Wall clock time and date at job start Tue Mar 31 2020 12:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 F 1.39907 * 109.46802 * 2 1 4 4 F 1.39900 * 109.47459 * 240.00050 * 2 1 3 5 5 C 1.50703 * 109.47267 * 119.99761 * 2 1 3 6 6 O 1.21284 * 119.99928 * 346.49095 * 5 2 1 7 7 N 1.34774 * 119.99798 * 166.49297 * 5 2 1 8 8 C 1.46921 * 120.63542 * 351.48905 * 7 5 2 9 9 C 1.53196 * 108.77768 * 126.43400 * 8 7 5 10 10 C 1.53039 * 109.30982 * 54.63840 * 9 8 7 11 11 C 1.53043 * 109.53735 * 298.63261 * 10 9 8 12 12 C 1.46939 * 120.60332 * 171.51350 * 7 5 2 13 13 H 1.08993 * 109.56292 * 113.76239 * 12 7 5 14 14 C 1.53001 * 109.61337 * 353.33379 * 12 7 5 15 15 H 1.08997 * 109.87668 * 323.86125 * 14 12 7 16 16 C 1.54323 * 109.88162 * 85.04010 * 14 12 7 17 17 C 1.55165 * 102.94103 * 141.60849 * 16 14 12 18 18 C 1.54905 * 101.57911 * 324.49943 * 17 16 14 19 19 N 1.47023 * 109.88189 * 202.84622 * 14 12 7 20 20 C 1.36943 * 125.64867 * 61.68223 * 19 14 12 21 21 H 1.08001 * 119.99619 * 326.15468 * 20 19 14 22 22 C 1.38811 * 120.00263 * 146.15614 * 20 19 14 23 23 N 1.31618 * 119.99909 * 171.24620 * 22 20 19 24 24 Si 1.86791 * 119.99826 * 351.25131 * 22 20 19 25 25 H 1.48503 * 109.47532 * 87.98967 * 24 22 20 26 26 H 1.48507 * 109.46863 * 207.98885 * 24 22 20 27 27 H 1.48502 * 109.47596 * 327.98502 * 24 22 20 28 28 H 1.08999 * 109.47771 * 299.99784 * 1 2 3 29 29 H 1.08998 * 109.47595 * 60.00263 * 1 2 3 30 30 H 1.09010 * 109.47001 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.58658 * 6.65192 * 8 7 5 32 32 H 1.08995 * 109.59132 * 246.22386 * 8 7 5 33 33 H 1.09006 * 109.49720 * 294.68577 * 9 8 7 34 34 H 1.09005 * 109.52437 * 174.60498 * 9 8 7 35 35 H 1.09004 * 109.45565 * 178.61641 * 10 9 8 36 36 H 1.08998 * 109.46094 * 58.65723 * 10 9 8 37 37 H 1.09000 * 109.49582 * 181.31648 * 11 10 9 38 38 H 1.09002 * 109.49725 * 301.38437 * 11 10 9 39 39 H 1.08994 * 110.71842 * 259.96876 * 16 14 12 40 40 H 1.08999 * 110.72033 * 23.24867 * 16 14 12 41 41 H 1.08995 * 110.99808 * 206.42280 * 17 16 14 42 42 H 1.08995 * 111.00013 * 82.57370 * 17 16 14 43 43 H 1.09000 * 110.36597 * 278.16434 * 18 17 16 44 44 H 1.08999 * 110.45687 * 155.89520 * 18 17 16 45 45 H 0.96998 * 119.99955 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.2716 -0.9539 2.1432 7 7 3.3269 -1.0749 1.3167 8 6 4.2170 -0.9570 0.1538 9 6 5.4518 -0.1454 0.5581 10 6 6.1020 -0.7902 1.7843 11 6 5.1134 -0.7800 2.9526 12 6 3.8744 -1.5983 2.5759 13 1 4.1528 -2.6441 2.4460 14 6 2.8243 -1.4776 3.6820 15 1 2.2486 -0.5617 3.5482 16 6 1.8847 -2.7014 3.6495 17 6 1.6399 -2.9916 5.1540 18 6 3.0166 -2.6344 5.7676 19 7 3.4820 -1.4671 4.9969 20 6 4.3778 -0.5280 5.4337 21 1 5.0596 -0.0660 4.7350 22 6 4.4097 -0.1698 6.7744 23 7 5.3770 0.5992 7.2273 24 14 3.0797 -0.7793 7.9357 25 1 3.4740 -2.0989 8.4911 26 1 2.9074 0.1931 9.0449 27 1 1.8001 -0.9166 7.1947 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.6944 -0.4481 -0.6562 32 1 4.5238 -1.9503 -0.1738 33 1 5.1536 0.8751 0.7987 34 1 6.1645 -0.1314 -0.2666 35 1 6.9949 -0.2287 2.0592 36 1 6.3775 -1.8186 1.5507 37 1 5.5852 -1.2182 3.8321 38 1 4.8189 0.2465 3.1710 39 1 0.9492 -2.4561 3.1469 40 1 2.3719 -3.5490 3.1676 41 1 1.4011 -4.0428 5.3152 42 1 0.8555 -2.3487 5.5532 43 1 3.7109 -3.4667 5.6519 44 1 2.9086 -2.3751 6.8207 45 1 5.3991 0.8498 8.1641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025190044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:43 Heat of formation + Delta-G solvation = -48.617688 kcal Electronic energy + Delta-G solvation = -29832.387314 eV Core-core repulsion = 25716.848505 eV Total energy + Delta-G solvation = -4115.538809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.42245 -47.30788 -40.56848 -37.76688 -37.00176 -32.95542 -32.39076 -31.90615 -31.28220 -29.78265 -27.61668 -25.66110 -24.48974 -23.96319 -22.47865 -21.24166 -20.38830 -19.63189 -19.50114 -17.90685 -17.66140 -16.93337 -16.68858 -16.16886 -15.59524 -14.89143 -14.87616 -14.53332 -14.14806 -13.91910 -13.75323 -13.62824 -13.50346 -13.09015 -12.94853 -12.82442 -12.71985 -12.56477 -12.40978 -12.30603 -12.19869 -11.93762 -11.35966 -11.24976 -10.97187 -10.92436 -10.87060 -10.60921 -10.44410 -10.15325 -10.00351 -9.67656 -9.44373 -9.18551 -8.73766 -8.51671 -8.35875 -6.73675 -5.88597 -3.34501 2.25480 2.70926 3.36517 3.51231 3.56547 3.59263 3.83333 4.26432 4.47322 4.58514 4.88865 5.05882 5.11819 5.21066 5.26985 5.32629 5.41877 5.44436 5.56165 5.58717 5.62670 5.70951 5.72251 5.78389 5.87800 5.98628 6.04799 6.17808 6.21811 6.26438 6.31428 6.45455 6.53521 6.57651 6.67700 6.73653 6.93790 6.97882 7.17361 7.29023 7.38927 7.93163 8.08065 8.41336 8.91523 9.73920 10.32302 11.24755 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.005613 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.956162 B = 4987.197730 C = 5687.642826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.275 3.725 3 F -0.184 7.184 4 F -0.188 7.188 5 C 0.474 3.526 6 O -0.482 6.482 7 N -0.582 5.582 8 C 0.084 3.916 9 C -0.134 4.134 10 C -0.126 4.126 11 C -0.128 4.128 12 C 0.138 3.862 13 H 0.064 0.936 14 C 0.159 3.841 15 H 0.077 0.923 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.116 3.884 19 N -0.605 5.605 20 C -0.267 4.267 21 H 0.119 0.881 22 C 0.028 3.972 23 N -0.914 5.914 24 Si 0.899 3.101 25 H -0.290 1.290 26 H -0.309 1.309 27 H -0.272 1.272 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.027 0.973 44 H 0.037 0.963 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 -4.179 -16.978 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.235 3.765 3 F -0.165 7.165 4 F -0.170 7.170 5 C 0.257 3.743 6 O -0.357 6.357 7 N -0.314 5.314 8 C -0.039 4.039 9 C -0.172 4.172 10 C -0.164 4.164 11 C -0.165 4.165 12 C 0.034 3.966 13 H 0.082 0.918 14 C 0.053 3.947 15 H 0.095 0.905 16 C -0.152 4.152 17 C -0.176 4.176 18 C -0.009 4.009 19 N -0.332 5.332 20 C -0.394 4.394 21 H 0.135 0.865 22 C -0.172 4.172 23 N -0.558 5.558 24 Si 0.733 3.267 25 H -0.219 1.219 26 H -0.238 1.238 27 H -0.198 1.198 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.054 0.946 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.096 -4.144 -16.320 17.908 hybrid contribution -0.335 -0.256 0.569 0.709 sum -6.431 -4.400 -15.751 17.573 Atomic orbital electron populations 1.22575 0.89109 1.06196 1.05753 1.21680 0.95713 0.76307 0.82778 1.93084 1.90523 1.36305 1.96569 1.92908 1.89496 1.80973 1.53579 1.20661 0.83682 0.81630 0.88333 1.90790 1.55556 1.52979 1.36338 1.48287 1.08077 1.61663 1.13403 1.22318 0.92092 1.01291 0.88204 1.21929 0.96516 0.99986 0.98814 1.21687 0.99119 1.00153 0.95417 1.22643 0.94092 1.01706 0.98054 1.22285 0.95947 0.96398 0.81944 0.91807 1.21556 0.89662 0.98712 0.84798 0.90549 1.22800 1.00520 0.96421 0.95448 1.22788 0.98239 0.99729 0.96811 1.21939 0.93026 0.90586 0.95310 1.44873 1.50761 1.24916 1.12614 1.19555 1.10351 1.15020 0.94487 0.86457 1.25411 0.97194 0.96652 0.97921 1.69721 1.32313 1.38717 1.15009 0.86632 0.84159 0.76026 0.79834 1.21885 1.23844 1.19755 0.88107 0.89667 0.88811 0.88331 0.91082 0.91401 0.91231 0.91757 0.92600 0.86715 0.90610 0.89308 0.93159 0.92203 0.91763 0.95516 0.94601 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.77 37.15 0.33 -1.43 16 2 C 0.27 3.45 1.80 -27.89 -0.05 3.40 16 3 F -0.18 -2.53 16.94 2.25 0.04 -2.49 16 4 F -0.19 -2.19 14.02 2.25 0.03 -2.16 16 5 C 0.47 7.30 6.88 -10.98 -0.08 7.22 16 6 O -0.48 -8.35 9.14 5.55 0.05 -8.30 16 7 N -0.58 -8.93 2.97 -165.21 -0.49 -9.42 16 8 C 0.08 1.04 5.95 -3.71 -0.02 1.02 16 9 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 10 C -0.13 -1.84 5.88 -26.69 -0.16 -2.00 16 11 C -0.13 -2.37 3.34 -26.61 -0.09 -2.46 16 12 C 0.14 2.44 2.83 -67.59 -0.19 2.25 16 13 H 0.06 1.11 7.55 -51.93 -0.39 0.72 16 14 C 0.16 3.28 2.40 -66.95 -0.16 3.12 16 15 H 0.08 1.77 5.60 -52.57 -0.29 1.48 16 16 C -0.11 -2.08 5.66 -24.89 -0.14 -2.22 16 17 C -0.14 -2.61 7.09 -24.58 -0.17 -2.78 16 18 C 0.12 2.59 5.98 -2.54 -0.02 2.58 16 19 N -0.61 -14.48 2.63 -162.58 -0.43 -14.91 16 20 C -0.27 -7.25 8.58 -15.06 -0.13 -7.38 16 21 H 0.12 3.22 4.00 -52.49 -0.21 3.01 16 22 C 0.03 0.80 5.49 -17.43 -0.10 0.70 16 23 N -0.91 -27.88 13.97 55.49 0.78 -27.10 16 24 Si 0.90 23.46 24.55 -169.99 -4.17 19.29 16 25 H -0.29 -7.42 6.89 56.52 0.39 -7.03 16 26 H -0.31 -8.22 7.11 56.52 0.40 -7.82 16 27 H -0.27 -7.00 6.67 56.52 0.38 -6.62 16 28 H 0.10 1.04 7.95 -51.93 -0.41 0.63 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.10 1.15 4.54 -51.93 -0.24 0.92 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.11 2.48 5.74 -51.93 -0.30 2.18 16 38 H 0.08 1.62 6.85 -51.93 -0.36 1.26 16 39 H 0.09 1.59 5.78 -51.93 -0.30 1.29 16 40 H 0.05 0.85 7.49 -51.93 -0.39 0.46 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.88 2.32 -51.93 -0.12 0.76 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -30.39 329.08 -6.78 -37.17 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.40 Total: 2.81 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.14 Total: 0.16 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.14 Total: -51.44 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.05 Total: -8.30 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.07 Total: -4.65 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.17 Total: 19.29 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.39 -6.78 -37.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025190044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.449 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds