Wall clock time and date at job start Tue Mar 31 2020 11:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47463 * 2 1 4 4 C 1.50696 * 109.47292 * 119.99964 * 2 1 3 5 5 O 1.21280 * 119.99968 * 115.29919 * 4 2 1 6 6 N 1.34782 * 120.00255 * 295.29930 * 4 2 1 7 7 C 1.47216 * 126.69815 * 355.13555 * 6 4 2 8 8 C 1.53773 * 106.37701 * 148.68705 * 7 6 4 9 9 H 1.09009 * 111.70965 * 256.37654 * 8 7 6 10 10 C 1.54317 * 109.06202 * 132.42743 * 8 7 6 11 11 C 1.55063 * 103.93564 * 222.03063 * 10 8 7 12 12 C 1.55056 * 102.10826 * 40.05396 * 11 10 8 13 13 H 1.09002 * 110.53237 * 78.70154 * 12 11 10 14 14 N 1.46497 * 110.53396 * 201.32782 * 12 11 10 15 15 C 1.36935 * 120.00214 * 273.55053 * 14 12 11 16 16 H 1.08001 * 120.00032 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99942 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00124 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00061 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47118 * 270.00105 * 19 17 15 21 21 H 1.48497 * 109.47227 * 150.00090 * 19 17 15 22 22 H 1.48503 * 109.46895 * 29.99916 * 19 17 15 23 23 C 1.54322 * 103.94048 * 319.94463 * 12 11 10 24 24 H 1.08997 * 111.69062 * 262.79633 * 23 12 11 25 25 C 1.47211 * 126.70203 * 175.09522 * 6 4 2 26 26 C 1.53006 * 109.47060 * 239.99806 * 2 1 3 27 27 F 1.39889 * 109.47075 * 300.00272 * 26 2 1 28 28 F 1.39902 * 109.46584 * 60.00312 * 26 2 1 29 29 H 1.09001 * 109.47076 * 293.44030 * 1 2 3 30 30 H 1.08995 * 109.47530 * 53.43936 * 1 2 3 31 31 H 1.08996 * 109.47234 * 173.44336 * 1 2 3 32 32 H 1.08997 * 109.47578 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.47061 * 300.00517 * 3 2 1 34 34 H 1.09002 * 109.47079 * 59.99866 * 3 2 1 35 35 H 1.09002 * 110.07010 * 29.45579 * 7 6 4 36 36 H 1.08995 * 110.11837 * 267.94213 * 7 6 4 37 37 H 1.09001 * 110.53727 * 103.41869 * 10 8 7 38 38 H 1.08999 * 110.65430 * 340.70264 * 10 8 7 39 39 H 1.08999 * 110.90167 * 281.85297 * 11 10 8 40 40 H 1.08995 * 110.92989 * 158.27416 * 11 10 8 41 41 H 0.97002 * 119.99831 * 93.54630 * 14 12 11 42 42 H 0.96998 * 119.99820 * 359.97438 * 18 17 15 43 43 H 1.09004 * 110.07527 * 330.54282 * 25 6 4 44 44 H 1.09001 * 110.07366 * 92.02930 * 25 6 4 45 45 H 1.09001 * 109.47035 * 179.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6577 -1.7438 1.1212 6 7 1.7867 -0.1973 2.4523 7 6 1.1353 1.0884 2.7520 8 6 0.3896 0.8968 4.0831 9 1 -0.6836 0.7807 3.9310 10 6 0.7084 2.0849 5.0149 11 6 0.9229 1.4248 6.4015 12 6 1.7111 0.1416 6.0325 13 1 2.7604 0.3759 5.8527 14 7 1.5844 -0.8619 7.0922 15 6 2.4457 -0.8461 8.1567 16 1 3.2187 -0.0940 8.2148 17 6 2.3253 -1.7966 9.1611 18 7 1.3836 -2.7134 9.0901 19 14 3.5006 -1.7755 10.6129 20 1 4.6857 -2.6149 10.3026 21 1 2.8134 -2.3141 11.8140 22 1 3.9372 -0.3807 10.8760 23 6 1.0335 -0.3511 4.7365 24 1 0.2962 -1.1282 4.9378 25 6 2.1168 -0.8136 3.7479 26 6 2.0400 -0.7213 -1.2493 27 9 1.5736 -2.0402 -1.2492 28 9 1.5736 -0.0617 -2.3915 29 1 -0.3633 0.4088 0.9429 30 1 -0.3634 0.6121 -0.8254 31 1 -0.3633 -1.0209 -0.1173 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.4298 1.3435 1.9612 36 1 1.8843 1.8738 2.8524 37 1 -0.1302 2.7804 5.0482 38 1 1.6148 2.5957 4.6902 39 1 -0.0315 1.1752 6.8652 40 1 1.5127 2.0699 7.0527 41 1 0.8904 -1.5375 7.0399 42 1 0.7735 -2.7246 8.3360 43 1 2.1036 -1.8999 3.6597 44 1 3.0982 -0.4776 4.0828 45 1 3.1300 -0.7209 -1.2495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026351851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:15 Heat of formation + Delta-G solvation = -124.542813 kcal Electronic energy + Delta-G solvation = -28008.147284 eV Core-core repulsion = 23889.316115 eV Total energy + Delta-G solvation = -4118.831169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.18844 -47.12301 -40.86435 -38.87335 -35.86598 -35.22122 -33.65864 -31.08927 -29.54550 -28.52345 -27.94936 -26.67175 -25.05092 -24.42975 -23.02885 -21.74986 -20.45258 -19.41419 -19.30814 -17.80654 -17.45497 -17.34975 -16.89794 -16.47810 -15.99778 -15.36834 -15.06551 -14.68431 -14.44778 -14.06764 -13.90534 -13.81144 -13.63305 -13.47853 -13.35519 -13.09641 -13.01382 -12.68296 -12.49574 -12.48923 -12.29505 -11.94713 -11.67944 -11.65038 -11.16822 -11.07030 -10.88674 -10.70179 -10.56685 -10.48058 -10.40407 -10.22199 -10.02700 -9.84964 -9.19606 -8.91437 -8.80398 -7.06127 -6.12918 -3.13448 2.36477 2.65439 3.41766 3.50297 3.54910 3.68641 3.84592 3.97947 4.11233 4.37373 4.42360 4.62897 4.64201 4.70597 4.77080 4.89074 5.01126 5.10159 5.18585 5.21403 5.27720 5.30479 5.35135 5.45270 5.56698 5.60294 5.63804 5.67468 5.77629 5.79729 5.83017 5.90599 6.04341 6.08851 6.17245 6.24566 6.36859 6.49453 6.66804 6.89698 7.37045 7.78396 7.91222 8.72685 9.18912 10.05231 10.19409 11.35364 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.003093 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.624225 B = 9050.935319 C = 9706.593666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C -0.157 4.157 4 C 0.542 3.458 5 O -0.530 6.530 6 N -0.609 5.609 7 C 0.093 3.907 8 C -0.100 4.100 9 H 0.087 0.913 10 C -0.117 4.117 11 C -0.142 4.142 12 C 0.190 3.810 13 H 0.057 0.943 14 N -0.732 5.732 15 C -0.332 4.332 16 H 0.065 0.935 17 C -0.044 4.044 18 N -0.943 5.943 19 Si 1.081 2.919 20 H -0.295 1.295 21 H -0.288 1.288 22 H -0.295 1.295 23 C -0.106 4.106 24 H 0.088 0.912 25 C 0.117 3.883 26 C 0.287 3.713 27 F -0.191 7.191 28 F -0.202 7.202 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.367 0.633 42 H 0.255 0.745 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 12.308 -19.981 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.135 4.135 3 C -0.214 4.214 4 C 0.329 3.671 5 O -0.406 6.406 6 N -0.342 5.342 7 C -0.030 4.030 8 C -0.120 4.120 9 H 0.105 0.895 10 C -0.155 4.155 11 C -0.183 4.183 12 C 0.079 3.921 13 H 0.075 0.925 14 N -0.374 5.374 15 C -0.463 4.463 16 H 0.083 0.917 17 C -0.241 4.241 18 N -0.588 5.588 19 Si 0.912 3.088 20 H -0.223 1.223 21 H -0.214 1.214 22 H -0.222 1.222 23 C -0.126 4.126 24 H 0.106 0.894 25 C -0.005 4.005 26 C 0.233 3.767 27 F -0.172 7.172 28 F -0.184 7.184 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.269 11.061 -18.685 21.751 hybrid contribution -0.730 0.588 -1.505 1.773 sum -1.999 11.648 -20.190 23.395 Atomic orbital electron populations 1.21992 0.90516 1.04218 1.04075 1.21807 1.00042 0.98430 0.93185 1.22156 1.02266 0.92071 1.04889 1.19550 0.79872 0.84673 0.82984 1.90783 1.40224 1.23772 1.85816 1.48475 1.59167 1.21212 1.05327 1.22727 0.96568 0.85897 0.97773 1.22592 0.99591 0.96242 0.93582 0.89489 1.22506 1.00816 0.95916 0.96268 1.23279 1.01344 0.98813 0.94834 1.21173 0.96236 0.88665 0.86023 0.92535 1.42450 1.38444 1.33606 1.22874 1.20042 1.11101 1.14444 1.00727 0.91734 1.25755 1.02131 0.94675 1.01589 1.70855 1.19255 1.35698 1.33014 0.83214 0.74800 0.74951 0.75804 1.22295 1.21405 1.22160 1.22885 0.96922 0.97000 0.95798 0.89375 1.22202 0.98413 0.99288 0.80600 1.21437 0.98151 0.75218 0.81896 1.93010 1.90778 1.36826 1.96549 1.92965 1.91239 1.81059 1.53095 0.90253 0.90404 0.91005 0.91310 0.90299 0.89585 0.89890 0.90653 0.92033 0.91605 0.91660 0.92029 0.79943 0.93343 0.90288 0.90749 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.02 37.16 0.30 -0.99 16 2 C -0.13 -1.27 0.46 -155.66 -0.07 -1.34 16 3 C -0.16 -1.08 8.04 37.16 0.30 -0.78 16 4 C 0.54 7.25 6.51 -10.98 -0.07 7.18 16 5 O -0.53 -9.21 15.61 5.56 0.09 -9.13 16 6 N -0.61 -7.64 3.31 -171.59 -0.57 -8.21 16 7 C 0.09 0.88 4.37 -3.25 -0.01 0.86 16 8 C -0.10 -1.13 3.91 -88.53 -0.35 -1.47 16 9 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 10 C -0.12 -1.33 6.35 -24.95 -0.16 -1.48 16 11 C -0.14 -2.27 6.60 -24.55 -0.16 -2.43 16 12 C 0.19 3.47 3.01 -66.15 -0.20 3.27 16 13 H 0.06 1.08 7.17 -51.93 -0.37 0.71 16 14 N -0.73 -17.45 5.23 -51.71 -0.27 -17.72 16 15 C -0.33 -9.05 9.97 -15.06 -0.15 -9.20 16 16 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 17 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 18 N -0.94 -28.81 13.70 55.49 0.76 -28.05 16 19 Si 1.08 25.70 29.92 -169.99 -5.09 20.61 16 20 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.11 -1.58 3.60 -88.53 -0.32 -1.90 16 24 H 0.09 1.43 7.78 -51.93 -0.40 1.02 16 25 C 0.12 1.76 6.52 -3.25 -0.02 1.74 16 26 C 0.29 3.03 3.82 37.16 0.14 3.17 16 27 F -0.19 -2.60 15.68 2.25 0.04 -2.56 16 28 F -0.20 -2.03 16.42 2.25 0.04 -1.99 16 29 H 0.08 0.61 5.30 -51.93 -0.28 0.33 16 30 H 0.08 0.55 7.98 -51.93 -0.41 0.13 16 31 H 0.07 0.72 7.62 -51.93 -0.40 0.32 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.45 7.80 -51.92 -0.41 0.04 16 34 H 0.09 0.52 4.41 -51.93 -0.23 0.29 16 35 H 0.08 0.60 4.02 -51.93 -0.21 0.39 16 36 H 0.08 0.64 6.71 -51.93 -0.35 0.29 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.68 7.19 -51.93 -0.37 0.31 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.37 9.11 6.40 -40.82 -0.26 8.85 16 42 H 0.26 7.66 6.77 -40.82 -0.28 7.38 16 43 H 0.08 1.35 7.97 -51.93 -0.41 0.93 16 44 H 0.07 1.17 7.13 -51.93 -0.37 0.80 16 45 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -32.82 348.80 -7.11 -39.93 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.49 Total: 6.58 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -0.87 Total: -4.73 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.08 Total: -53.98 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.07 Total: -4.55 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.09 Total: 20.61 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.82 -7.11 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026351851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.612 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds