Wall clock time and date at job start Tue Mar 31 2020 10:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99656 * 2 1 4 4 H 1.48506 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47174 * 300.00070 * 3 2 1 6 6 H 1.48502 * 109.47156 * 59.99972 * 3 2 1 7 7 C 1.38812 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99606 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99648 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.65281 * 14.80516 * 9 7 2 11 11 C 1.54909 * 104.83420 * 155.83153 * 10 9 7 12 12 C 1.55161 * 101.57919 * 37.00851 * 11 10 9 13 13 C 1.47028 * 125.64468 * 194.75801 * 9 7 2 14 14 H 1.08996 * 109.88467 * 300.67245 * 13 9 7 15 15 C 1.53004 * 109.87870 * 61.68178 * 13 9 7 16 16 N 1.46503 * 109.46661 * 184.49533 * 15 13 9 17 17 C 1.34772 * 119.99629 * 185.11322 * 16 15 13 18 18 O 1.21281 * 120.00604 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99933 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.46962 * 59.99937 * 19 17 16 21 21 C 1.52991 * 109.47152 * 179.97438 * 19 17 16 22 22 C 1.53000 * 109.47054 * 179.97438 * 21 19 17 23 23 C 1.53004 * 109.47391 * 299.99949 * 22 21 19 24 24 C 1.52997 * 109.46562 * 59.99729 * 23 22 21 25 25 F 1.39908 * 109.46720 * 179.97438 * 24 23 22 26 26 F 1.39905 * 109.47148 * 60.00651 * 24 23 22 27 27 C 1.52995 * 109.46931 * 299.99991 * 19 17 16 28 28 H 0.97007 * 119.99946 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36740 * 274.67785 * 10 9 7 30 30 H 1.09004 * 110.36447 * 36.99338 * 10 9 7 31 31 H 1.08998 * 111.00722 * 155.08597 * 11 10 9 32 32 H 1.09001 * 111.00255 * 278.90083 * 11 10 9 33 33 H 1.09003 * 110.71812 * 206.13376 * 12 11 10 34 34 H 1.09001 * 110.71685 * 82.86589 * 12 11 10 35 35 H 1.09000 * 109.47192 * 64.50063 * 15 13 9 36 36 H 1.09001 * 109.47325 * 304.49408 * 15 13 9 37 37 H 0.97003 * 120.00322 * 5.11460 * 16 15 13 38 38 H 1.08997 * 109.47535 * 300.00302 * 21 19 17 39 39 H 1.09005 * 109.47131 * 60.00172 * 21 19 17 40 40 H 1.08996 * 109.46988 * 60.00396 * 22 21 19 41 41 H 1.09000 * 109.47228 * 180.02562 * 22 21 19 42 42 H 1.09000 * 109.46717 * 300.00118 * 23 22 21 43 43 H 1.08999 * 109.47121 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47485 * 299.99909 * 27 19 17 45 45 H 1.09002 * 109.47617 * 59.99874 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1071 -2.5530 -0.3061 11 6 -0.2454 -4.0219 -0.7780 12 6 0.7646 -4.7443 0.1523 13 6 1.8979 -3.7078 0.3033 14 1 2.7040 -3.9321 -0.3952 15 6 2.4319 -3.7258 1.7370 16 7 3.0950 -5.0064 1.9950 17 6 3.5542 -5.2906 3.2298 18 8 3.4181 -4.4866 4.1275 19 6 4.2369 -6.6078 3.4951 20 1 5.1184 -6.6946 2.8599 21 6 4.6587 -6.6767 4.9641 22 6 5.3512 -8.0141 5.2336 23 6 4.3849 -9.1599 4.9262 24 6 3.9631 -9.0908 3.4572 25 9 3.0800 -10.1389 3.1759 26 9 5.0941 -9.2032 2.6414 27 6 3.2713 -7.7538 3.1870 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7076 -2.3834 0.5876 30 1 -0.4067 -1.8695 -1.1007 31 1 -1.2583 -4.3906 -0.6162 32 1 0.0432 -4.1251 -1.8240 33 1 1.1358 -5.6562 -0.3155 34 1 0.3105 -4.9628 1.1188 35 1 1.6042 -3.5982 2.4347 36 1 3.1467 -2.9134 1.8687 37 1 3.2036 -5.6497 1.2772 38 1 5.3467 -5.8602 5.1833 39 1 3.7775 -6.5897 5.5997 40 1 6.2324 -8.1015 4.5981 41 1 5.6514 -8.0634 6.2803 42 1 3.5038 -9.0724 5.5618 43 1 4.8785 -10.1127 5.1178 44 1 2.3898 -7.6670 3.8222 45 1 2.9711 -7.7045 2.1403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028134116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:57 Heat of formation + Delta-G solvation = -137.758343 kcal Electronic energy + Delta-G solvation = -27469.342891 eV Core-core repulsion = 23349.938653 eV Total energy + Delta-G solvation = -4119.404238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.24860 -47.22926 -40.04043 -37.90181 -37.05003 -34.34230 -32.53825 -31.83401 -30.20640 -29.64081 -28.61723 -25.21132 -24.45349 -23.47348 -22.82692 -20.82164 -20.28429 -19.99916 -19.44415 -17.92999 -17.16797 -16.84172 -16.66230 -16.23472 -15.84104 -15.48470 -14.87175 -14.56000 -14.39468 -14.34635 -13.87008 -13.73679 -13.68156 -13.54694 -13.23718 -12.95179 -12.83881 -12.57936 -12.19787 -12.03740 -11.92021 -11.69207 -11.61631 -11.34183 -11.16938 -11.05482 -10.95885 -10.82977 -10.75938 -10.27547 -10.10882 -9.96956 -9.86966 -9.75737 -9.55103 -8.71855 -8.60224 -6.86563 -5.79487 -3.16308 2.71519 3.26539 3.38160 3.44444 3.46251 3.48800 3.76452 3.97359 4.02360 4.46189 4.52744 4.58220 4.69341 4.81513 4.91302 5.02244 5.10418 5.29897 5.33198 5.37571 5.44944 5.47310 5.50585 5.54519 5.59788 5.68336 5.78058 5.87656 6.02775 6.03919 6.10476 6.21223 6.42849 6.51256 6.59123 6.66876 6.77631 7.02406 7.48915 7.58443 7.72058 7.76688 8.22664 8.40875 9.14743 9.75319 10.42549 11.32561 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.003084 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.666628 B = 9078.225993 C = 9979.879994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.108 3.892 16 N -0.721 5.721 17 C 0.513 3.487 18 O -0.537 6.537 19 C -0.106 4.106 20 H 0.105 0.895 21 C -0.105 4.105 22 C -0.119 4.119 23 C -0.159 4.159 24 C 0.292 3.708 25 F -0.201 7.201 26 F -0.198 7.198 27 C -0.151 4.151 28 H 0.253 0.747 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.395 0.605 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.386 -19.910 6.880 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.372 5.372 17 C 0.298 3.702 18 O -0.414 6.414 19 C -0.128 4.128 20 H 0.123 0.877 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.197 4.197 24 C 0.256 3.744 25 F -0.182 7.182 26 F -0.179 7.179 27 C -0.189 4.189 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.229 0.771 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.209 -19.067 7.469 21.709 hybrid contribution 0.454 0.448 -0.456 0.784 sum 7.663 -18.619 7.013 21.320 Atomic orbital electron populations 1.69950 1.05032 1.25233 1.55845 1.24924 0.95683 0.97896 1.01329 0.86074 0.78934 0.83652 0.77275 1.20361 1.21684 1.21577 1.19025 0.90415 0.82163 1.44671 0.90609 1.44495 1.06463 1.01025 1.79351 1.21454 0.84801 0.90164 0.98834 1.23008 0.97569 0.99612 0.98553 1.22605 0.97124 0.96964 0.99696 1.21134 0.94530 0.88120 0.91916 0.94525 1.22265 0.96864 0.83235 0.99325 1.46193 1.59394 1.20899 1.10748 1.20295 0.78984 0.88047 0.82917 1.90722 1.56810 1.49796 1.44076 1.21312 0.99133 0.92204 1.00117 0.87705 1.21438 1.01851 0.97268 0.93717 1.21552 0.98090 0.93076 1.02943 1.22559 1.02599 1.01782 0.92788 1.21026 0.77079 0.85819 0.90516 1.93022 1.69552 1.60681 1.94931 1.93002 1.52849 1.96648 1.75442 1.22500 0.99752 0.91369 1.05320 0.93628 0.95583 0.90978 0.92330 0.92289 0.92421 0.91850 0.91600 0.91422 0.77148 0.90056 0.90514 0.90772 0.90047 0.88589 0.89433 0.88041 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.47 10.58 55.49 0.59 -25.88 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.37 9.72 -15.06 -0.15 -6.52 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.59 -14.45 3.13 -162.57 -0.51 -14.96 16 10 C 0.17 4.06 5.41 -2.53 -0.01 4.05 16 11 C -0.15 -2.68 7.09 -24.58 -0.17 -2.86 16 12 C -0.13 -2.05 6.20 -24.90 -0.15 -2.20 16 13 C 0.15 2.92 3.19 -66.95 -0.21 2.71 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.03 5.10 -4.04 -0.02 2.01 16 16 N -0.72 -10.22 5.25 -60.29 -0.32 -10.53 16 17 C 0.51 7.33 7.15 -10.98 -0.08 7.26 16 18 O -0.54 -10.04 15.98 5.56 0.09 -9.95 16 19 C -0.11 -1.05 2.40 -91.78 -0.22 -1.27 16 20 H 0.10 0.94 7.80 -51.93 -0.41 0.54 16 21 C -0.10 -0.96 4.49 -26.74 -0.12 -1.08 16 22 C -0.12 -0.80 5.80 -26.73 -0.16 -0.96 16 23 C -0.16 -1.08 5.46 -26.73 -0.15 -1.22 16 24 C 0.29 2.55 2.10 -26.76 -0.06 2.49 16 25 F -0.20 -2.06 17.06 2.25 0.04 -2.02 16 26 F -0.20 -1.98 16.02 2.25 0.04 -1.95 16 27 C -0.15 -1.31 4.63 -26.76 -0.12 -1.43 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 30 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.02 7.78 -51.93 -0.40 0.62 16 35 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 36 H 0.07 1.46 7.86 -51.93 -0.41 1.05 16 37 H 0.40 4.45 7.82 -40.82 -0.32 4.13 16 38 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.07 0.51 7.80 -51.93 -0.41 0.10 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.09 0.76 7.56 -51.93 -0.39 0.37 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -31.68 360.23 -8.69 -40.36 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.30 Total: 1.69 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.72 Total: 0.85 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.24 Total: -51.38 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.07 Total: -3.97 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.68 -8.69 -40.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028134116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.396 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds