Wall clock time and date at job start Tue Mar 31 2020 11:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46838 * 2 1 4 4 C 1.50699 * 109.46922 * 119.99423 * 2 1 3 5 5 O 1.21278 * 120.00041 * 235.37427 * 4 2 1 6 6 N 1.34783 * 120.00055 * 55.37949 * 4 2 1 7 7 C 1.49222 * 126.05445 * 354.08642 * 6 4 2 8 8 C 1.50345 * 104.85873 * 172.91435 * 7 6 4 9 9 H 1.08999 * 110.05475 * 278.94701 * 8 7 6 10 10 C 1.51201 * 125.53364 * 144.30954 * 8 7 6 11 11 C 1.56410 * 101.50532 * 203.98424 * 10 8 7 12 12 C 1.55939 * 105.85135 * 25.03522 * 11 10 8 13 13 H 1.08999 * 110.49415 * 248.83327 * 12 11 10 14 14 N 1.46501 * 110.49036 * 126.30849 * 12 11 10 15 15 C 1.36936 * 120.00416 * 86.45487 * 14 12 11 16 16 H 1.08005 * 119.99460 * 359.97438 * 15 14 12 17 17 C 1.38806 * 120.00377 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00111 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00165 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47195 * 90.00027 * 19 17 15 21 21 H 1.48493 * 109.47349 * 210.00285 * 19 17 15 22 22 H 1.48510 * 109.46849 * 330.00272 * 19 17 15 23 23 C 1.50289 * 104.15955 * 7.50624 * 12 11 10 24 24 H 1.09001 * 109.99792 * 79.58367 * 23 12 11 25 25 C 1.49690 * 126.06109 * 174.06122 * 6 4 2 26 26 C 1.52996 * 109.47351 * 239.99645 * 2 1 3 27 27 F 1.39898 * 109.47286 * 62.94379 * 26 2 1 28 28 F 1.39895 * 109.47093 * 182.94233 * 26 2 1 29 29 H 1.08993 * 109.47288 * 289.68764 * 1 2 3 30 30 H 1.09000 * 109.47161 * 49.68789 * 1 2 3 31 31 H 1.08998 * 109.46627 * 169.68373 * 1 2 3 32 32 H 1.09000 * 109.47329 * 185.90791 * 3 2 1 33 33 H 1.09007 * 109.46967 * 305.89972 * 3 2 1 34 34 H 1.08997 * 109.47764 * 65.90611 * 3 2 1 35 35 H 1.09000 * 110.35893 * 291.76281 * 7 6 4 36 36 H 1.09000 * 110.35830 * 53.96388 * 7 6 4 37 37 H 1.09006 * 111.05965 * 85.93624 * 10 8 7 38 38 H 1.08994 * 111.02997 * 322.02758 * 10 8 7 39 39 H 1.08997 * 110.18189 * 265.91917 * 11 10 8 40 40 H 1.08994 * 110.18560 * 144.15603 * 11 10 8 41 41 H 0.97006 * 120.00182 * 266.44857 * 14 12 11 42 42 H 0.97005 * 120.00025 * 179.97438 * 18 17 15 43 43 H 1.09007 * 110.84589 * 36.69144 * 25 6 4 44 44 H 1.08995 * 110.84590 * 273.08183 * 25 6 4 45 45 H 1.09001 * 109.47460 * 302.94947 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7971 -0.1481 1.9855 6 7 1.6317 -1.9703 1.4921 7 6 0.6065 -2.7419 0.7303 8 6 0.6608 -4.1292 1.3072 9 1 1.4895 -4.6845 0.8680 10 6 -0.5246 -5.0479 1.4995 11 6 -0.0117 -5.9839 2.6429 12 6 1.0678 -5.1632 3.4130 13 1 2.0584 -5.5873 3.2492 14 7 0.7581 -5.1248 4.8444 15 6 1.1867 -6.1337 5.6651 16 1 1.7527 -6.9581 5.2570 17 6 0.8928 -6.0975 7.0212 18 7 1.3043 -7.0676 7.8099 19 14 -0.0867 -4.6721 7.7270 20 1 -1.5356 -4.9932 7.6750 21 1 0.3191 -4.4425 9.1368 22 1 0.1777 -3.4471 6.9300 23 6 0.9790 -3.7871 2.8155 24 1 0.1348 -3.2479 3.2452 25 6 2.1367 -2.8439 2.5977 26 6 2.0401 -0.7213 -1.2491 27 9 1.6299 -0.0240 -2.3905 28 9 3.4374 -0.7802 -1.2157 29 1 -0.3633 0.3462 0.9675 30 1 -0.3633 0.6648 -0.7836 31 1 -0.3632 -1.0111 -0.1840 32 1 3.1248 1.4444 -0.1058 33 1 1.5929 1.9859 -0.8325 34 1 1.7656 1.9250 0.9381 35 1 -0.3823 -2.3078 0.8786 36 1 0.8566 -2.7604 -0.3304 37 1 -0.7310 -5.6163 0.5926 38 1 -1.4049 -4.4893 1.8173 39 1 0.4318 -6.8854 2.2204 40 1 -0.8321 -6.2463 3.3107 41 1 0.2495 -4.3845 5.2110 42 1 1.0993 -7.0421 8.7577 43 1 2.3339 -2.2582 3.4956 44 1 3.0275 -3.3888 2.2854 45 1 1.6343 -1.7326 -1.2760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026351849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:04 Heat of formation + Delta-G solvation = -125.071450 kcal Electronic energy + Delta-G solvation = -28166.357401 eV Core-core repulsion = 24047.503308 eV Total energy + Delta-G solvation = -4118.854093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -50.10758 -48.07046 -41.98687 -40.25322 -37.02671 -36.33817 -35.08953 -33.08555 -31.03820 -30.10829 -28.42569 -27.53237 -27.03300 -25.22590 -24.50189 -22.59715 -21.56971 -20.69305 -20.23176 -19.57684 -18.61993 -18.55141 -18.14333 -17.52584 -17.00667 -16.58311 -16.01638 -15.97852 -15.87733 -15.15033 -15.00324 -14.85956 -14.57044 -14.54176 -14.42659 -14.34796 -13.98556 -13.80792 -13.63007 -13.29531 -13.27131 -13.17948 -13.01660 -12.88578 -12.63501 -12.42468 -12.34719 -12.22010 -12.11656 -11.83101 -11.66417 -11.55625 -11.36275 -11.07099 -11.00637 -10.85950 -9.83705 -9.29304 -8.02458 -5.34873 1.29565 1.35921 1.38839 1.45740 1.60017 2.47310 2.64217 2.83618 3.00124 3.08156 3.30234 3.35144 3.52133 3.70926 3.87250 3.89231 3.96122 3.99505 4.14480 4.26713 4.38842 4.43587 4.50895 4.57463 4.59991 4.64915 4.68889 4.73838 4.75186 4.76932 4.90365 4.90778 5.00052 5.09638 5.11610 5.17751 5.25794 5.35339 5.52982 5.55726 5.79817 6.22732 6.31727 6.89780 7.08517 7.85882 8.02816 9.19310 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.003460 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.157899 B = 8091.249733 C = 8603.436639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.132 4.132 4 C 0.536 3.464 5 O -0.574 6.574 6 N -0.620 5.620 7 C 0.107 3.893 8 C -0.108 4.108 9 H 0.092 0.908 10 C -0.082 4.082 11 C -0.140 4.140 12 C 0.190 3.810 13 H 0.046 0.954 14 N -0.750 5.750 15 C -0.225 4.225 16 H 0.059 0.941 17 C -0.064 4.064 18 N -0.985 5.985 19 Si 0.951 3.049 20 H -0.275 1.275 21 H -0.300 1.300 22 H -0.258 1.258 23 C -0.125 4.125 24 H 0.078 0.922 25 C 0.127 3.873 26 C 0.269 3.731 27 F -0.194 7.194 28 F -0.216 7.216 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.363 0.637 42 H 0.256 0.744 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 13.723 -25.013 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.129 4.129 3 C -0.190 4.190 4 C 0.325 3.675 5 O -0.453 6.453 6 N -0.354 5.354 7 C -0.012 4.012 8 C -0.127 4.127 9 H 0.110 0.890 10 C -0.120 4.120 11 C -0.180 4.180 12 C 0.081 3.919 13 H 0.065 0.935 14 N -0.393 5.393 15 C -0.356 4.356 16 H 0.077 0.923 17 C -0.255 4.255 18 N -0.636 5.636 19 Si 0.779 3.221 20 H -0.201 1.201 21 H -0.227 1.227 22 H -0.183 1.183 23 C -0.145 4.145 24 H 0.097 0.903 25 C 0.006 3.994 26 C 0.215 3.785 27 F -0.175 7.175 28 F -0.198 7.198 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.197 0.803 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.102 13.939 -24.607 28.931 hybrid contribution 0.219 0.469 1.527 1.612 sum -5.883 14.408 -23.080 27.837 Atomic orbital electron populations 1.22180 0.87616 1.06125 1.04887 1.21919 1.01682 0.98188 0.91087 1.21691 1.01305 0.92096 1.03887 1.20244 0.80103 0.80188 0.87006 1.90715 1.37617 1.66015 1.50951 1.49866 1.41232 1.12694 1.31648 1.21982 0.92657 0.90461 0.96128 1.22231 1.01446 0.95335 0.93726 0.88961 1.21723 0.95889 0.96052 0.98293 1.23580 0.98632 0.98715 0.97103 1.20331 0.96872 0.92867 0.81812 0.93546 1.42885 1.66386 1.25201 1.04784 1.19039 1.26731 1.00050 0.89747 0.92322 1.25442 1.02776 1.00637 0.96646 1.69876 1.53340 1.35630 1.04736 0.85467 0.78998 0.80368 0.77266 1.20125 1.22732 1.18265 1.22282 0.98188 0.95592 0.98395 0.90331 1.21395 0.96788 0.91570 0.89676 1.22263 0.75706 0.98075 0.82433 1.92993 1.89856 1.82135 1.52536 1.92993 1.32720 1.97403 1.96657 0.91068 0.88468 0.88269 0.93247 0.88820 0.91513 0.87574 0.87785 0.88614 0.90410 0.91898 0.92947 0.80335 0.93468 0.92716 0.90625 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 7.68 71.98 0.55 -0.86 16 2 C -0.12 -2.06 0.46 -52.93 -0.02 -2.08 16 3 C -0.13 -2.42 7.53 71.98 0.54 -1.88 16 4 C 0.54 13.27 6.24 87.66 0.55 13.82 16 5 O -0.57 -20.06 16.26 -3.02 -0.05 -20.11 16 6 N -0.62 -13.25 3.42 -815.09 -2.78 -16.03 16 7 C 0.11 1.30 4.73 84.99 0.40 1.70 16 8 C -0.11 -1.74 2.77 -10.50 -0.03 -1.77 16 9 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 10 C -0.08 -1.33 6.73 31.20 0.21 -1.12 16 11 C -0.14 -3.84 6.73 32.80 0.22 -3.62 16 12 C 0.19 6.38 3.39 45.13 0.15 6.54 16 13 H 0.05 1.70 8.11 -2.39 -0.02 1.68 16 14 N -0.75 -33.34 4.93 -322.27 -1.59 -34.93 16 15 C -0.22 -12.49 10.46 84.03 0.88 -11.61 16 16 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 17 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 18 N -0.98 -63.07 13.97 21.65 0.30 -62.77 16 19 Si 0.95 45.58 27.74 68.60 1.90 47.48 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 22 H -0.26 -11.33 6.52 99.48 0.65 -10.68 16 23 C -0.12 -3.22 2.41 -10.61 -0.03 -3.24 16 24 H 0.08 2.10 7.93 -2.39 -0.02 2.09 16 25 C 0.13 3.47 6.83 85.08 0.58 4.05 16 26 C 0.27 3.94 4.13 71.98 0.30 4.24 16 27 F -0.19 -2.82 16.60 44.97 0.75 -2.08 16 28 F -0.22 -4.78 16.47 44.97 0.74 -4.04 16 29 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 30 H 0.10 0.61 8.06 -2.39 -0.02 0.59 16 31 H 0.10 0.47 4.75 -2.39 -0.01 0.46 16 32 H 0.05 1.10 7.73 -2.39 -0.02 1.08 16 33 H 0.09 1.24 7.87 -2.38 -0.02 1.23 16 34 H 0.07 1.33 8.00 -2.39 -0.02 1.31 16 35 H 0.11 0.87 6.44 -2.39 -0.02 0.85 16 36 H 0.10 0.60 5.25 -2.39 -0.01 0.58 16 37 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.70 7.98 -2.39 -0.02 1.68 16 41 H 0.36 15.78 5.53 -92.70 -0.51 15.27 16 42 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 43 H 0.05 1.81 8.05 -2.38 -0.02 1.79 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.15 1.17 5.16 -2.39 -0.01 1.16 16 Total: -1.00 -76.46 351.71 4.48 -71.98 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.44 Total: 19.62 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 4.77 Total: 0.89 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -4.07 Total: -113.74 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 1.49 Total: -6.12 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.90 Total: 47.48 kcal Total: -76.46 4.48 -71.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026351849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.092 kcal (2) G-P(sol) polarization free energy of solvation -76.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds