Wall clock time and date at job start Tue Mar 31 2020 11:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47190 * 2 1 4 4 C 1.50708 * 109.47238 * 240.00503 * 2 1 3 5 5 O 1.21279 * 119.99583 * 354.63839 * 4 2 1 6 6 N 1.34773 * 120.00330 * 174.63986 * 4 2 1 7 7 C 1.49629 * 126.06946 * 354.87863 * 6 4 2 8 8 C 1.51801 * 102.35948 * 154.25350 * 7 6 4 9 9 H 1.09005 * 111.33816 * 288.44302 * 8 7 6 10 10 C 1.51555 * 123.67670 * 151.95924 * 8 7 6 11 11 C 1.56336 * 101.81566 * 208.03793 * 10 8 7 12 12 C 1.54141 * 105.54105 * 25.05287 * 11 10 8 13 13 H 1.08995 * 110.34002 * 126.64420 * 12 11 10 14 14 N 1.46505 * 109.82879 * 248.79333 * 12 11 10 15 15 C 1.36935 * 119.99836 * 270.27227 * 14 12 11 16 16 H 1.07991 * 120.00307 * 0.02562 * 15 14 12 17 17 C 1.38813 * 120.00003 * 180.02562 * 15 14 12 18 18 N 1.31631 * 119.99778 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00319 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47019 * 60.00197 * 19 17 15 21 21 H 1.48502 * 109.47423 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47211 * 299.99911 * 19 17 15 23 23 C 1.49709 * 104.90317 * 7.58407 * 12 11 10 24 24 H 1.09000 * 108.54379 * 77.11165 * 23 12 11 25 25 C 1.49281 * 126.07353 * 175.18352 * 6 4 2 26 26 C 1.52996 * 109.47315 * 120.00799 * 2 1 3 27 27 F 1.39893 * 109.47518 * 56.71956 * 26 2 1 28 28 F 1.39908 * 109.46897 * 296.71983 * 26 2 1 29 29 H 1.08997 * 109.47156 * 299.99153 * 1 2 3 30 30 H 1.09004 * 109.47508 * 60.00001 * 1 2 3 31 31 H 1.09003 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47319 * 168.86493 * 3 2 1 33 33 H 1.08999 * 109.47819 * 288.87499 * 3 2 1 34 34 H 1.09005 * 109.47158 * 48.87277 * 3 2 1 35 35 H 1.09000 * 110.80477 * 272.59760 * 7 6 4 36 36 H 1.08999 * 110.80439 * 36.10210 * 7 6 4 37 37 H 1.09001 * 110.95785 * 326.16613 * 10 8 7 38 38 H 1.08997 * 110.96576 * 89.86950 * 10 8 7 39 39 H 1.08999 * 110.19533 * 144.50756 * 11 10 8 40 40 H 1.08999 * 110.19334 * 266.28659 * 11 10 8 41 41 H 0.97003 * 120.00015 * 90.27963 * 14 12 11 42 42 H 0.97000 * 119.99421 * 179.97438 * 18 17 15 43 43 H 1.08997 * 110.39726 * 292.41746 * 25 6 4 44 44 H 1.09000 * 110.39543 * 54.82042 * 25 6 4 45 45 H 1.08999 * 109.47399 * 176.72459 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 1.2485 -1.2554 -1.9785 6 7 3.3526 -0.7399 -1.4999 7 6 4.4237 -0.0274 -0.7357 8 6 5.6454 -0.8848 -1.0126 9 1 5.5871 -1.8392 -0.4892 10 6 7.0636 -0.3504 -1.0175 11 6 7.7701 -1.3263 -2.0138 12 6 6.6520 -1.8623 -2.9296 13 1 6.9134 -1.7083 -3.9765 14 7 6.4269 -3.2844 -2.6589 15 6 7.1337 -4.2329 -3.3487 16 1 7.8574 -3.9327 -4.0919 17 6 6.9200 -5.5804 -3.0926 18 7 6.0375 -5.9463 -2.1871 19 14 7.8847 -6.8743 -4.0330 20 1 9.3367 -6.6877 -3.7835 21 1 7.4744 -8.2266 -3.5766 22 1 7.6104 -6.7375 -5.4860 23 6 5.4405 -1.0608 -2.5676 24 1 5.5272 -0.0754 -3.0253 25 6 4.0053 -1.4841 -2.6173 26 6 2.0400 -0.7214 1.2491 27 9 1.5132 -2.0168 1.2874 28 9 1.6363 -0.0199 2.3903 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1118 1.4489 0.1985 33 1 1.8477 1.8959 -0.9724 34 1 1.5238 2.0103 0.7741 35 1 4.5633 0.9843 -1.1166 36 1 4.1948 -0.0131 0.3298 37 1 7.0929 0.6741 -1.3884 38 1 7.5086 -0.4164 -0.0247 39 1 8.5200 -0.7914 -2.5964 40 1 8.2336 -2.1491 -1.4695 41 1 5.7770 -3.5540 -1.9911 42 1 5.8879 -6.8879 -2.0084 43 1 3.9205 -2.5591 -2.4584 44 1 3.5595 -1.2040 -3.5717 45 1 3.1284 -0.7725 1.2202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026351850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:11 Heat of formation + Delta-G solvation = -105.657864 kcal Electronic energy + Delta-G solvation = -28542.190513 eV Core-core repulsion = 24424.178256 eV Total energy + Delta-G solvation = -4118.012257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.17035 -47.11279 -40.85871 -39.09118 -35.58088 -35.17907 -33.33462 -30.89125 -29.69140 -28.62794 -27.51325 -26.71039 -25.52691 -24.08848 -23.27919 -21.55608 -20.19411 -19.29819 -18.80920 -17.79402 -17.54417 -17.35474 -17.15853 -16.10629 -15.88749 -15.05651 -14.88593 -14.45730 -14.43910 -13.98818 -13.80029 -13.69555 -13.56307 -13.47024 -13.10333 -12.96098 -12.80147 -12.68476 -12.55243 -12.30410 -12.08990 -11.86849 -11.56546 -11.47976 -11.25258 -11.04322 -10.86185 -10.74537 -10.68591 -10.52083 -10.32021 -10.13416 -9.85315 -9.64389 -9.58960 -8.93917 -8.63691 -7.00258 -5.78659 -3.08329 2.43348 2.74831 3.42882 3.47747 3.48942 3.54342 3.86182 3.90689 4.13950 4.22934 4.57298 4.60348 4.72326 4.86092 4.87175 5.06477 5.16194 5.21527 5.24229 5.32694 5.40093 5.51366 5.55396 5.55934 5.57421 5.69836 5.75304 5.77596 5.86295 5.93309 6.02155 6.09832 6.16522 6.22650 6.31662 6.36823 6.48939 6.60130 6.76297 7.01087 7.45525 7.68220 8.07927 8.39242 9.50688 10.06343 10.40832 11.43520 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.003920 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.393429 B = 7140.617510 C = 7761.413501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C -0.150 4.150 4 C 0.540 3.460 5 O -0.522 6.522 6 N -0.621 5.621 7 C 0.109 3.891 8 C -0.130 4.130 9 H 0.096 0.904 10 C -0.098 4.098 11 C -0.144 4.144 12 C 0.195 3.805 13 H 0.056 0.944 14 N -0.719 5.719 15 C -0.243 4.243 16 H 0.070 0.930 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.119 4.119 24 H 0.070 0.930 25 C 0.133 3.867 26 C 0.269 3.731 27 F -0.193 7.193 28 F -0.198 7.198 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 18.341 6.848 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 C -0.208 4.208 4 C 0.326 3.674 5 O -0.397 6.397 6 N -0.356 5.356 7 C -0.013 4.013 8 C -0.149 4.149 9 H 0.114 0.886 10 C -0.136 4.136 11 C -0.184 4.184 12 C 0.084 3.916 13 H 0.074 0.926 14 N -0.361 5.361 15 C -0.374 4.374 16 H 0.088 0.912 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.139 4.139 24 H 0.088 0.912 25 C 0.012 3.988 26 C 0.215 3.785 27 F -0.174 7.174 28 F -0.179 7.179 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.291 17.896 6.356 19.715 hybrid contribution 0.316 -0.915 -0.117 0.975 sum -4.975 16.981 6.239 18.763 Atomic orbital electron populations 1.21675 0.89989 1.04242 1.02973 1.21905 1.00588 0.98067 0.92810 1.22071 1.02468 0.92090 1.04129 1.19553 0.80974 0.80424 0.86449 1.90732 1.54292 1.45169 1.49503 1.49843 1.05055 1.49373 1.31379 1.22163 0.87541 0.96050 0.95515 1.22740 0.93761 1.00381 0.97986 0.88610 1.21828 0.93220 0.98682 0.99888 1.23569 0.98927 0.98304 0.97639 1.19699 0.89839 0.85323 0.96756 0.92628 1.42443 1.48127 0.98614 1.46898 1.19185 1.16158 0.86610 1.15468 0.91190 1.24734 0.99466 0.97082 0.99362 1.69647 1.36853 1.15858 1.35572 0.86298 0.79413 0.81230 0.79393 1.21316 1.21744 1.21270 1.22049 0.94366 1.00977 0.96490 0.91187 1.20984 0.91314 0.97785 0.88688 1.21990 0.98212 0.75594 0.82668 1.93038 1.88921 1.38834 1.96601 1.92978 1.92875 1.79011 1.53082 0.91244 0.90820 0.90778 0.90644 0.90702 0.90417 0.90302 0.90957 0.91929 0.91967 0.92750 0.90343 0.78139 0.93391 0.89490 0.91085 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 7.51 37.16 0.28 -1.19 16 2 C -0.13 -1.47 0.46 -155.66 -0.07 -1.54 16 3 C -0.15 -1.20 7.68 37.15 0.29 -0.92 16 4 C 0.54 8.09 6.37 -10.98 -0.07 8.02 16 5 O -0.52 -9.94 16.35 5.56 0.09 -9.85 16 6 N -0.62 -8.65 3.42 -171.41 -0.59 -9.23 16 7 C 0.11 1.14 4.52 -2.91 -0.01 1.13 16 8 C -0.13 -1.67 3.04 -89.32 -0.27 -1.94 16 9 H 0.10 1.50 7.74 -51.93 -0.40 1.10 16 10 C -0.10 -1.16 6.62 -25.67 -0.17 -1.33 16 11 C -0.14 -2.20 6.68 -24.34 -0.16 -2.37 16 12 C 0.20 3.47 3.38 -68.96 -0.23 3.24 16 13 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 14 N -0.72 -16.73 4.74 -54.43 -0.26 -16.99 16 15 C -0.24 -6.45 9.96 -15.06 -0.15 -6.60 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.28 5.50 -17.42 -0.10 -0.38 16 18 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 19 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.12 -1.75 2.32 -91.23 -0.21 -1.96 16 24 H 0.07 0.90 8.00 -51.93 -0.42 0.48 16 25 C 0.13 2.16 6.68 -4.13 -0.03 2.14 16 26 C 0.27 3.13 4.11 37.16 0.15 3.28 16 27 F -0.19 -2.89 16.48 2.25 0.04 -2.86 16 28 F -0.20 -2.21 16.52 2.25 0.04 -2.17 16 29 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.97 7.62 -51.93 -0.40 0.58 16 32 H 0.07 0.51 4.81 -51.93 -0.25 0.26 16 33 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.08 0.53 8.01 -51.93 -0.42 0.11 16 35 H 0.08 0.67 7.74 -51.93 -0.40 0.26 16 36 H 0.07 0.62 4.19 -51.93 -0.22 0.40 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16 41 H 0.38 9.64 6.59 -40.82 -0.27 9.37 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.09 1.73 7.22 -51.93 -0.37 1.36 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.12 1.15 5.22 -51.93 -0.27 0.88 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -31.48 352.25 -7.16 -38.64 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.73 Total: 7.48 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.76 Total: -0.41 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.12 Total: -53.18 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.07 Total: -5.02 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.48 -7.16 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026351850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.019 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds