Wall clock time and date at job start Tue Mar 31 2020 11:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46838 * 2 1 4 4 C 1.50699 * 109.46922 * 119.99423 * 2 1 3 5 5 O 1.21278 * 120.00041 * 235.37427 * 4 2 1 6 6 N 1.34783 * 120.00055 * 55.37949 * 4 2 1 7 7 C 1.49222 * 126.05445 * 354.08642 * 6 4 2 8 8 C 1.50345 * 104.85873 * 172.91435 * 7 6 4 9 9 H 1.08999 * 110.05475 * 278.94701 * 8 7 6 10 10 C 1.51201 * 125.53364 * 144.30954 * 8 7 6 11 11 C 1.56410 * 101.50532 * 203.98424 * 10 8 7 12 12 C 1.55939 * 105.85135 * 25.03522 * 11 10 8 13 13 H 1.08999 * 110.49415 * 248.83327 * 12 11 10 14 14 N 1.46501 * 110.49036 * 126.30849 * 12 11 10 15 15 C 1.36936 * 120.00416 * 86.45487 * 14 12 11 16 16 H 1.08005 * 119.99460 * 359.97438 * 15 14 12 17 17 C 1.38806 * 120.00377 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00111 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00165 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47195 * 90.00027 * 19 17 15 21 21 H 1.48493 * 109.47349 * 210.00285 * 19 17 15 22 22 H 1.48510 * 109.46849 * 330.00272 * 19 17 15 23 23 C 1.50289 * 104.15955 * 7.50624 * 12 11 10 24 24 H 1.09001 * 109.99792 * 79.58367 * 23 12 11 25 25 C 1.49690 * 126.06109 * 174.06122 * 6 4 2 26 26 C 1.52996 * 109.47351 * 239.99645 * 2 1 3 27 27 F 1.39898 * 109.47286 * 62.94379 * 26 2 1 28 28 F 1.39895 * 109.47093 * 182.94233 * 26 2 1 29 29 H 1.08993 * 109.47288 * 289.68764 * 1 2 3 30 30 H 1.09000 * 109.47161 * 49.68789 * 1 2 3 31 31 H 1.08998 * 109.46627 * 169.68373 * 1 2 3 32 32 H 1.09000 * 109.47329 * 185.90791 * 3 2 1 33 33 H 1.09007 * 109.46967 * 305.89972 * 3 2 1 34 34 H 1.08997 * 109.47764 * 65.90611 * 3 2 1 35 35 H 1.09000 * 110.35893 * 291.76281 * 7 6 4 36 36 H 1.09000 * 110.35830 * 53.96388 * 7 6 4 37 37 H 1.09006 * 111.05965 * 85.93624 * 10 8 7 38 38 H 1.08994 * 111.02997 * 322.02758 * 10 8 7 39 39 H 1.08997 * 110.18189 * 265.91917 * 11 10 8 40 40 H 1.08994 * 110.18560 * 144.15603 * 11 10 8 41 41 H 0.97006 * 120.00182 * 266.44857 * 14 12 11 42 42 H 0.97005 * 120.00025 * 179.97438 * 18 17 15 43 43 H 1.09007 * 110.84589 * 36.69144 * 25 6 4 44 44 H 1.08995 * 110.84590 * 273.08183 * 25 6 4 45 45 H 1.09001 * 109.47460 * 302.94947 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7971 -0.1481 1.9855 6 7 1.6317 -1.9703 1.4921 7 6 0.6065 -2.7419 0.7303 8 6 0.6608 -4.1292 1.3072 9 1 1.4895 -4.6845 0.8680 10 6 -0.5246 -5.0479 1.4995 11 6 -0.0117 -5.9839 2.6429 12 6 1.0678 -5.1632 3.4130 13 1 2.0584 -5.5873 3.2492 14 7 0.7581 -5.1248 4.8444 15 6 1.1867 -6.1337 5.6651 16 1 1.7527 -6.9581 5.2570 17 6 0.8928 -6.0975 7.0212 18 7 1.3043 -7.0676 7.8099 19 14 -0.0867 -4.6721 7.7270 20 1 -1.5356 -4.9932 7.6750 21 1 0.3191 -4.4425 9.1368 22 1 0.1777 -3.4471 6.9300 23 6 0.9790 -3.7871 2.8155 24 1 0.1348 -3.2479 3.2452 25 6 2.1367 -2.8439 2.5977 26 6 2.0401 -0.7213 -1.2491 27 9 1.6299 -0.0240 -2.3905 28 9 3.4374 -0.7802 -1.2157 29 1 -0.3633 0.3462 0.9675 30 1 -0.3633 0.6648 -0.7836 31 1 -0.3632 -1.0111 -0.1840 32 1 3.1248 1.4444 -0.1058 33 1 1.5929 1.9859 -0.8325 34 1 1.7656 1.9250 0.9381 35 1 -0.3823 -2.3078 0.8786 36 1 0.8566 -2.7604 -0.3304 37 1 -0.7310 -5.6163 0.5926 38 1 -1.4049 -4.4893 1.8173 39 1 0.4318 -6.8854 2.2204 40 1 -0.8321 -6.2463 3.3107 41 1 0.2495 -4.3845 5.2110 42 1 1.0993 -7.0421 8.7577 43 1 2.3339 -2.2582 3.4956 44 1 3.0275 -3.3888 2.2854 45 1 1.6343 -1.7326 -1.2760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026351849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:07 Heat of formation + Delta-G solvation = -103.616056 kcal Electronic energy + Delta-G solvation = -28165.427025 eV Core-core repulsion = 24047.503308 eV Total energy + Delta-G solvation = -4117.923717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.37176 -47.32123 -40.99641 -39.19525 -35.77212 -35.38269 -33.52523 -31.25832 -29.93534 -28.97107 -27.67983 -26.86571 -25.72354 -24.23363 -22.73471 -21.65102 -20.48736 -19.67462 -19.16980 -17.93822 -17.83720 -17.54680 -17.28776 -16.43101 -16.07026 -15.19507 -15.05604 -14.79382 -14.33695 -14.23862 -14.00128 -13.80243 -13.70684 -13.67762 -13.30767 -13.01118 -12.93599 -12.74435 -12.64817 -12.45369 -12.20822 -12.03673 -11.99098 -11.69487 -11.53171 -11.30028 -10.95520 -10.88015 -10.87434 -10.57746 -10.46394 -10.11377 -10.02579 -9.83506 -9.61954 -8.99192 -8.86026 -7.33389 -5.81725 -3.18189 2.24019 2.54483 3.34086 3.35813 3.36862 3.42778 3.65043 3.71281 3.96131 4.06606 4.45821 4.52009 4.54753 4.64377 4.67230 4.89203 4.97630 5.06861 5.11669 5.17620 5.26276 5.35841 5.40921 5.43464 5.45781 5.50188 5.59957 5.62851 5.68297 5.76655 5.84856 5.89581 5.93910 5.99106 6.07552 6.13504 6.26993 6.43453 6.63560 6.87112 7.25025 7.87633 7.93801 8.37334 9.14839 9.87418 10.06081 11.36438 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.003460 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.157899 B = 8091.249733 C = 8603.436639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C -0.132 4.132 4 C 0.542 3.458 5 O -0.521 6.521 6 N -0.624 5.624 7 C 0.110 3.890 8 C -0.130 4.130 9 H 0.086 0.914 10 C -0.098 4.098 11 C -0.143 4.143 12 C 0.202 3.798 13 H 0.063 0.937 14 N -0.744 5.744 15 C -0.246 4.246 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.932 5.932 19 Si 0.883 3.117 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.121 4.121 24 H 0.080 0.920 25 C 0.128 3.872 26 C 0.270 3.730 27 F -0.196 7.196 28 F -0.196 7.196 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 12.386 -21.587 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.134 4.134 3 C -0.189 4.189 4 C 0.328 3.672 5 O -0.396 6.396 6 N -0.360 5.360 7 C -0.011 4.011 8 C -0.150 4.150 9 H 0.104 0.896 10 C -0.136 4.136 11 C -0.183 4.183 12 C 0.091 3.909 13 H 0.081 0.919 14 N -0.386 5.386 15 C -0.376 4.376 16 H 0.109 0.891 17 C -0.189 4.189 18 N -0.580 5.580 19 Si 0.713 3.287 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.141 4.141 24 H 0.098 0.902 25 C 0.008 3.992 26 C 0.216 3.784 27 F -0.178 7.178 28 F -0.177 7.177 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.536 12.593 -21.084 24.812 hybrid contribution -0.667 0.949 0.526 1.273 sum -4.203 13.542 -20.558 24.974 Atomic orbital electron populations 1.22117 0.90335 1.04238 1.04406 1.21913 0.99689 0.99140 0.92659 1.21685 1.02471 0.91289 1.03465 1.19580 0.80947 0.80206 0.86459 1.90738 1.35200 1.64715 1.48928 1.49860 1.40950 1.12969 1.32202 1.21666 0.92332 0.92251 0.94842 1.22257 1.01364 0.94251 0.97115 0.89565 1.21811 0.95866 0.96873 0.99062 1.23757 1.00480 0.97940 0.96154 1.20047 0.96781 0.89996 0.84058 0.91874 1.42845 1.66399 1.26431 1.02957 1.19063 1.29000 1.00296 0.89241 0.89109 1.24666 1.00546 0.97630 0.96052 1.69697 1.50660 1.32985 1.04618 0.86583 0.80391 0.83055 0.78685 1.21096 1.21702 1.20349 1.22532 0.98404 0.97627 0.95536 0.90151 1.21563 0.96419 0.91537 0.89703 1.21981 0.76756 0.96749 0.82872 1.92986 1.90037 1.81947 1.52799 1.93024 1.30817 1.97296 1.96584 0.90517 0.90323 0.90456 0.91091 0.91072 0.90573 0.90132 0.91408 0.91793 0.91585 0.92123 0.90594 0.80554 0.92999 0.89680 0.90523 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 7.68 37.16 0.29 -0.78 16 2 C -0.13 -1.25 0.46 -155.66 -0.07 -1.32 16 3 C -0.13 -1.29 7.53 37.16 0.28 -1.01 16 4 C 0.54 7.08 6.24 -10.98 -0.07 7.01 16 5 O -0.52 -8.93 16.26 5.56 0.09 -8.84 16 6 N -0.62 -7.42 3.42 -171.56 -0.59 -8.00 16 7 C 0.11 0.95 4.73 -3.86 -0.02 0.93 16 8 C -0.13 -1.33 2.77 -90.16 -0.25 -1.58 16 9 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 10 C -0.10 -1.03 6.73 -25.80 -0.17 -1.20 16 11 C -0.14 -2.08 6.73 -23.33 -0.16 -2.24 16 12 C 0.20 3.44 3.39 -67.71 -0.23 3.21 16 13 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 14 N -0.74 -16.46 4.93 -53.21 -0.26 -16.72 16 15 C -0.25 -6.65 10.46 -15.06 -0.16 -6.80 16 16 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 17 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 18 N -0.93 -28.75 13.97 55.49 0.78 -27.97 16 19 Si 0.88 21.70 27.74 -169.99 -4.71 16.98 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 23 C -0.12 -1.67 2.41 -90.34 -0.22 -1.88 16 24 H 0.08 1.17 7.93 -51.93 -0.41 0.76 16 25 C 0.13 1.78 6.83 -3.32 -0.02 1.76 16 26 C 0.27 2.46 4.13 37.16 0.15 2.62 16 27 F -0.20 -1.81 16.60 2.25 0.04 -1.77 16 28 F -0.20 -2.34 16.47 2.25 0.04 -2.31 16 29 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 31 H 0.08 0.43 4.75 -51.93 -0.25 0.18 16 32 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 33 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 34 H 0.08 0.77 8.00 -51.93 -0.42 0.36 16 35 H 0.08 0.59 6.44 -51.93 -0.33 0.26 16 36 H 0.07 0.43 5.25 -51.93 -0.27 0.16 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.28 7.98 -51.93 -0.41 0.86 16 41 H 0.36 7.97 5.53 -40.82 -0.23 7.75 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.12 0.78 5.16 -51.93 -0.27 0.51 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -32.58 351.71 -6.85 -39.43 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.78 Total: 5.08 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.74 Total: -1.18 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.07 Total: -52.70 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.07 Total: -4.08 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.58 -6.85 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026351849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.186 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds