Wall clock time and date at job start Tue Mar 31 2020 12:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39898 * 109.47418 * 2 1 4 4 F 1.39907 * 109.46965 * 239.99747 * 2 1 3 5 5 C 1.50698 * 109.47111 * 120.00214 * 2 1 3 6 6 O 1.21284 * 120.00158 * 15.36453 * 5 2 1 7 7 N 1.34780 * 120.00270 * 195.37236 * 5 2 1 8 8 C 1.46930 * 120.62473 * 5.82684 * 7 5 2 9 9 C 1.53190 * 108.77548 * 233.62976 * 8 7 5 10 10 C 1.53045 * 109.31260 * 305.37059 * 9 8 7 11 11 C 1.53034 * 109.54095 * 61.36172 * 10 9 8 12 12 C 1.46923 * 120.63503 * 185.84931 * 7 5 2 13 13 H 1.08993 * 109.59011 * 246.29744 * 12 7 5 14 14 C 1.53002 * 109.58521 * 6.58456 * 12 7 5 15 15 H 1.09005 * 109.99365 * 302.95140 * 14 12 7 16 16 C 1.54319 * 109.88356 * 64.04931 * 14 12 7 17 17 C 1.55153 * 102.94282 * 141.61307 * 16 14 12 18 18 C 1.54912 * 101.58060 * 324.49693 * 17 16 14 19 19 N 1.47016 * 109.88094 * 181.86050 * 14 12 7 20 20 C 1.36936 * 125.65310 * 61.60529 * 19 14 12 21 21 H 1.08003 * 119.99665 * 10.87207 * 20 19 14 22 22 C 1.38812 * 120.00143 * 190.87781 * 20 19 14 23 23 N 1.31617 * 120.00397 * 8.94417 * 22 20 19 24 24 Si 1.86804 * 119.99803 * 188.94719 * 22 20 19 25 25 H 1.48507 * 109.46979 * 84.99338 * 24 22 20 26 26 H 1.48502 * 109.47153 * 204.99223 * 24 22 20 27 27 H 1.48493 * 109.47229 * 324.99592 * 24 22 20 28 28 H 1.08998 * 109.47211 * 304.58174 * 1 2 3 29 29 H 1.08996 * 109.46990 * 64.58047 * 1 2 3 30 30 H 1.09006 * 109.47461 * 184.58054 * 1 2 3 31 31 H 1.08999 * 109.58978 * 353.41827 * 8 7 5 32 32 H 1.09002 * 109.58439 * 113.84698 * 8 7 5 33 33 H 1.08998 * 109.49810 * 65.31623 * 9 8 7 34 34 H 1.08999 * 109.49845 * 185.41703 * 9 8 7 35 35 H 1.09006 * 109.45856 * 181.38704 * 10 9 8 36 36 H 1.09001 * 109.45999 * 301.35648 * 10 9 8 37 37 H 1.09002 * 109.50208 * 178.68481 * 11 10 9 38 38 H 1.09002 * 109.49767 * 58.58980 * 11 10 9 39 39 H 1.09003 * 110.72050 * 259.97346 * 16 14 12 40 40 H 1.09001 * 110.72171 * 23.24965 * 16 14 12 41 41 H 1.08999 * 111.00844 * 206.42774 * 17 16 14 42 42 H 1.08994 * 111.04063 * 82.58492 * 17 16 14 43 43 H 1.09003 * 110.36460 * 278.17216 * 18 17 16 44 44 H 1.09004 * 110.46354 * 155.89580 * 18 17 16 45 45 H 0.96997 * 120.00469 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.2796 -1.4062 1.8788 7 7 3.3180 -0.5726 1.6105 8 6 4.2086 0.3644 0.9123 9 6 5.4624 -0.3909 0.4602 10 6 6.0995 -1.0825 1.6677 11 6 5.1135 -2.0929 2.2582 12 6 3.8558 -1.3568 2.7306 13 1 4.1080 -0.6905 3.5554 14 6 2.8101 -2.3733 3.1937 15 1 1.8888 -1.8605 3.4703 16 6 2.5280 -3.3873 2.0652 17 6 2.3652 -4.7255 2.8331 18 6 3.3991 -4.5570 3.9744 19 7 3.3248 -3.1315 4.3433 20 6 3.6776 -2.6016 5.5557 21 1 3.4258 -1.5781 5.7914 22 6 4.3588 -3.3797 6.4815 23 7 4.8204 -4.5625 6.1347 24 14 4.6205 -2.7481 8.2200 25 1 3.4271 -3.0629 9.0459 26 1 5.8167 -3.4017 8.8093 27 1 4.8257 -1.2778 8.1869 28 1 -0.3633 0.5833 0.8461 29 1 -0.3633 0.4411 -0.9281 30 1 -0.3634 -1.0244 0.0821 31 1 3.6966 0.7760 0.0425 32 1 4.4920 1.1715 1.5879 33 1 5.1882 -1.1384 -0.2842 34 1 6.1737 0.3117 0.0261 35 1 7.0056 -1.6004 1.3532 36 1 6.3507 -0.3371 2.4223 37 1 5.5764 -2.6017 3.1037 38 1 4.8425 -2.8244 1.4968 39 1 1.6092 -3.1313 1.5375 40 1 3.3693 -3.4391 1.3741 41 1 2.6195 -5.5740 2.1979 42 1 1.3560 -4.8275 3.2321 43 1 4.3994 -4.8055 3.6198 44 1 3.1326 -5.1835 4.8256 45 1 5.2961 -5.1064 6.7817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025190054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:54 Heat of formation + Delta-G solvation = -71.471892 kcal Electronic energy + Delta-G solvation = -29773.330408 eV Core-core repulsion = 25656.800567 eV Total energy + Delta-G solvation = -4116.529842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.42827 -47.31901 -40.59469 -37.59341 -36.73731 -32.74578 -32.56436 -31.67146 -31.03424 -29.20715 -27.26784 -25.56066 -24.41979 -23.98406 -22.60970 -20.97452 -20.38626 -19.74807 -18.93975 -17.90191 -17.53397 -16.99064 -16.47029 -15.45368 -15.39467 -14.93319 -14.55683 -14.44040 -14.34241 -14.00762 -13.72009 -13.63337 -13.53448 -13.34185 -13.13066 -12.89464 -12.68298 -12.48625 -12.10683 -12.02289 -11.77107 -11.43061 -11.31998 -11.21762 -10.93456 -10.83493 -10.64712 -10.54357 -10.26134 -10.04504 -9.99798 -9.67269 -9.58210 -9.50880 -8.88227 -8.50832 -8.19730 -6.69478 -5.69497 -3.01462 2.30200 2.73378 3.41483 3.47452 3.48113 3.60275 3.84664 4.27548 4.47098 4.54327 4.88431 5.01562 5.14064 5.25676 5.39224 5.42962 5.44742 5.55719 5.59476 5.62490 5.73285 5.78441 5.86878 5.94431 6.03294 6.04997 6.08955 6.15371 6.35084 6.41334 6.48162 6.56567 6.71029 6.80702 6.89680 6.99476 6.99722 7.41538 7.46488 7.61452 7.69166 7.85766 8.06311 8.35469 9.25906 9.88719 10.58531 11.42638 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017694 B = 0.004946 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.061282 B = 5660.012896 C = 6019.521540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.276 3.724 3 F -0.188 7.188 4 F -0.186 7.186 5 C 0.470 3.530 6 O -0.477 6.477 7 N -0.581 5.581 8 C 0.083 3.917 9 C -0.132 4.132 10 C -0.121 4.121 11 C -0.122 4.122 12 C 0.133 3.867 13 H 0.076 0.924 14 C 0.161 3.839 15 H 0.076 0.924 16 C -0.129 4.129 17 C -0.149 4.149 18 C 0.175 3.825 19 N -0.593 5.593 20 C -0.225 4.225 21 H 0.072 0.928 22 C -0.005 4.005 23 N -0.916 5.916 24 Si 0.906 3.094 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.283 1.283 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.023 0.977 44 H 0.064 0.936 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 9.203 -14.901 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.236 3.764 3 F -0.169 7.169 4 F -0.167 7.167 5 C 0.252 3.748 6 O -0.351 6.351 7 N -0.314 5.314 8 C -0.040 4.040 9 C -0.171 4.171 10 C -0.159 4.159 11 C -0.160 4.160 12 C 0.030 3.970 13 H 0.094 0.906 14 C 0.054 3.946 15 H 0.093 0.907 16 C -0.166 4.166 17 C -0.188 4.188 18 C 0.050 3.950 19 N -0.317 5.317 20 C -0.353 4.353 21 H 0.090 0.910 22 C -0.202 4.202 23 N -0.563 5.563 24 Si 0.736 3.264 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.082 0.918 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.701 8.759 -14.345 17.211 hybrid contribution 0.652 0.484 0.741 1.100 sum -3.048 9.244 -13.604 16.727 Atomic orbital electron populations 1.22591 0.89117 1.06885 1.05166 1.21670 0.95719 0.75445 0.83584 1.92918 1.89531 1.37714 1.96761 1.93065 1.90557 1.80798 1.52296 1.20572 0.83926 0.83835 0.86427 1.90788 1.55763 1.36725 1.51824 1.48355 1.08792 1.40647 1.33612 1.22307 0.91815 0.91800 0.98080 1.21913 0.96597 0.99894 0.98650 1.21567 0.98489 0.98872 0.96952 1.21922 0.94804 0.97446 1.01856 1.22357 0.95945 0.93291 0.85402 0.90620 1.21672 0.93944 0.91194 0.87822 0.90673 1.23069 1.00705 0.95455 0.97374 1.22987 1.00610 0.96107 0.99049 1.21358 0.93864 0.86025 0.93757 1.44704 1.75893 1.02403 1.08732 1.18954 1.29381 0.97104 0.89904 0.90985 1.24785 0.99528 0.97256 0.98624 1.69959 1.41439 1.11493 1.33427 0.86239 0.77234 0.77855 0.85033 1.21631 1.21830 1.20837 0.88788 0.89683 0.88013 0.88442 0.90970 0.91644 0.91112 0.92080 0.92024 0.88828 0.91832 0.90314 0.92668 0.93000 0.92560 0.95899 0.91767 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.89 37.16 0.33 -1.43 16 2 C 0.28 3.40 1.80 -27.89 -0.05 3.35 16 3 F -0.19 -2.23 14.00 2.25 0.03 -2.20 16 4 F -0.19 -2.39 16.91 2.25 0.04 -2.35 16 5 C 0.47 7.26 6.40 -10.98 -0.07 7.19 16 6 O -0.48 -8.44 9.14 5.55 0.05 -8.39 16 7 N -0.58 -9.07 2.94 -165.22 -0.49 -9.56 16 8 C 0.08 1.05 5.89 -3.71 -0.02 1.02 16 9 C -0.13 -1.58 6.08 -26.61 -0.16 -1.75 16 10 C -0.12 -1.71 5.88 -26.69 -0.16 -1.87 16 11 C -0.12 -2.18 4.96 -26.61 -0.13 -2.32 16 12 C 0.13 2.50 2.67 -67.60 -0.18 2.32 16 13 H 0.08 1.56 7.93 -51.93 -0.41 1.14 16 14 C 0.16 3.44 2.29 -66.96 -0.15 3.29 16 15 H 0.08 1.76 5.85 -52.33 -0.31 1.46 16 16 C -0.13 -2.50 4.93 -24.90 -0.12 -2.63 16 17 C -0.15 -3.04 7.09 -24.58 -0.17 -3.22 16 18 C 0.17 4.30 5.42 -2.53 -0.01 4.29 16 19 N -0.59 -14.90 2.62 -162.57 -0.43 -15.33 16 20 C -0.22 -6.14 9.77 -15.06 -0.15 -6.29 16 21 H 0.07 1.94 7.84 -52.48 -0.41 1.53 16 22 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 23 N -0.92 -26.59 10.69 55.49 0.59 -26.00 16 24 Si 0.91 22.06 29.56 -169.99 -5.03 17.03 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 1.03 7.77 -51.93 -0.40 0.62 16 31 H 0.10 1.14 4.57 -51.93 -0.24 0.90 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 2.02 7.88 -51.93 -0.41 1.61 16 38 H 0.06 1.15 5.68 -51.93 -0.29 0.85 16 39 H 0.08 1.50 5.61 -51.97 -0.29 1.21 16 40 H 0.05 1.05 5.41 -51.93 -0.28 0.77 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.02 0.60 8.06 -51.93 -0.42 0.18 16 44 H 0.06 1.76 6.96 -51.93 -0.36 1.40 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -29.37 339.81 -8.02 -37.39 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.77 Total: 2.56 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.15 Total: 1.73 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.32 Total: -50.89 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.05 Total: -8.39 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.07 Total: -4.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.37 -8.02 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025190054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.080 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds