Wall clock time and date at job start Tue Mar 31 2020 11:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48492 * 109.46929 * 269.99130 * 3 2 1 5 5 H 1.48493 * 109.47311 * 29.99631 * 3 2 1 6 6 H 1.48503 * 109.46832 * 149.99487 * 3 2 1 7 7 C 1.38811 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99438 * 167.95534 * 7 2 1 9 9 N 1.36932 * 120.00221 * 347.95885 * 7 2 1 10 10 C 1.46926 * 120.63306 * 328.03263 * 9 7 2 11 11 C 1.53189 * 108.77367 * 233.88230 * 10 9 7 12 12 C 1.53038 * 109.31613 * 305.36171 * 11 10 9 13 13 C 1.53048 * 109.53513 * 61.36502 * 12 11 10 14 14 C 1.46933 * 120.62749 * 148.31295 * 9 7 2 15 15 H 1.09004 * 109.58093 * 246.04737 * 14 9 7 16 16 C 1.52998 * 109.58807 * 6.32840 * 14 9 7 17 17 N 1.46506 * 109.46873 * 299.87475 * 16 14 9 18 18 C 1.34778 * 119.99405 * 179.97438 * 17 16 14 19 19 O 1.21281 * 120.00209 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.99533 * 179.97438 * 18 17 16 21 21 H 1.09005 * 110.01775 * 59.30604 * 20 18 17 22 22 C 1.54264 * 110.03499 * 297.90756 * 20 18 17 23 23 C 1.54964 * 104.16197 * 217.13378 * 22 20 18 24 24 C 1.54892 * 102.77619 * 37.89067 * 23 22 20 25 25 F 1.39899 * 110.49039 * 203.40107 * 24 23 22 26 26 F 1.39908 * 110.59844 * 80.81408 * 24 23 22 27 27 C 1.53876 * 110.03225 * 180.69007 * 20 18 17 28 28 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.58482 * 353.66705 * 10 9 7 30 30 H 1.08995 * 109.58548 * 114.09283 * 10 9 7 31 31 H 1.09003 * 109.49623 * 185.41364 * 11 10 9 32 32 H 1.09000 * 109.49872 * 65.31948 * 11 10 9 33 33 H 1.08999 * 109.46312 * 301.34616 * 12 11 10 34 34 H 1.09003 * 109.46374 * 181.38585 * 12 11 10 35 35 H 1.08995 * 109.49633 * 178.68416 * 13 12 11 36 36 H 1.09003 * 109.49431 * 58.58758 * 13 12 11 37 37 H 1.08998 * 109.47267 * 59.87282 * 16 14 9 38 38 H 1.08996 * 109.47073 * 179.87843 * 16 14 9 39 39 H 0.97002 * 120.00271 * 359.97438 * 17 16 14 40 40 H 1.08994 * 110.48656 * 335.78830 * 22 20 18 41 41 H 1.09001 * 110.48276 * 98.43041 * 22 20 18 42 42 H 1.08996 * 110.72341 * 279.57578 * 23 22 20 43 43 H 1.09001 * 110.92377 * 156.29216 * 23 22 20 44 44 H 1.09003 * 110.03570 * 238.57063 * 27 20 18 45 45 H 1.09004 * 110.03066 * 0.02562 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0725 -1.2125 -0.1946 9 7 1.3482 -2.3749 0.2484 10 6 0.1886 -2.4037 1.1502 11 6 0.4295 -3.4639 2.2294 12 6 0.7395 -4.8053 1.5611 13 6 2.0107 -4.6758 0.7188 14 6 1.7878 -3.6294 -0.3775 15 1 1.0224 -3.9799 -1.0700 16 6 3.0959 -3.3937 -1.1353 17 7 2.8832 -2.3826 -2.1739 18 6 3.9039 -2.0113 -2.9719 19 8 4.9983 -2.5145 -2.8304 20 6 3.6850 -0.9716 -4.0406 21 1 3.3465 -0.0386 -3.5898 22 6 2.6431 -1.4741 -5.0612 23 6 3.1605 -0.9453 -6.4228 24 6 4.6956 -1.1045 -6.2912 25 9 5.3552 -0.2262 -7.1575 26 9 5.0775 -2.4252 -6.5507 27 6 4.9895 -0.7363 -4.8222 28 1 -0.4850 0.8400 -0.0004 29 1 0.0654 -1.4272 1.6183 30 1 -0.7082 -2.6557 0.5842 31 1 -0.4628 -3.5630 2.8476 32 1 1.2725 -3.1642 2.8520 33 1 -0.0936 -5.0924 0.9194 34 1 0.8871 -5.5670 2.3267 35 1 2.2439 -5.6375 0.2619 36 1 2.8389 -4.3647 1.3556 37 1 3.8605 -3.0459 -0.4407 38 1 3.4213 -4.3259 -1.5970 39 1 2.0078 -1.9804 -2.2872 40 1 2.6064 -2.5634 -5.0641 41 1 1.6601 -1.0589 -4.8386 42 1 2.8910 0.1022 -6.5575 43 1 2.7787 -1.5497 -7.2457 44 1 5.2835 0.3109 -4.7514 45 1 5.7807 -1.3745 -4.4287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024474082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:23 Heat of formation + Delta-G solvation = -149.068320 kcal Electronic energy + Delta-G solvation = -28287.821524 eV Core-core repulsion = 24167.926849 eV Total energy + Delta-G solvation = -4119.894675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.89876 -48.03706 -41.09324 -39.45021 -37.54044 -35.70916 -34.86893 -32.42599 -31.66645 -30.34810 -29.29548 -27.52890 -26.27819 -23.82994 -23.19944 -22.28215 -22.06879 -20.90909 -20.51416 -18.90523 -18.50045 -17.97605 -17.64054 -17.18606 -16.92760 -16.70371 -16.09180 -15.78555 -15.44434 -15.09641 -15.08886 -14.85285 -14.83328 -14.51436 -14.37874 -14.22262 -14.02306 -13.64536 -13.43426 -13.21682 -12.91976 -12.79174 -12.78194 -12.66754 -12.54712 -12.42762 -12.29986 -12.02541 -11.91163 -11.78683 -11.58770 -11.52277 -11.12948 -11.07298 -10.69512 -10.48198 -9.81656 -8.51351 -7.79332 -5.27730 1.42130 1.50233 1.55460 1.71350 2.33238 2.52024 2.75225 2.93223 3.08809 3.36124 3.45072 3.60823 3.91133 3.98399 4.02492 4.12635 4.17567 4.23063 4.28097 4.31479 4.44368 4.49686 4.57584 4.66875 4.74314 4.77870 4.86707 4.88755 4.91456 5.01088 5.05598 5.10980 5.15745 5.22918 5.29313 5.39822 5.47722 5.66107 5.66574 5.78208 5.86217 6.48122 6.74919 7.22842 7.36591 7.91371 8.45740 9.24942 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.004472 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.609878 B = 6259.528784 C = 7412.236463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.030 4.030 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.289 1.289 7 C -0.236 4.236 8 H 0.060 0.940 9 N -0.601 5.601 10 C 0.179 3.821 11 C -0.137 4.137 12 C -0.102 4.102 13 C -0.123 4.123 14 C 0.161 3.839 15 H 0.035 0.965 16 C 0.139 3.861 17 N -0.689 5.689 18 C 0.509 3.491 19 O -0.593 6.593 20 C -0.110 4.110 21 H 0.118 0.882 22 C -0.108 4.108 23 C -0.143 4.143 24 C 0.272 3.728 25 F -0.203 7.203 26 F -0.208 7.208 27 C -0.155 4.155 28 H 0.248 0.752 29 H 0.050 0.950 30 H 0.002 0.998 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.414 0.586 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 -4.327 -8.340 9.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.227 4.227 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.226 1.226 6 H -0.215 1.215 7 C -0.367 4.367 8 H 0.077 0.923 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.140 4.140 13 C -0.163 4.163 14 C 0.055 3.945 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.338 5.338 18 C 0.296 3.704 19 O -0.475 6.475 20 C -0.131 4.131 21 H 0.136 0.864 22 C -0.146 4.146 23 C -0.181 4.181 24 C 0.236 3.764 25 F -0.184 7.184 26 F -0.189 7.189 27 C -0.193 4.193 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.021 0.979 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.251 0.749 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.141 0.859 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.153 -4.565 -8.258 9.678 hybrid contribution 0.262 1.331 0.287 1.387 sum 2.414 -3.234 -7.971 8.935 Atomic orbital electron populations 1.70100 1.05975 1.25363 1.55530 1.25503 0.95612 0.99899 1.01639 0.85778 0.77756 0.81720 0.78248 1.19745 1.22604 1.21523 1.19177 0.91048 0.84627 1.41837 0.92277 1.44233 1.34167 1.03284 1.50849 1.20571 0.87783 0.96736 0.89589 1.22069 1.00334 0.96757 0.98432 1.21341 0.97277 0.96517 0.98848 1.21902 0.98126 0.98602 0.97636 1.20871 0.92976 0.87687 0.92985 0.94716 1.21235 0.97458 0.90698 0.89174 1.45970 1.13746 1.41376 1.32699 1.20768 0.83842 0.83122 0.82632 1.90603 1.26018 1.58109 1.72819 1.21848 0.96943 0.99189 0.95138 0.86401 1.22352 0.98914 1.01734 0.91613 1.23482 0.88684 1.06302 0.99625 1.22187 0.93673 0.71806 0.88754 1.92976 1.83788 1.68977 1.72701 1.92988 1.92983 1.37729 1.95166 1.23090 0.99262 1.05667 0.91313 0.94230 0.93177 0.97940 0.91828 0.93809 0.92315 0.90946 0.90122 0.93039 0.93934 0.91180 0.74855 0.90730 0.87248 0.85854 0.87173 0.86751 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.67 11.17 21.65 0.24 -48.43 16 2 C -0.03 -1.50 5.01 84.86 0.43 -1.07 16 3 Si 0.94 41.42 29.57 68.60 2.03 43.45 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.24 -11.32 6.94 84.03 0.58 -10.74 16 8 H 0.06 2.94 5.89 -2.91 -0.02 2.92 16 9 N -0.60 -26.25 2.97 -675.25 -2.00 -28.25 16 10 C 0.18 7.81 5.26 86.36 0.45 8.27 16 11 C -0.14 -4.75 6.08 30.67 0.19 -4.56 16 12 C -0.10 -2.96 5.88 30.62 0.18 -2.78 16 13 C -0.12 -3.73 5.37 30.67 0.16 -3.56 16 14 C 0.16 5.77 3.01 44.97 0.14 5.91 16 15 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 16 C 0.14 4.97 4.43 86.38 0.38 5.35 16 17 N -0.69 -24.45 3.80 -463.05 -1.76 -26.21 16 18 C 0.51 17.92 7.00 87.66 0.61 18.54 16 19 O -0.59 -24.68 15.21 -3.03 -0.05 -24.72 16 20 C -0.11 -2.99 3.29 -10.82 -0.04 -3.03 16 21 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 22 C -0.11 -2.31 6.30 31.69 0.20 -2.11 16 23 C -0.14 -2.59 6.49 31.91 0.21 -2.39 16 24 C 0.27 6.69 2.49 31.67 0.08 6.76 16 25 F -0.20 -5.15 17.16 44.97 0.77 -4.38 16 26 F -0.21 -6.09 17.17 44.97 0.77 -5.31 16 27 C -0.16 -4.11 6.01 31.32 0.19 -3.92 16 28 H 0.25 12.94 8.31 -92.71 -0.77 12.17 16 29 H 0.05 2.54 6.18 -2.39 -0.01 2.52 16 30 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.72 7.41 -2.39 -0.02 1.71 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.41 15.09 7.38 -92.71 -0.68 14.40 16 40 H 0.07 1.70 7.85 -2.39 -0.02 1.68 16 41 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.11 2.59 8.11 -2.39 -0.02 2.57 16 45 H 0.09 2.92 6.37 -2.38 -0.02 2.91 16 Total: -1.00 -59.75 355.29 4.08 -55.67 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.31 Total: 27.51 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 3.76 Total: 10.66 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -3.52 Total: -102.89 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 9 Polarization: -11.24 SS G_CDS: 1.54 Total: -9.69 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -59.75 4.08 -55.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024474082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.396 kcal (2) G-P(sol) polarization free energy of solvation -59.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds