Wall clock time and date at job start Tue Mar 31 2020 11:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36928 * 120.00024 * 2 1 4 4 H 1.08002 * 120.00349 * 143.80931 * 3 2 1 5 5 C 1.38820 * 120.00123 * 323.80913 * 3 2 1 6 6 N 1.31613 * 120.00181 * 157.22862 * 5 3 2 7 7 Si 1.86805 * 119.99693 * 337.22471 * 5 3 2 8 8 H 1.48501 * 109.47053 * 95.41133 * 7 5 3 9 9 H 1.48503 * 109.46877 * 215.41102 * 7 5 3 10 10 H 1.48503 * 109.47275 * 335.41361 * 7 5 3 11 11 C 1.46499 * 119.99583 * 179.97438 * 2 1 3 12 12 H 1.09008 * 109.49355 * 179.97438 * 11 2 1 13 13 C 1.53041 * 109.50085 * 300.06098 * 11 2 1 14 14 C 1.53043 * 109.53646 * 181.34863 * 13 11 2 15 15 C 1.53187 * 109.31454 * 298.63805 * 14 13 11 16 16 N 1.46929 * 108.77738 * 54.63719 * 15 14 13 17 17 C 1.34767 * 120.63173 * 126.40819 * 16 15 14 18 18 O 1.21289 * 120.00301 * 174.25771 * 17 16 15 19 19 C 1.50700 * 120.00333 * 354.26271 * 17 16 15 20 20 C 1.52997 * 112.85096 * 292.70384 * 19 17 16 21 21 C 1.53781 * 113.61571 * 161.39125 * 19 17 16 22 22 C 1.53777 * 87.08235 * 220.02017 * 21 19 17 23 23 F 1.39906 * 113.61871 * 270.88470 * 22 21 19 24 24 F 1.39907 * 113.69131 * 139.99367 * 22 21 19 25 25 C 1.53782 * 87.08153 * 25.43574 * 22 21 19 26 26 C 1.46923 * 118.73692 * 306.39109 * 16 15 14 27 27 H 1.09004 * 109.47068 * 266.03859 * 1 2 3 28 28 H 1.09001 * 109.47260 * 26.03558 * 1 2 3 29 29 H 1.08997 * 109.47496 * 146.03929 * 1 2 3 30 30 H 0.96999 * 120.00028 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.45939 * 301.37299 * 13 11 2 32 32 H 1.09005 * 109.45734 * 61.33577 * 13 11 2 33 33 H 1.09001 * 109.49722 * 58.59323 * 14 13 11 34 34 H 1.09002 * 109.49284 * 178.65249 * 14 13 11 35 35 H 1.09005 * 109.58612 * 174.42109 * 15 14 13 36 36 H 1.08997 * 109.59185 * 294.84916 * 15 14 13 37 37 H 1.08993 * 109.47257 * 54.16747 * 20 19 17 38 38 H 1.08998 * 109.47612 * 174.17077 * 20 19 17 39 39 H 1.09002 * 109.46852 * 294.16883 * 20 19 17 40 40 H 1.09003 * 113.61649 * 334.57321 * 21 19 17 41 41 H 1.09002 * 113.61228 * 105.47712 * 21 19 17 42 42 H 1.09003 * 113.61199 * 220.01921 * 25 22 21 43 43 H 1.08994 * 113.61364 * 89.11590 * 25 22 21 44 44 H 1.08998 * 109.58835 * 293.82048 * 26 16 15 45 45 H 1.08998 * 109.58899 * 173.39216 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0734 1.2761 0.5523 5 6 1.6565 2.2721 -0.7099 6 7 2.0195 3.4934 -0.3801 7 14 0.4777 2.0002 -2.1333 8 1 -0.9201 2.1422 -1.6525 9 1 0.7413 3.0064 -3.1933 10 1 0.6750 0.6359 -2.6857 11 6 2.1974 -1.2688 0.0006 12 1 3.2693 -1.0701 0.0000 13 6 1.8270 -2.0719 1.2495 14 6 2.6169 -3.3826 1.2680 15 6 2.2509 -4.2123 0.0334 16 7 2.4677 -3.3941 -1.1675 17 6 3.2396 -3.8455 -2.1758 18 8 3.3275 -3.2087 -3.2043 19 6 3.9936 -5.1416 -2.0255 20 6 5.1048 -5.0644 -0.9766 21 6 4.4478 -5.7488 -3.3634 22 6 4.0661 -7.1198 -2.7808 23 9 5.1087 -7.7444 -2.0878 24 9 3.4413 -7.9677 -3.7017 25 6 3.0818 -6.3699 -1.8677 26 6 1.8267 -2.0745 -1.2485 27 1 -0.3633 -0.0710 1.0253 28 1 -0.3634 0.9234 -0.4511 29 1 -0.3634 -0.8523 -0.5740 30 1 1.6751 4.2524 -0.8763 31 1 2.0672 -1.4905 2.1396 32 1 0.7594 -2.2916 1.2365 33 1 3.6847 -3.1641 1.2560 34 1 2.3704 -3.9431 2.1698 35 1 2.8819 -5.1000 -0.0105 36 1 1.2034 -4.5084 0.0895 37 1 4.6885 -4.7165 -0.0313 38 1 5.5435 -6.0526 -0.8386 39 1 5.8740 -4.3692 -1.3128 40 1 3.8321 -5.4478 -4.2110 41 1 5.5153 -5.6372 -3.5535 42 1 3.0465 -6.7597 -0.8503 43 1 2.0927 -6.2387 -2.3064 44 1 0.7447 -2.1963 -1.2969 45 1 2.1778 -1.5517 -2.1381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027647719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:56 Heat of formation + Delta-G solvation = -79.834959 kcal Electronic energy + Delta-G solvation = -28422.475258 eV Core-core repulsion = 24305.582767 eV Total energy + Delta-G solvation = -4116.892491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.15405 -47.46382 -40.87322 -38.33824 -37.06823 -35.35054 -32.43645 -31.61780 -30.15769 -29.09636 -26.73007 -26.24172 -25.88030 -24.18637 -23.44926 -21.82031 -20.92431 -19.31079 -18.70382 -18.04858 -17.04833 -16.91759 -16.84241 -16.10233 -15.64790 -15.39191 -15.25227 -14.62193 -14.34525 -14.26718 -14.15197 -13.89251 -13.77583 -13.71226 -13.34839 -12.86463 -12.74791 -12.60211 -12.51736 -12.44657 -12.29968 -12.22941 -11.99540 -11.56492 -11.37164 -11.32774 -11.08590 -10.81812 -10.67166 -10.51870 -10.44968 -10.11645 -9.99067 -9.67019 -9.60255 -8.56230 -8.50307 -6.89717 -6.03616 -3.44548 2.55503 2.93316 3.13317 3.29417 3.41926 3.47352 3.52098 3.82835 3.86434 4.05149 4.48409 4.50164 4.72082 4.74196 4.94801 5.02881 5.05080 5.07863 5.13532 5.16542 5.27682 5.33221 5.40092 5.50045 5.50934 5.59395 5.66753 5.69919 5.78407 5.84115 6.02090 6.04409 6.17692 6.27014 6.32898 6.44281 6.56538 6.67064 6.79560 6.82617 7.48316 7.98956 8.19535 8.32489 8.92292 9.66011 10.04343 11.11819 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.003645 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.368296 B = 7680.723902 C = 8143.620879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.601 5.601 3 C -0.272 4.272 4 H 0.080 0.920 5 C 0.037 3.963 6 N -0.898 5.898 7 Si 0.880 3.120 8 H -0.287 1.287 9 H -0.301 1.301 10 H -0.268 1.268 11 C 0.167 3.833 12 H 0.074 0.926 13 C -0.131 4.131 14 C -0.133 4.133 15 C 0.098 3.902 16 N -0.600 5.600 17 C 0.531 3.469 18 O -0.534 6.534 19 C -0.100 4.100 20 C -0.142 4.142 21 C -0.137 4.137 22 C 0.256 3.744 23 F -0.176 7.176 24 F -0.189 7.189 25 C -0.154 4.154 26 C 0.092 3.908 27 H 0.017 0.983 28 H 0.048 0.952 29 H 0.028 0.972 30 H 0.264 0.736 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.061 0.939 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 -22.850 0.654 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.324 5.324 3 C -0.400 4.400 4 H 0.098 0.902 5 C -0.164 4.164 6 N -0.539 5.539 7 Si 0.711 3.289 8 H -0.215 1.215 9 H -0.229 1.229 10 H -0.193 1.193 11 C 0.059 3.941 12 H 0.093 0.907 13 C -0.171 4.171 14 C -0.172 4.172 15 C -0.025 4.025 16 N -0.333 5.333 17 C 0.317 3.683 18 O -0.410 6.410 19 C -0.104 4.104 20 C -0.199 4.199 21 C -0.176 4.176 22 C 0.220 3.780 23 F -0.157 7.157 24 F -0.170 7.170 25 C -0.192 4.192 26 C -0.031 4.031 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.140 0.860 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.135 0.865 44 H 0.079 0.921 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.315 -22.314 0.067 22.434 hybrid contribution -0.757 -0.178 -0.814 1.126 sum 1.557 -22.492 -0.747 22.558 Atomic orbital electron populations 1.21337 0.84869 0.99148 0.98183 1.44073 1.00508 1.01496 1.86274 1.18791 1.08801 0.86363 1.26071 0.90205 1.25452 0.98149 0.95182 0.97608 1.69862 1.46273 0.97751 1.39986 0.86909 0.80165 0.77998 0.83869 1.21486 1.22911 1.19315 1.20780 0.97112 0.85642 0.90609 0.90740 1.22036 0.99467 0.95013 1.00552 1.21934 1.01246 0.97215 0.96766 1.21999 1.01530 0.94019 0.84923 1.48158 1.48722 1.18864 1.17579 1.19906 0.79121 0.85923 0.83314 1.90729 1.63894 1.58366 1.28014 1.21828 0.97330 0.93034 0.98161 1.21861 0.96666 1.04031 0.97295 1.24029 1.05429 0.89809 0.98289 1.21984 0.84866 0.84722 0.86475 1.92995 1.58831 1.84612 1.79261 1.93021 1.82183 1.74503 1.67248 1.24313 0.99368 0.93662 1.01852 1.22547 0.96805 0.81287 1.02466 0.96462 0.93399 0.95356 0.92609 0.91293 0.92424 0.91424 0.91023 0.89591 0.91385 0.90537 0.90283 0.90796 0.86021 0.88076 0.87742 0.86515 0.92110 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.30 8.50 59.85 0.51 2.81 16 2 N -0.60 -13.79 2.40 -173.34 -0.42 -14.20 16 3 C -0.27 -7.49 9.84 -15.06 -0.15 -7.64 16 4 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 5 C 0.04 1.06 5.28 -17.43 -0.09 0.97 16 6 N -0.90 -27.29 13.97 55.49 0.78 -26.51 16 7 Si 0.88 22.36 25.01 -169.99 -4.25 18.11 16 8 H -0.29 -7.02 6.66 56.52 0.38 -6.64 16 9 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.17 3.12 2.74 -67.81 -0.19 2.93 16 12 H 0.07 1.51 7.89 -51.92 -0.41 1.10 16 13 C -0.13 -1.92 5.15 -26.69 -0.14 -2.06 16 14 C -0.13 -1.41 5.94 -26.61 -0.16 -1.57 16 15 C 0.10 0.97 5.16 -3.71 -0.02 0.95 16 16 N -0.60 -8.32 2.97 -172.77 -0.51 -8.83 16 17 C 0.53 7.62 6.68 -10.99 -0.07 7.55 16 18 O -0.53 -9.99 15.63 5.55 0.09 -9.90 16 19 C -0.10 -1.01 0.70 -154.85 -0.11 -1.12 16 20 C -0.14 -1.21 8.64 37.16 0.32 -0.89 16 21 C -0.14 -1.35 6.68 -25.92 -0.17 -1.53 16 22 C 0.26 2.38 3.26 -25.92 -0.08 2.30 16 23 F -0.18 -1.70 15.49 2.25 0.03 -1.66 16 24 F -0.19 -2.03 17.41 2.25 0.04 -1.99 16 25 C -0.15 -1.24 5.50 -25.92 -0.14 -1.38 16 26 C 0.09 1.63 5.77 -3.71 -0.02 1.61 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 1.11 3.32 -51.93 -0.17 0.94 16 29 H 0.03 0.52 6.35 -51.93 -0.33 0.19 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.82 7.72 -51.93 -0.40 0.42 16 33 H 0.07 0.74 7.67 -51.93 -0.40 0.34 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.65 3.23 -51.93 -0.17 0.48 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.61 5.58 -51.93 -0.29 0.32 16 38 H 0.08 0.59 6.16 -51.93 -0.32 0.27 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.12 1.31 7.75 -51.93 -0.40 0.91 16 41 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.10 0.62 7.10 -51.93 -0.37 0.25 16 43 H 0.12 0.93 8.09 -51.93 -0.42 0.51 16 44 H 0.06 1.05 6.49 -51.93 -0.34 0.71 16 45 H 0.09 1.96 7.04 -51.93 -0.37 1.59 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -32.27 343.19 -6.09 -38.35 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.50 Total: -1.47 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.52 Total: 2.93 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.15 Total: -49.55 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.07 Total: -3.66 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.25 Total: 18.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.27 -6.09 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027647719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.480 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds