Wall clock time and date at job start Tue Mar 31 2020 10:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99712 * 2 1 4 4 H 1.48501 * 109.47154 * 270.00160 * 3 2 1 5 5 H 1.48503 * 109.47427 * 30.00218 * 3 2 1 6 6 H 1.48502 * 109.47312 * 150.00093 * 3 2 1 7 7 C 1.38815 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00024 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99472 * 359.97438 * 7 2 1 10 10 C 1.47418 * 125.65329 * 345.82516 * 9 7 2 11 11 C 1.54910 * 104.83343 * 204.15046 * 10 9 7 12 12 C 1.55153 * 101.58084 * 322.98864 * 11 10 9 13 13 C 1.47025 * 125.64367 * 165.85089 * 9 7 2 14 14 H 1.08997 * 110.01588 * 59.42764 * 13 9 7 15 15 C 1.53004 * 109.88158 * 298.33624 * 13 9 7 16 16 N 1.46499 * 109.46963 * 176.74477 * 15 13 9 17 17 C 1.34780 * 119.99667 * 174.96670 * 16 15 13 18 18 O 1.21273 * 120.00196 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99676 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.47292 * 60.00153 * 19 17 16 21 21 C 1.53006 * 109.47037 * 299.99966 * 19 17 16 22 22 C 1.52998 * 109.46889 * 180.02562 * 21 19 17 23 23 C 1.53002 * 109.47416 * 60.00004 * 22 21 19 24 24 C 1.53011 * 109.46998 * 300.00221 * 23 22 21 25 25 F 1.39895 * 109.46988 * 179.97438 * 24 23 22 26 26 F 1.39897 * 109.46846 * 299.99682 * 24 23 22 27 27 C 1.52998 * 109.47218 * 59.99658 * 24 23 22 28 28 H 0.97001 * 120.00242 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.36763 * 85.31170 * 10 9 7 30 30 H 1.08998 * 110.45848 * 323.03542 * 10 9 7 31 31 H 1.09009 * 110.99998 * 204.91837 * 11 10 9 32 32 H 1.08992 * 111.00522 * 81.06488 * 11 10 9 33 33 H 1.08999 * 110.72487 * 277.13935 * 12 11 10 34 34 H 1.09005 * 110.72069 * 153.86660 * 12 11 10 35 35 H 1.09002 * 109.47069 * 56.74525 * 15 13 9 36 36 H 1.09001 * 109.47374 * 296.74244 * 15 13 9 37 37 H 0.97001 * 119.99966 * 354.96667 * 16 15 13 38 38 H 1.08999 * 109.47232 * 300.00224 * 21 19 17 39 39 H 1.08997 * 109.46677 * 60.00179 * 21 19 17 40 40 H 1.09008 * 109.47059 * 300.00221 * 22 21 19 41 41 H 1.08996 * 109.47461 * 180.02562 * 22 21 19 42 42 H 1.08992 * 109.47343 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.46834 * 59.99811 * 23 22 21 44 44 H 1.08999 * 109.47274 * 60.00006 * 27 24 23 45 45 H 1.08992 * 109.46999 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1097 -2.5515 0.2933 11 6 -0.2521 -4.0182 0.7709 12 6 0.7658 -4.7450 -0.1471 13 6 1.9005 -3.7092 -0.2931 14 1 2.6999 -3.9330 0.4132 15 6 2.4470 -3.7341 -1.7220 16 7 3.0863 -5.0271 -1.9779 17 6 3.5523 -5.3166 -3.2090 18 8 3.4419 -4.5068 -4.1050 19 6 4.2105 -6.6465 -3.4721 20 1 3.5037 -7.4494 -3.2625 21 6 5.4358 -6.7968 -2.5682 22 6 6.1044 -8.1467 -2.8358 23 6 6.5394 -8.2190 -4.3009 24 6 5.3140 -8.0686 -5.2047 25 9 5.7118 -8.1342 -6.5443 26 9 4.4072 -9.0995 -4.9361 27 6 4.6454 -6.7187 -4.9372 28 1 -0.4850 0.8400 0.0004 29 1 -0.7023 -2.3863 -0.6064 30 1 -0.4179 -1.8643 1.0813 31 1 -1.2637 -4.3876 0.6020 32 1 0.0279 -4.1166 1.8197 33 1 0.3202 -4.9681 -1.1165 34 1 1.1329 -5.6547 0.3283 35 1 3.1793 -2.9360 -1.8448 36 1 1.6284 -3.5877 -2.4267 37 1 3.1742 -5.6749 -1.2613 38 1 6.1426 -5.9938 -2.7778 39 1 5.1259 -6.7449 -1.5245 40 1 5.3978 -8.9499 -2.6265 41 1 6.9771 -8.2540 -2.1916 42 1 7.0160 -9.1805 -4.4914 43 1 7.2459 -7.4158 -4.5101 44 1 5.3519 -5.9155 -5.1464 45 1 3.7728 -6.6115 -5.5813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028134113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:53 Heat of formation + Delta-G solvation = -137.874943 kcal Electronic energy + Delta-G solvation = -27324.220673 eV Core-core repulsion = 23204.811379 eV Total energy + Delta-G solvation = -4119.409294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.19308 -47.18026 -40.04522 -37.90214 -37.08326 -34.34139 -32.52234 -31.70263 -30.42419 -29.59946 -28.56942 -25.23269 -24.44875 -23.23254 -23.04699 -20.83430 -20.32248 -19.95869 -19.46295 -17.95400 -17.17593 -16.79607 -16.62382 -16.00449 -15.82477 -15.41020 -15.12828 -14.69658 -14.35850 -14.23670 -13.93044 -13.72737 -13.59214 -13.51008 -13.11969 -13.06386 -12.80481 -12.49496 -12.19715 -12.10033 -11.91832 -11.77094 -11.55546 -11.34648 -11.24712 -11.13858 -10.96421 -10.82125 -10.67995 -10.27868 -10.13178 -9.97792 -9.87376 -9.75120 -9.55047 -8.71925 -8.60761 -6.87484 -5.79509 -3.16374 2.76547 3.19626 3.38403 3.43805 3.44785 3.54649 3.90688 3.95988 4.09317 4.45920 4.47902 4.56485 4.69980 4.83829 4.85997 5.05580 5.11602 5.30010 5.36813 5.39657 5.42659 5.48170 5.52023 5.59162 5.60014 5.65229 5.77303 5.77708 5.90095 6.02110 6.09940 6.20945 6.42309 6.51177 6.58694 6.66468 6.77372 7.01972 7.48760 7.57734 7.72094 7.76310 8.22376 8.41098 9.14320 9.75021 10.42042 11.32324 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.002913 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.492982 B = 9610.757807 C =10242.034927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.108 3.892 16 N -0.720 5.720 17 C 0.513 3.487 18 O -0.540 6.540 19 C -0.106 4.106 20 H 0.105 0.895 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.159 4.159 24 C 0.289 3.711 25 F -0.201 7.201 26 F -0.200 7.200 27 C -0.139 4.139 28 H 0.254 0.746 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.303 -19.068 -3.808 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.371 5.371 17 C 0.298 3.702 18 O -0.418 6.418 19 C -0.128 4.128 20 H 0.123 0.877 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.197 4.197 24 C 0.253 3.747 25 F -0.182 7.182 26 F -0.181 7.181 27 C -0.177 4.177 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.229 0.771 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.120 -18.214 -4.446 21.305 hybrid contribution 0.380 0.495 0.020 0.624 sum 10.500 -17.719 -4.426 21.067 Atomic orbital electron populations 1.69936 1.05030 1.25350 1.55780 1.24912 0.95680 0.97886 1.01345 0.86148 0.78698 0.83347 0.77727 1.21378 1.21623 1.20576 1.18975 0.90379 0.82184 1.44802 0.90657 1.44482 1.06125 1.00881 1.79819 1.21461 0.84719 0.90238 0.98875 1.23007 0.97537 0.99603 0.98593 1.22610 0.97119 0.96952 0.99751 1.21123 0.94459 0.88092 0.91955 0.94543 1.22265 0.97218 0.82813 0.99392 1.46130 1.60041 1.19890 1.10994 1.20290 0.78760 0.88209 0.82933 1.90726 1.57147 1.49876 1.44008 1.21275 0.98822 0.97291 0.95397 0.87682 1.21640 0.96109 0.98084 0.99651 1.21512 1.01629 0.97942 0.94346 1.22553 0.96155 1.05232 0.95803 1.21113 0.88442 0.86867 0.78272 1.93010 1.91390 1.96953 1.36885 1.92989 1.69538 1.61924 1.93668 1.22296 1.03521 0.94636 0.97241 0.93566 0.95658 0.90860 0.92335 0.92292 0.91841 0.92406 0.91490 0.91608 0.77097 0.90588 0.90178 0.90564 0.89965 0.89431 0.88592 0.87948 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.42 10.56 55.49 0.59 -25.83 16 2 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.24 -6.35 9.75 -15.06 -0.15 -6.49 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.34 3.13 -162.57 -0.51 -14.85 16 10 C 0.17 4.04 5.42 -2.53 -0.01 4.02 16 11 C -0.15 -2.66 7.08 -24.58 -0.17 -2.84 16 12 C -0.13 -2.03 6.14 -24.90 -0.15 -2.18 16 13 C 0.15 2.90 3.21 -66.95 -0.21 2.68 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 15 C 0.11 2.01 5.08 -4.04 -0.02 1.99 16 16 N -0.72 -9.96 5.23 -60.29 -0.32 -10.28 16 17 C 0.51 7.34 7.15 -10.98 -0.08 7.26 16 18 O -0.54 -10.24 15.97 5.56 0.09 -10.15 16 19 C -0.11 -1.05 2.41 -91.77 -0.22 -1.27 16 20 H 0.11 0.93 7.80 -51.93 -0.41 0.52 16 21 C -0.12 -0.87 5.10 -26.73 -0.14 -1.01 16 22 C -0.12 -0.69 5.80 -26.73 -0.16 -0.85 16 23 C -0.16 -1.09 5.45 -26.72 -0.15 -1.23 16 24 C 0.29 2.77 2.10 -26.73 -0.06 2.71 16 25 F -0.20 -2.27 17.06 2.25 0.04 -2.23 16 26 F -0.20 -2.14 16.03 2.25 0.04 -2.10 16 27 C -0.14 -1.46 4.02 -26.73 -0.11 -1.57 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 30 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 31 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.02 7.80 -51.93 -0.40 0.62 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.42 7.90 -51.93 -0.41 1.01 16 36 H 0.07 1.39 8.06 -51.93 -0.42 0.98 16 37 H 0.40 4.19 7.78 -40.82 -0.32 3.88 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.51 7.56 -51.93 -0.39 0.12 16 40 H 0.08 0.45 7.80 -51.92 -0.41 0.05 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 45 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -31.87 360.18 -8.69 -40.56 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.30 Total: 1.48 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.72 Total: 1.11 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.24 Total: -50.96 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.07 Total: -4.34 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.87 -8.69 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028134113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.312 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds