Wall clock time and date at job start Tue Mar 31 2020 12:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39907 * 109.47067 * 2 1 4 4 F 1.39903 * 109.47039 * 240.00200 * 2 1 3 5 5 C 1.50702 * 109.47290 * 120.00113 * 2 1 3 6 6 O 1.21280 * 119.99969 * 341.32748 * 5 2 1 7 7 N 1.34772 * 119.99795 * 161.33345 * 5 2 1 8 8 C 1.46926 * 120.63622 * 3.85062 * 7 5 2 9 9 C 1.53184 * 108.78139 * 126.38972 * 8 7 5 10 10 C 1.53046 * 109.31146 * 54.63407 * 9 8 7 11 11 C 1.53037 * 109.53782 * 298.63655 * 10 9 8 12 12 C 1.46931 * 120.62934 * 183.84581 * 7 5 2 13 13 H 1.09008 * 109.70039 * 113.74850 * 12 7 5 14 14 C 1.53001 * 109.58465 * 353.39828 * 12 7 5 15 15 H 1.09001 * 109.99725 * 52.93840 * 14 12 7 16 16 C 1.54328 * 109.99070 * 291.89786 * 14 12 7 17 17 C 1.55158 * 103.02306 * 218.66609 * 16 14 12 18 18 C 1.54913 * 101.58008 * 35.30767 * 17 16 14 19 19 N 1.47029 * 109.88203 * 174.03247 * 14 12 7 20 20 C 1.36936 * 125.64897 * 298.39723 * 19 14 12 21 21 H 1.08001 * 119.99390 * 311.90437 * 20 19 14 22 22 C 1.38806 * 119.99971 * 131.90131 * 20 19 14 23 23 N 1.31619 * 120.00173 * 350.19474 * 22 20 19 24 24 Si 1.86803 * 119.99680 * 170.18834 * 22 20 19 25 25 H 1.48501 * 109.46985 * 175.00855 * 24 22 20 26 26 H 1.48500 * 109.47322 * 55.00746 * 24 22 20 27 27 H 1.48502 * 109.47007 * 295.00483 * 24 22 20 28 28 H 1.09001 * 109.47359 * 304.95470 * 1 2 3 29 29 H 1.09002 * 109.47411 * 64.95757 * 1 2 3 30 30 H 1.09005 * 109.46927 * 184.96389 * 1 2 3 31 31 H 1.09007 * 109.58190 * 6.59803 * 8 7 5 32 32 H 1.08999 * 109.58669 * 246.18191 * 8 7 5 33 33 H 1.08997 * 109.49968 * 294.68754 * 9 8 7 34 34 H 1.08997 * 109.50240 * 174.58564 * 9 8 7 35 35 H 1.09003 * 109.45862 * 178.61268 * 10 9 8 36 36 H 1.09008 * 109.45686 * 58.65718 * 10 9 8 37 37 H 1.08996 * 109.49861 * 301.41194 * 11 10 9 38 38 H 1.09007 * 109.49703 * 181.31295 * 11 10 9 39 39 H 1.09004 * 110.84841 * 100.20326 * 16 14 12 40 40 H 1.08998 * 110.66816 * 337.05139 * 16 14 12 41 41 H 1.09000 * 111.00540 * 277.23647 * 17 16 14 42 42 H 1.09002 * 111.00699 * 153.37954 * 17 16 14 43 43 H 1.08993 * 110.36756 * 204.15038 * 18 17 16 44 44 H 1.08997 * 110.45602 * 81.87725 * 18 17 16 45 45 H 0.96997 * 120.00006 * 4.45127 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.2964 -0.8709 2.1810 7 7 3.2995 -1.1673 1.2746 8 6 4.2282 -0.9071 0.1662 9 6 5.4972 -0.2585 0.7279 10 6 6.0720 -1.1460 1.8344 11 6 5.0526 -1.2747 2.9685 12 6 3.7786 -1.9349 2.4322 13 1 3.9974 -2.9589 2.1290 14 6 2.7058 -1.9411 3.5230 15 1 1.7564 -2.2822 3.1102 16 6 2.5412 -0.5230 4.1092 17 6 2.3290 -0.7926 5.6224 18 6 3.2491 -2.0176 5.8520 19 7 3.1178 -2.8235 4.6246 20 6 3.3475 -4.1698 4.5255 21 1 2.6295 -4.8048 4.0278 22 6 4.5030 -4.7183 5.0645 23 7 5.4653 -3.9314 5.4972 24 14 4.6924 -6.5734 5.1760 25 1 6.0526 -6.9031 5.6723 26 1 4.4973 -7.1726 3.8314 27 1 3.6778 -7.1190 6.1131 28 1 -0.3634 0.5888 0.8423 29 1 -0.3634 0.4350 -0.9311 30 1 -0.3633 -1.0239 0.0889 31 1 3.7605 -0.2334 -0.5519 32 1 4.4842 -1.8464 -0.3241 33 1 5.2539 0.7219 1.1375 34 1 6.2327 -0.1482 -0.0689 35 1 6.9887 -0.6989 2.2190 36 1 6.2920 -2.1340 1.4298 37 1 4.8136 -0.2848 3.3570 38 1 5.4717 -1.8878 3.7665 39 1 1.6716 -0.0246 3.6807 40 1 3.4423 0.0679 3.9454 41 1 1.2887 -1.0405 5.8330 42 1 2.6550 0.0584 6.2204 43 1 2.9126 -2.5877 6.7179 44 1 4.2823 -1.6979 5.9873 45 1 5.3410 -2.9694 5.4993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025190051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:50 Heat of formation + Delta-G solvation = -78.440008 kcal Electronic energy + Delta-G solvation = -29936.268675 eV Core-core repulsion = 25819.436673 eV Total energy + Delta-G solvation = -4116.832002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.36122 -47.26360 -40.57827 -37.61884 -36.83743 -32.78503 -32.68450 -31.72197 -31.04955 -29.04574 -27.35941 -25.56719 -24.25128 -23.94546 -22.62662 -20.95607 -20.46318 -19.81299 -18.88180 -17.83956 -17.82599 -17.04259 -16.65976 -15.49161 -15.36313 -15.02075 -14.54940 -14.35387 -14.12463 -13.86372 -13.75901 -13.60855 -13.56497 -13.35117 -13.12206 -12.97890 -12.87195 -12.67544 -12.45859 -12.08153 -11.70110 -11.40822 -11.35326 -11.25105 -10.95718 -10.75549 -10.58744 -10.44427 -10.30709 -10.08626 -10.04648 -9.71708 -9.61910 -9.28401 -8.96150 -8.40211 -8.11872 -6.59412 -5.90506 -3.47927 2.33013 2.75800 3.46863 3.48959 3.63108 3.66990 3.87114 4.29797 4.49426 4.55450 4.88948 5.04061 5.16854 5.26520 5.38077 5.41579 5.44627 5.51861 5.55298 5.61451 5.71892 5.73348 5.84757 5.90637 6.00525 6.04357 6.07647 6.19665 6.31281 6.40675 6.43235 6.50016 6.62858 6.76262 6.80230 6.97978 7.02075 7.06128 7.19303 7.41263 7.48839 8.06268 8.22867 8.66256 9.08443 9.81497 10.55277 11.23324 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.005246 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.241811 B = 5336.027878 C = 5686.807811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.275 3.725 3 F -0.188 7.188 4 F -0.190 7.190 5 C 0.467 3.533 6 O -0.478 6.478 7 N -0.581 5.581 8 C 0.094 3.906 9 C -0.132 4.132 10 C -0.120 4.120 11 C -0.129 4.129 12 C 0.139 3.861 13 H 0.082 0.918 14 C 0.161 3.839 15 H 0.072 0.928 16 C -0.128 4.128 17 C -0.137 4.137 18 C 0.133 3.867 19 N -0.591 5.591 20 C -0.334 4.334 21 H 0.045 0.955 22 C -0.010 4.010 23 N -0.916 5.916 24 Si 1.072 2.928 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.292 1.292 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.025 0.975 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 9.715 -11.601 15.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.236 3.764 3 F -0.169 7.169 4 F -0.171 7.171 5 C 0.250 3.750 6 O -0.353 6.353 7 N -0.313 5.313 8 C -0.029 4.029 9 C -0.170 4.170 10 C -0.157 4.157 11 C -0.166 4.166 12 C 0.036 3.964 13 H 0.100 0.900 14 C 0.055 3.945 15 H 0.089 0.911 16 C -0.166 4.166 17 C -0.176 4.176 18 C 0.008 3.992 19 N -0.318 5.318 20 C -0.464 4.464 21 H 0.063 0.937 22 C -0.214 4.214 23 N -0.555 5.555 24 Si 0.902 3.098 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.219 1.219 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.042 0.958 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.585 8.297 -10.664 13.979 hybrid contribution -0.665 1.318 -0.717 1.641 sum -4.250 9.615 -11.381 15.494 Atomic orbital electron populations 1.22571 0.89154 1.06480 1.05364 1.21668 0.95688 0.76051 0.83038 1.93056 1.90540 1.36673 1.96657 1.92991 1.89992 1.80867 1.53229 1.20627 0.83977 0.82267 0.88160 1.90790 1.56689 1.54724 1.33135 1.48363 1.09613 1.52531 1.20800 1.22089 0.90732 1.01316 0.88778 1.21913 0.96518 0.99504 0.99056 1.21538 0.98514 0.99634 0.96041 1.22052 0.94683 1.01414 0.98501 1.22198 0.96069 0.93680 0.84485 0.90005 1.21792 0.94349 0.90263 0.88105 0.91083 1.23116 1.01013 0.97413 0.95029 1.22781 0.99948 0.98287 0.96574 1.21688 0.95553 0.90928 0.91007 1.44533 1.81597 1.03829 1.01796 1.19550 1.04213 0.81555 1.41072 0.93708 1.26338 0.91016 1.06596 0.97450 1.70784 1.31457 1.06556 1.46742 0.83414 0.75945 0.74315 0.76161 1.21037 1.21808 1.21858 0.88314 0.89699 0.88708 0.89441 0.90875 0.91734 0.91018 0.92103 0.91894 0.92045 0.88584 0.89805 0.92529 0.92282 0.92873 0.94371 0.95764 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.75 37.16 0.33 -1.51 16 2 C 0.28 3.58 1.77 -27.88 -0.05 3.53 16 3 F -0.19 -2.49 16.62 2.25 0.04 -2.45 16 4 F -0.19 -2.42 14.30 2.25 0.03 -2.39 16 5 C 0.47 7.56 6.73 -10.99 -0.07 7.49 16 6 O -0.48 -8.73 8.98 5.56 0.05 -8.68 16 7 N -0.58 -9.63 2.95 -165.22 -0.49 -10.12 16 8 C 0.09 1.28 5.66 -3.71 -0.02 1.26 16 9 C -0.13 -1.70 6.08 -26.61 -0.16 -1.87 16 10 C -0.12 -1.86 5.88 -26.69 -0.16 -2.02 16 11 C -0.13 -2.45 4.96 -26.61 -0.13 -2.59 16 12 C 0.14 2.77 2.71 -67.60 -0.18 2.59 16 13 H 0.08 1.87 7.81 -51.92 -0.41 1.47 16 14 C 0.16 3.54 2.28 -66.95 -0.15 3.39 16 15 H 0.07 1.72 5.83 -52.16 -0.30 1.41 16 16 C -0.13 -2.53 5.11 -24.89 -0.13 -2.66 16 17 C -0.14 -2.73 7.09 -24.58 -0.17 -2.90 16 18 C 0.13 3.16 6.12 -2.53 -0.02 3.15 16 19 N -0.59 -14.96 2.39 -162.57 -0.39 -15.35 16 20 C -0.33 -9.31 9.42 -15.06 -0.14 -9.45 16 21 H 0.05 1.29 7.85 -52.49 -0.41 0.88 16 22 C -0.01 -0.27 5.37 -17.43 -0.09 -0.36 16 23 N -0.92 -26.66 13.51 55.49 0.75 -25.91 16 24 Si 1.07 25.06 29.93 -169.99 -5.09 19.97 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H 0.10 1.00 8.06 -51.93 -0.42 0.58 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.09 4.81 -51.93 -0.25 0.84 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.06 1.15 5.51 -51.93 -0.29 0.87 16 38 H 0.10 2.21 6.65 -51.92 -0.35 1.87 16 39 H 0.08 1.63 5.60 -51.92 -0.29 1.34 16 40 H 0.06 1.09 5.18 -51.93 -0.27 0.83 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.61 6.42 -51.93 -0.33 0.28 16 45 H 0.27 7.88 4.15 -40.82 -0.17 7.71 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -29.78 337.24 -7.68 -37.46 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.51 Total: 4.34 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.16 Total: -1.96 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.13 Total: -51.37 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.05 Total: -8.68 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.07 Total: -4.84 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.09 Total: 19.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.78 -7.68 -37.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025190051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.980 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds