Wall clock time and date at job start Tue Mar 31 2020 11:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 119.99436 * 2 1 4 4 H 1.08009 * 119.99792 * 145.65058 * 3 2 1 5 5 C 1.38807 * 120.00463 * 325.64644 * 3 2 1 6 6 N 1.31622 * 120.00136 * 155.03414 * 5 3 2 7 7 Si 1.86808 * 120.00065 * 335.02817 * 5 3 2 8 8 H 1.48499 * 109.46628 * 95.15015 * 7 5 3 9 9 H 1.48499 * 109.47361 * 215.15031 * 7 5 3 10 10 H 1.48501 * 109.46970 * 335.15115 * 7 5 3 11 11 C 1.46494 * 119.99884 * 179.97438 * 2 1 3 12 12 H 1.09006 * 109.52090 * 179.97438 * 11 2 1 13 13 C 1.53035 * 109.49974 * 59.83964 * 11 2 1 14 14 C 1.53039 * 109.53792 * 178.68032 * 13 11 2 15 15 C 1.52757 * 109.38438 * 61.24198 * 14 13 11 16 16 N 1.46933 * 109.00715 * 305.58573 * 15 14 13 17 17 C 1.34773 * 120.63221 * 233.58560 * 16 15 14 18 18 O 1.21275 * 120.00201 * 184.93585 * 17 16 15 19 19 C 1.50707 * 120.00077 * 4.93378 * 17 16 15 20 20 C 1.53001 * 112.84921 * 289.43292 * 19 17 16 21 21 C 1.53789 * 113.61161 * 60.62523 * 19 17 16 22 22 C 1.53780 * 87.07748 * 89.20209 * 21 19 17 23 23 F 1.39902 * 113.61149 * 139.98408 * 22 21 19 24 24 F 1.39903 * 113.61457 * 270.79678 * 22 21 19 25 25 C 1.53778 * 87.17757 * 25.38617 * 22 21 19 26 26 C 1.46921 * 118.73710 * 53.30956 * 16 15 14 27 27 H 1.09005 * 109.47258 * 265.02022 * 1 2 3 28 28 H 1.08996 * 109.47454 * 25.02006 * 1 2 3 29 29 H 1.09001 * 109.46938 * 145.02133 * 1 2 3 30 30 H 0.97004 * 119.99545 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.45986 * 298.70387 * 13 11 2 32 32 H 1.09004 * 109.46192 * 58.67736 * 13 11 2 33 33 H 1.09003 * 109.49748 * 181.31733 * 14 13 11 34 34 H 1.09000 * 109.50180 * 301.37618 * 14 13 11 35 35 H 1.08998 * 109.50938 * 185.70869 * 15 14 13 36 36 H 1.08997 * 109.43553 * 65.41929 * 15 14 13 37 37 H 1.09002 * 109.46634 * 185.76406 * 20 19 17 38 38 H 1.09002 * 109.46828 * 305.76365 * 20 19 17 39 39 H 1.08998 * 109.47008 * 65.76650 * 20 19 17 40 40 H 1.09003 * 113.61493 * 334.65086 * 21 19 17 41 41 H 1.09000 * 113.61350 * 203.74750 * 21 19 17 42 42 H 1.09005 * 113.61097 * 89.15715 * 25 22 21 43 43 H 1.08991 * 113.62069 * 220.06116 * 25 22 21 44 44 H 1.09000 * 109.58714 * 66.43166 * 26 16 15 45 45 H 1.09000 * 109.58630 * 186.86011 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0884 1.2676 0.5278 5 6 1.6371 2.2832 -0.6783 6 7 1.9759 3.5010 -0.3111 7 14 0.4668 2.0317 -2.1125 8 1 -0.9345 2.1261 -1.6301 9 1 0.7088 3.0778 -3.1383 10 1 0.6958 0.6911 -2.7089 11 6 2.1975 -1.2687 0.0006 12 1 3.2694 -1.0705 0.0000 13 6 1.8252 -2.0740 -1.2464 14 6 2.6146 -3.3850 -1.2635 15 6 2.2542 -4.2100 -0.0293 16 7 2.4683 -3.3919 1.1723 17 6 3.2419 -3.8414 2.1802 18 8 3.3392 -3.1979 3.2035 19 6 3.9862 -5.1439 2.0356 20 6 3.0610 -6.3623 2.0564 21 6 4.9911 -5.1532 0.8715 22 6 6.0299 -4.6112 1.8675 23 9 7.3016 -5.1733 1.7122 24 9 6.0588 -3.2145 1.9425 25 6 5.1963 -5.2706 2.9789 26 6 1.8279 -2.0720 1.2516 27 1 -0.3634 -0.0892 1.0238 28 1 -0.3634 0.9312 -0.4346 29 1 -0.3633 -0.8420 -0.5891 30 1 1.6174 4.2677 -0.7850 31 1 0.7575 -2.2931 -1.2318 32 1 2.0649 -1.4945 -2.1379 33 1 2.3664 -3.9474 -2.1636 34 1 3.6825 -3.1669 -1.2537 35 1 2.8878 -5.0958 0.0141 36 1 1.2076 -4.5091 -0.0859 37 1 3.6597 -7.2732 2.0516 38 1 2.4461 -6.3363 2.9561 39 1 2.4182 -6.3454 1.1763 40 1 4.7427 -4.4522 0.0747 41 1 5.2211 -6.1523 0.5013 42 1 5.4825 -6.3018 3.1858 43 1 5.1134 -4.6642 3.8807 44 1 0.7458 -2.1932 1.3015 45 1 2.1803 -1.5476 2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027647718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:52 Heat of formation + Delta-G solvation = -77.381470 kcal Electronic energy + Delta-G solvation = -28841.285333 eV Core-core repulsion = 24724.499233 eV Total energy + Delta-G solvation = -4116.786100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.88847 -47.21261 -40.90062 -38.26841 -36.97649 -35.33919 -32.41894 -31.60392 -30.29342 -29.24760 -26.61924 -26.17356 -25.80948 -23.97698 -23.21144 -21.86550 -21.25267 -19.31463 -18.49770 -17.60259 -16.91673 -16.85960 -16.80775 -16.27092 -15.92110 -15.38470 -15.09488 -14.28830 -14.24774 -14.08503 -14.05060 -13.76878 -13.56036 -13.51305 -13.40729 -12.92679 -12.84784 -12.66735 -12.57249 -12.50430 -12.27471 -12.23900 -12.17110 -11.36709 -11.28368 -11.18374 -11.03587 -10.72680 -10.62007 -10.50950 -10.38289 -10.14420 -9.96944 -9.67346 -9.54807 -8.70767 -8.36579 -6.89667 -6.00193 -3.37697 2.57486 2.94952 3.27903 3.29834 3.45513 3.49798 3.53022 3.86791 3.98278 4.09032 4.46909 4.51246 4.72934 4.88708 4.98356 5.01973 5.04023 5.08861 5.10635 5.23525 5.28639 5.32530 5.42391 5.43860 5.54445 5.56827 5.68220 5.74527 5.76180 5.83513 5.97464 6.07215 6.18887 6.29721 6.35290 6.50187 6.55038 6.70837 6.82391 6.86412 7.48808 8.00901 8.21105 8.36565 8.96007 9.69964 10.07536 11.15452 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020539 B = 0.004049 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.961173 B = 6913.800644 C = 7305.601303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.600 5.600 3 C -0.270 4.270 4 H 0.081 0.919 5 C 0.035 3.965 6 N -0.896 5.896 7 Si 0.879 3.121 8 H -0.287 1.287 9 H -0.303 1.303 10 H -0.270 1.270 11 C 0.167 3.833 12 H 0.075 0.925 13 C -0.138 4.138 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.600 5.600 17 C 0.535 3.465 18 O -0.527 6.527 19 C -0.104 4.104 20 C -0.133 4.133 21 C -0.161 4.161 22 C 0.253 3.747 23 F -0.192 7.192 24 F -0.168 7.168 25 C -0.145 4.145 26 C 0.101 3.899 27 H 0.016 0.984 28 H 0.050 0.950 29 H 0.028 0.972 30 H 0.263 0.737 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.062 0.938 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 -24.300 0.533 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.323 5.323 3 C -0.398 4.398 4 H 0.098 0.902 5 C -0.166 4.166 6 N -0.537 5.537 7 Si 0.709 3.291 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.195 1.195 11 C 0.059 3.941 12 H 0.093 0.907 13 C -0.178 4.178 14 C -0.173 4.173 15 C -0.024 4.024 16 N -0.333 5.333 17 C 0.321 3.679 18 O -0.403 6.403 19 C -0.107 4.107 20 C -0.190 4.190 21 C -0.199 4.199 22 C 0.217 3.783 23 F -0.173 7.173 24 F -0.148 7.148 25 C -0.183 4.183 26 C -0.023 4.023 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.488 -23.689 1.064 23.843 hybrid contribution -0.580 0.186 -1.046 1.210 sum 1.907 -23.503 0.019 23.581 Atomic orbital electron populations 1.21352 0.84850 0.99370 0.98135 1.44034 1.00505 1.01483 1.86304 1.18818 1.07427 0.85989 1.27586 0.90167 1.25391 0.98141 0.95038 0.97991 1.69913 1.46264 0.97605 1.39940 0.86940 0.80265 0.77516 0.84330 1.21551 1.23074 1.19487 1.20727 0.97144 0.85676 0.90580 0.90695 1.22141 0.99466 0.95118 1.01043 1.21885 1.01237 0.97356 0.96838 1.21923 1.01622 0.93969 0.84908 1.48034 1.48788 1.18940 1.17523 1.19652 0.79132 0.85673 0.83476 1.90717 1.63391 1.57870 1.28324 1.21743 0.95269 0.96046 0.97656 1.21777 0.99025 0.94646 1.03544 1.24410 0.92883 1.04779 0.97802 1.22004 0.79516 0.76464 1.00314 1.93002 1.43729 1.84113 1.96408 1.93114 1.96464 1.28343 1.96903 1.24120 0.91794 1.03496 0.98892 1.22350 0.96702 0.81200 1.02025 0.96599 0.93181 0.95306 0.92693 0.92398 0.91336 0.90998 0.91541 0.89545 0.91284 0.90905 0.91234 0.90930 0.87829 0.85938 0.86329 0.87277 0.91968 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.31 8.38 59.85 0.50 2.81 16 2 N -0.60 -14.10 2.42 -173.34 -0.42 -14.52 16 3 C -0.27 -7.60 9.84 -15.06 -0.15 -7.74 16 4 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 5 C 0.03 1.01 5.25 -17.43 -0.09 0.92 16 6 N -0.90 -27.55 13.97 55.49 0.78 -26.78 16 7 Si 0.88 22.03 25.10 -169.99 -4.27 17.76 16 8 H -0.29 -7.00 6.62 56.52 0.37 -6.63 16 9 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 C 0.17 3.23 2.75 -67.81 -0.19 3.05 16 12 H 0.07 1.60 7.89 -51.93 -0.41 1.19 16 13 C -0.14 -2.19 5.10 -26.69 -0.14 -2.33 16 14 C -0.13 -1.54 5.93 -26.84 -0.16 -1.70 16 15 C 0.10 1.01 4.67 -3.93 -0.02 0.99 16 16 N -0.60 -8.43 2.98 -173.03 -0.52 -8.95 16 17 C 0.53 7.80 5.72 -10.98 -0.06 7.73 16 18 O -0.53 -9.95 15.45 5.56 0.09 -9.86 16 19 C -0.10 -1.02 0.71 -154.75 -0.11 -1.13 16 20 C -0.13 -0.88 8.79 37.16 0.33 -0.55 16 21 C -0.16 -1.41 5.68 -25.92 -0.15 -1.56 16 22 C 0.25 2.99 3.26 -25.92 -0.08 2.91 16 23 F -0.19 -2.30 17.41 2.25 0.04 -2.26 16 24 F -0.17 -2.70 16.58 2.25 0.04 -2.66 16 25 C -0.14 -1.43 6.92 -25.83 -0.18 -1.60 16 26 C 0.10 1.76 5.78 -3.71 -0.02 1.74 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 1.18 3.29 -51.93 -0.17 1.01 16 29 H 0.03 0.53 6.47 -51.93 -0.34 0.20 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.06 0.88 6.75 -51.93 -0.35 0.53 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.79 7.28 -51.93 -0.38 0.41 16 35 H 0.09 0.65 3.50 -51.93 -0.18 0.47 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.41 5.95 -51.93 -0.31 0.10 16 40 H 0.10 0.98 5.77 -51.93 -0.30 0.68 16 41 H 0.12 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.12 0.78 8.05 -51.93 -0.42 0.36 16 43 H 0.11 1.29 7.37 -51.93 -0.38 0.91 16 44 H 0.06 1.04 7.52 -51.93 -0.39 0.65 16 45 H 0.09 1.92 7.04 -51.93 -0.37 1.55 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -33.71 343.63 -6.13 -39.84 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.53 Total: -1.29 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.52 Total: 3.53 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.16 Total: -50.24 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.08 Total: -4.92 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.27 Total: 17.76 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.71 -6.13 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027647718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.542 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds