.870 22 C -0.151 4.151 23 C -0.194 4.194 24 C 0.241 3.759 25 F -0.182 7.182 26 F -0.174 7.174 27 C -0.194 4.194 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.254 0.746 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.533 -3.831 -7.450 8.752 hybrid contribution 0.088 1.156 -0.001 1.160 sum 2.621 -2.675 -7.450 8.339 Atomic orbital electron populations 1.69987 1.05117 1.25503 1.53740 1.25098 0.95212 0.98038 1.00766 0.86463 0.79410 0.84089 0.77881 1.21268 1.21558 1.20488 1.19186 0.91491 0.83773 1.43528 0.91345 1.44063 1.34364 1.02604 1.50215 1.20763 0.88260 0.97224 0.88942 1.22203 0.99897 0.96706 0.99596 1.21361 0.97474 0.97385 0.98274 1.21941 0.98127 0.98195 0.98466 1.20732 0.93102 0.88573 0.92237 0.95039 1.21300 0.98279 0.90067 0.89386 1.45951 1.13764 1.41402 1.32750 1.20160 0.84616 0.82986 0.82381 1.90619 1.24849 1.56753 1.71831 1.21816 0.95751 1.00246 0.95563 0.86952 1.22343 0.99010 1.02007 0.91720 1.23460 0.91313 1.04603 0.99985 1.21961 0.91973 0.72568 0.89372 1.92982 1.83487 1.69011 1.72743 1.93016 1.92664 1.36589 1.95127 1.23116 1.00270 1.05186 0.90792 0.93574 0.89684 0.96378 0.93550 0.92861 0.92886 0.93731 0.93044 0.92103 0.91610 0.92674 0.74635 0.90098 0.88803 0.88037 0.88945 0.88405 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.37 11.17 55.49 0.62 -22.75 16 2 C 0.01 0.20 5.01 -17.43 -0.09 0.11 16 3 Si 0.89 20.10 29.57 -169.99 -5.03 15.07 16 4 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.25 -5.96 6.94 -15.06 -0.10 -6.06 16 8 H 0.07 1.69 5.89 -52.49 -0.31 1.38 16 9 N -0.59 -12.89 2.97 -164.78 -0.49 -13.38 16 10 C 0.17 3.78 5.26 -3.71 -0.02 3.76 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.11 -1.71 5.88 -26.69 -0.16 -1.87 16 13 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 14 C 0.16 2.97 3.01 -67.60 -0.20 2.77 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C 0.13 2.43 4.43 -4.04 -0.02 2.41 16 17 N -0.69 -12.34 3.80 -60.29 -0.23 -12.57 16 18 C 0.51 9.09 7.00 -10.98 -0.08 9.01 16 19 O -0.56 -11.53 15.21 5.56 0.08 -11.45 16 20 C -0.11 -1.60 3.29 -90.65 -0.30 -1.89 16 21 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 22 C -0.11 -1.32 6.30 -25.03 -0.16 -1.48 16 23 C -0.16 -1.63 6.49 -24.70 -0.16 -1.79 16 24 C 0.28 3.63 2.49 -25.07 -0.06 3.57 16 25 F -0.20 -2.72 17.16 2.25 0.04 -2.69 16 26 F -0.19 -2.91 17.17 2.25 0.04 -2.87 16 27 C -0.16 -2.13 6.01 -25.61 -0.15 -2.28 16 28 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.08 2.11 6.18 -51.93 -0.32 1.79 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.32 7.41 -51.93 -0.38 0.94 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.42 7.68 7.38 -40.82 -0.30 7.37 16 40 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 1.18 8.11 -51.93 -0.42 0.75 16 45 H 0.12 1.84 6.37 -51.93 -0.33 1.51 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -27.43 355.29 -8.52 -35.95 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.11 Total: 8.06 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.80 Total: 1.26 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.10 Total: -48.70 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.08 Total: -5.55 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.43 -8.52 -35.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024474082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.019 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds