Wall clock time and date at job start Tue Mar 31 2020 11:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47190 * 2 1 4 4 C 1.50708 * 109.47238 * 240.00503 * 2 1 3 5 5 O 1.21279 * 119.99583 * 354.63839 * 4 2 1 6 6 N 1.34773 * 120.00330 * 174.63986 * 4 2 1 7 7 C 1.49629 * 126.06946 * 354.87863 * 6 4 2 8 8 C 1.51801 * 102.35948 * 154.25350 * 7 6 4 9 9 H 1.09005 * 111.33816 * 288.44302 * 8 7 6 10 10 C 1.51555 * 123.67670 * 151.95924 * 8 7 6 11 11 C 1.56336 * 101.81566 * 208.03793 * 10 8 7 12 12 C 1.54141 * 105.54105 * 25.05287 * 11 10 8 13 13 H 1.08995 * 110.34002 * 126.64420 * 12 11 10 14 14 N 1.46505 * 109.82879 * 248.79333 * 12 11 10 15 15 C 1.36935 * 119.99836 * 270.27227 * 14 12 11 16 16 H 1.07991 * 120.00307 * 0.02562 * 15 14 12 17 17 C 1.38813 * 120.00003 * 180.02562 * 15 14 12 18 18 N 1.31631 * 119.99778 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00319 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47019 * 60.00197 * 19 17 15 21 21 H 1.48502 * 109.47423 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47211 * 299.99911 * 19 17 15 23 23 C 1.49709 * 104.90317 * 7.58407 * 12 11 10 24 24 H 1.09000 * 108.54379 * 77.11165 * 23 12 11 25 25 C 1.49281 * 126.07353 * 175.18352 * 6 4 2 26 26 C 1.52996 * 109.47315 * 120.00799 * 2 1 3 27 27 F 1.39893 * 109.47518 * 56.71956 * 26 2 1 28 28 F 1.39908 * 109.46897 * 296.71983 * 26 2 1 29 29 H 1.08997 * 109.47156 * 299.99153 * 1 2 3 30 30 H 1.09004 * 109.47508 * 60.00001 * 1 2 3 31 31 H 1.09003 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47319 * 168.86493 * 3 2 1 33 33 H 1.08999 * 109.47819 * 288.87499 * 3 2 1 34 34 H 1.09005 * 109.47158 * 48.87277 * 3 2 1 35 35 H 1.09000 * 110.80477 * 272.59760 * 7 6 4 36 36 H 1.08999 * 110.80439 * 36.10210 * 7 6 4 37 37 H 1.09001 * 110.95785 * 326.16613 * 10 8 7 38 38 H 1.08997 * 110.96576 * 89.86950 * 10 8 7 39 39 H 1.08999 * 110.19533 * 144.50756 * 11 10 8 40 40 H 1.08999 * 110.19334 * 266.28659 * 11 10 8 41 41 H 0.97003 * 120.00015 * 90.27963 * 14 12 11 42 42 H 0.97000 * 119.99421 * 179.97438 * 18 17 15 43 43 H 1.08997 * 110.39726 * 292.41746 * 25 6 4 44 44 H 1.09000 * 110.39543 * 54.82042 * 25 6 4 45 45 H 1.08999 * 109.47399 * 176.72459 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 1.2485 -1.2554 -1.9785 6 7 3.3526 -0.7399 -1.4999 7 6 4.4237 -0.0274 -0.7357 8 6 5.6454 -0.8848 -1.0126 9 1 5.5871 -1.8392 -0.4892 10 6 7.0636 -0.3504 -1.0175 11 6 7.7701 -1.3263 -2.0138 12 6 6.6520 -1.8623 -2.9296 13 1 6.9134 -1.7083 -3.9765 14 7 6.4269 -3.2844 -2.6589 15 6 7.1337 -4.2329 -3.3487 16 1 7.8574 -3.9327 -4.0919 17 6 6.9200 -5.5804 -3.0926 18 7 6.0375 -5.9463 -2.1871 19 14 7.8847 -6.8743 -4.0330 20 1 9.3367 -6.6877 -3.7835 21 1 7.4744 -8.2266 -3.5766 22 1 7.6104 -6.7375 -5.4860 23 6 5.4405 -1.0608 -2.5676 24 1 5.5272 -0.0754 -3.0253 25 6 4.0053 -1.4841 -2.6173 26 6 2.0400 -0.7214 1.2491 27 9 1.5132 -2.0168 1.2874 28 9 1.6363 -0.0199 2.3903 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1118 1.4489 0.1985 33 1 1.8477 1.8959 -0.9724 34 1 1.5238 2.0103 0.7741 35 1 4.5633 0.9843 -1.1166 36 1 4.1948 -0.0131 0.3298 37 1 7.0929 0.6741 -1.3884 38 1 7.5086 -0.4164 -0.0247 39 1 8.5200 -0.7914 -2.5964 40 1 8.2336 -2.1491 -1.4695 41 1 5.7770 -3.5540 -1.9911 42 1 5.8879 -6.8879 -2.0084 43 1 3.9205 -2.5591 -2.4584 44 1 3.5595 -1.2040 -3.5717 45 1 3.1284 -0.7725 1.2202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026351850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:10 Heat of formation + Delta-G solvation = -125.869220 kcal Electronic energy + Delta-G solvation = -28543.066943 eV Core-core repulsion = 24424.178256 eV Total energy + Delta-G solvation = -4118.888687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.14434 -48.10471 -42.00936 -40.29118 -36.88674 -36.27613 -35.02873 -32.57163 -30.93399 -29.94614 -28.37485 -27.56572 -26.91657 -25.26211 -25.08076 -22.62034 -21.23172 -20.41952 -20.10055 -19.40415 -18.61000 -18.58582 -18.17206 -17.34169 -16.99858 -16.65549 -15.98877 -15.84860 -15.82308 -15.28880 -14.97181 -14.92223 -14.63246 -14.48005 -14.46194 -14.04455 -13.93847 -13.72078 -13.39447 -13.26268 -13.15230 -13.09599 -12.94543 -12.81262 -12.62261 -12.48291 -12.27332 -12.17963 -12.07501 -11.87296 -11.61004 -11.48153 -11.35468 -11.01920 -10.89337 -10.81308 -9.82446 -8.96971 -7.92554 -5.19646 1.30013 1.46339 1.48730 1.54665 1.64084 2.57249 2.62063 2.90468 2.98180 3.08137 3.33924 3.42057 3.71071 3.73866 3.86874 3.95850 4.01419 4.08689 4.18898 4.26809 4.39844 4.48582 4.60416 4.61436 4.66603 4.68526 4.72371 4.76037 4.77928 4.87652 4.94705 5.00828 5.08141 5.11725 5.14618 5.21752 5.27142 5.40944 5.47432 5.55042 5.72467 6.29770 6.34795 6.91984 7.35917 8.14792 8.35237 9.30784 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.003920 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.393429 B = 7140.617510 C = 7761.413501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C -0.147 4.147 4 C 0.533 3.467 5 O -0.575 6.575 6 N -0.619 5.619 7 C 0.111 3.889 8 C -0.118 4.118 9 H 0.058 0.942 10 C -0.081 4.081 11 C -0.139 4.139 12 C 0.182 3.818 13 H 0.049 0.951 14 N -0.732 5.732 15 C -0.233 4.233 16 H 0.077 0.923 17 C -0.077 4.077 18 N -0.973 5.973 19 Si 0.967 3.033 20 H -0.276 1.276 21 H -0.301 1.301 22 H -0.280 1.280 23 C -0.121 4.121 24 H 0.107 0.893 25 C 0.136 3.864 26 C 0.265 3.735 27 F -0.218 7.218 28 F -0.191 7.191 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.371 0.629 42 H 0.247 0.753 43 H 0.036 0.964 44 H 0.064 0.936 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 22.303 7.605 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 C -0.204 4.204 4 C 0.321 3.679 5 O -0.454 6.454 6 N -0.352 5.352 7 C -0.008 4.008 8 C -0.137 4.137 9 H 0.076 0.924 10 C -0.119 4.119 11 C -0.179 4.179 12 C 0.073 3.927 13 H 0.067 0.933 14 N -0.372 5.372 15 C -0.365 4.365 16 H 0.095 0.905 17 C -0.269 4.269 18 N -0.624 5.624 19 Si 0.797 3.203 20 H -0.202 1.202 21 H -0.228 1.228 22 H -0.207 1.207 23 C -0.141 4.141 24 H 0.125 0.875 25 C 0.014 3.986 26 C 0.212 3.788 27 F -0.200 7.200 28 F -0.172 7.172 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.203 0.797 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.868 21.938 7.115 23.385 hybrid contribution -0.111 -2.108 -0.399 2.149 sum -3.979 19.830 6.716 21.311 Atomic orbital electron populations 1.21688 0.90260 1.02762 1.04177 1.21916 1.00429 0.99846 0.90432 1.22149 1.03843 0.89124 1.05238 1.20298 0.80786 0.79780 0.87059 1.90704 1.55747 1.47445 1.51554 1.49891 1.05550 1.48915 1.30868 1.22492 0.84643 0.96838 0.96871 1.22673 0.95770 0.99626 0.95628 0.92383 1.21780 0.91111 0.99367 0.99661 1.23356 0.98359 0.98338 0.97873 1.20055 0.92588 0.82862 0.97149 0.93269 1.42642 1.47507 1.00781 1.46297 1.19616 1.15089 0.87378 1.14461 0.90472 1.25487 1.01175 0.99253 1.00998 1.69822 1.39278 1.15345 1.37966 0.85299 0.78515 0.78271 0.78229 1.20201 1.22795 1.20668 1.21907 0.92001 1.01522 0.98639 0.87486 1.20728 0.93051 0.95320 0.89484 1.22250 0.99132 0.74497 0.82963 1.92995 1.89352 1.40884 1.96742 1.92990 1.92934 1.78641 1.52631 0.88889 0.90663 0.93672 0.88602 0.90228 0.88454 0.86046 0.88403 0.87948 0.90580 0.90656 0.93839 0.79709 0.94383 0.94583 0.91783 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 7.51 71.98 0.54 -2.30 16 2 C -0.12 -2.54 0.46 -52.93 -0.02 -2.57 16 3 C -0.15 -1.69 7.68 71.98 0.55 -1.13 16 4 C 0.53 15.80 6.37 87.66 0.56 16.36 16 5 O -0.58 -22.90 16.35 -3.03 -0.05 -22.95 16 6 N -0.62 -16.50 3.42 -814.60 -2.78 -19.28 16 7 C 0.11 1.86 4.52 85.38 0.39 2.25 16 8 C -0.12 -2.72 3.04 -9.95 -0.03 -2.75 16 9 H 0.06 1.81 7.74 -2.38 -0.02 1.79 16 10 C -0.08 -1.56 6.62 31.28 0.21 -1.35 16 11 C -0.14 -3.98 6.68 32.14 0.21 -3.76 16 12 C 0.18 6.40 3.38 44.32 0.15 6.55 16 13 H 0.05 1.77 8.09 -2.39 -0.02 1.75 16 14 N -0.73 -35.25 4.74 -326.13 -1.55 -36.80 16 15 C -0.23 -12.67 9.96 84.03 0.84 -11.84 16 16 H 0.08 3.99 7.83 -2.92 -0.02 3.97 16 17 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 18 N -0.97 -60.63 13.06 21.65 0.28 -60.34 16 19 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 C -0.12 -3.38 2.32 -11.19 -0.03 -3.40 16 24 H 0.11 2.28 8.00 -2.39 -0.02 2.27 16 25 C 0.14 4.53 6.68 84.79 0.57 5.10 16 26 C 0.27 5.68 4.11 71.98 0.30 5.97 16 27 F -0.22 -6.64 16.48 44.97 0.74 -5.90 16 28 F -0.19 -3.70 16.52 44.97 0.74 -2.95 16 29 H 0.09 1.53 7.89 -2.39 -0.02 1.51 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.22 7.62 -2.39 -0.02 1.21 16 32 H 0.10 0.70 4.81 -2.39 -0.01 0.69 16 33 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 34 H 0.10 0.82 8.01 -2.38 -0.02 0.80 16 35 H 0.12 1.18 7.74 -2.39 -0.02 1.16 16 36 H 0.10 1.19 4.19 -2.39 -0.01 1.18 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.55 7.93 -2.39 -0.02 1.53 16 41 H 0.37 19.73 6.59 -92.71 -0.61 19.12 16 42 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.04 1.56 7.22 -2.39 -0.02 1.54 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.14 2.31 5.22 -2.39 -0.01 2.30 16 Total: -1.00 -75.25 352.25 4.51 -70.74 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.40 Total: 25.75 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 4.69 Total: 3.15 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -4.05 Total: -116.42 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 9 Polarization: -10.33 SS G_CDS: 1.48 Total: -8.85 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.25 4.51 -70.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026351850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.127 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds