Wall clock time and date at job start Tue Mar 31 2020 10:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00386 * 2 1 4 4 H 1.48504 * 109.46635 * 269.99991 * 3 2 1 5 5 H 1.48506 * 109.46858 * 29.99419 * 3 2 1 6 6 H 1.48499 * 109.47390 * 149.99788 * 3 2 1 7 7 C 1.38810 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00353 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00259 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64439 * 14.73127 * 9 7 2 11 11 C 1.54916 * 104.83302 * 155.89238 * 10 9 7 12 12 C 1.55160 * 101.57785 * 37.00929 * 11 10 9 13 13 C 1.47021 * 125.65090 * 194.75288 * 9 7 2 14 14 H 1.08998 * 110.01277 * 300.52841 * 13 9 7 15 15 C 1.52995 * 109.87871 * 61.62459 * 13 9 7 16 16 N 1.46502 * 109.46956 * 182.39787 * 15 13 9 17 17 C 1.34782 * 120.00336 * 185.13140 * 16 15 13 18 18 O 1.21281 * 119.99310 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00363 * 180.02562 * 17 16 15 20 20 H 1.09008 * 109.46641 * 299.99968 * 19 17 16 21 21 C 1.52996 * 109.47299 * 180.02562 * 19 17 16 22 22 C 1.53001 * 109.47100 * 179.97438 * 21 19 17 23 23 C 1.53002 * 109.46633 * 60.00378 * 22 21 19 24 24 C 1.52996 * 109.47069 * 299.99641 * 23 22 21 25 25 F 1.39904 * 109.46895 * 180.02562 * 24 23 22 26 26 F 1.39904 * 109.46992 * 300.00251 * 24 23 22 27 27 C 1.52993 * 109.47382 * 59.99916 * 19 17 16 28 28 H 0.96994 * 119.99441 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.37014 * 37.05127 * 10 9 7 30 30 H 1.09003 * 110.36762 * 274.72728 * 10 9 7 31 31 H 1.08998 * 111.00289 * 278.93613 * 11 10 9 32 32 H 1.08994 * 111.00296 * 155.07917 * 11 10 9 33 33 H 1.09005 * 110.71457 * 206.13868 * 12 11 10 34 34 H 1.08996 * 110.87438 * 82.93704 * 12 11 10 35 35 H 1.09000 * 109.47871 * 62.39702 * 15 13 9 36 36 H 1.09003 * 109.47147 * 302.39519 * 15 13 9 37 37 H 0.96999 * 120.00177 * 5.13528 * 16 15 13 38 38 H 1.08999 * 109.46936 * 300.00102 * 21 19 17 39 39 H 1.09008 * 109.47185 * 60.00005 * 21 19 17 40 40 H 1.09005 * 109.47102 * 179.97438 * 22 21 19 41 41 H 1.08991 * 109.47482 * 300.00164 * 22 21 19 42 42 H 1.08996 * 109.47241 * 60.00184 * 23 22 21 43 43 H 1.09003 * 109.47075 * 179.97438 * 23 22 21 44 44 H 1.09008 * 109.47370 * 300.00260 * 27 19 17 45 45 H 1.09003 * 109.47310 * 59.99916 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1073 -2.5529 -0.3046 11 6 -0.2461 -4.0222 -0.7753 12 6 0.7639 -4.7441 0.1554 13 6 1.8975 -3.7078 0.3053 14 1 2.7028 -3.9356 -0.3931 15 6 2.4318 -3.7248 1.7388 16 7 3.0505 -5.0239 2.0140 17 6 3.5004 -5.3074 3.2525 18 8 3.3925 -4.4870 4.1392 19 6 4.1373 -6.6435 3.5354 20 1 3.4214 -7.4386 3.3268 21 6 4.5562 -6.7077 5.0055 22 6 5.2023 -8.0645 5.2928 23 6 6.4345 -8.2412 4.4032 24 6 6.0156 -8.1769 2.9331 25 9 7.1423 -8.3390 2.1197 26 9 5.0967 -9.1972 2.6650 27 6 5.3691 -6.8199 2.6454 28 1 -0.4849 0.8400 -0.0004 29 1 -0.4069 -1.8700 -1.0996 30 1 -0.7075 -2.3826 0.5892 31 1 0.0429 -4.1264 -1.8211 32 1 -1.2590 -4.3904 -0.6129 33 1 1.1348 -5.6564 -0.3119 34 1 0.3120 -4.9641 1.1226 35 1 1.6097 -3.5591 2.4351 36 1 3.1744 -2.9359 1.8592 37 1 3.1364 -5.6801 1.3048 38 1 5.2718 -5.9126 5.2144 39 1 3.6783 -6.5822 5.6393 40 1 5.5012 -8.1102 6.3401 41 1 4.4864 -8.8594 5.0840 42 1 7.1504 -7.4463 4.6121 43 1 6.8951 -9.2076 4.6082 44 1 5.0703 -6.7743 1.5981 45 1 6.0850 -6.0248 2.8539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028134118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:06 Heat of formation + Delta-G solvation = -137.721780 kcal Electronic energy + Delta-G solvation = -27427.393968 eV Core-core repulsion = 23307.991316 eV Total energy + Delta-G solvation = -4119.402652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.24425 -47.22648 -40.03909 -37.90231 -37.04434 -34.34064 -32.53514 -31.82901 -30.19974 -29.64231 -28.60768 -25.21629 -24.44889 -23.46604 -22.83138 -20.82064 -20.30456 -19.95005 -19.45652 -17.92634 -17.17154 -16.82868 -16.65716 -16.23507 -15.87908 -15.41814 -14.89562 -14.60716 -14.39314 -14.27243 -13.94450 -13.70978 -13.62749 -13.54150 -13.25665 -12.98251 -12.84403 -12.57143 -12.12107 -12.03518 -11.90848 -11.79644 -11.56987 -11.33142 -11.16632 -11.05554 -10.96588 -10.80793 -10.75641 -10.26794 -10.12755 -9.97744 -9.86523 -9.75514 -9.54849 -8.71520 -8.59720 -6.86611 -5.79182 -3.16110 2.71503 3.26609 3.38498 3.44218 3.45828 3.49002 3.76691 3.97732 4.02775 4.46384 4.52936 4.58424 4.69585 4.81804 4.91340 5.02539 5.10524 5.30343 5.33633 5.37655 5.45140 5.47897 5.51254 5.54768 5.59791 5.68442 5.78335 5.87492 6.02510 6.04559 6.10851 6.21868 6.43227 6.51649 6.59093 6.67032 6.78100 7.02579 7.49007 7.58532 7.72108 7.76647 8.22977 8.40965 9.14913 9.75487 10.42771 11.32831 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.003050 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.527321 B = 9178.643843 C = 9645.010072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.108 3.892 16 N -0.722 5.722 17 C 0.513 3.487 18 O -0.537 6.537 19 C -0.106 4.106 20 H 0.105 0.895 21 C -0.105 4.105 22 C -0.119 4.119 23 C -0.159 4.159 24 C 0.292 3.708 25 F -0.201 7.201 26 F -0.198 7.198 27 C -0.151 4.151 28 H 0.254 0.746 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.395 0.605 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.329 -19.005 6.422 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.017 4.017 16 N -0.372 5.372 17 C 0.297 3.703 18 O -0.414 6.414 19 C -0.127 4.127 20 H 0.123 0.877 21 C -0.143 4.143 22 C -0.156 4.156 23 C -0.197 4.197 24 C 0.256 3.744 25 F -0.182 7.182 26 F -0.179 7.179 27 C -0.190 4.190 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.228 0.772 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.169 -18.146 7.009 21.505 hybrid contribution 0.522 0.467 -0.481 0.850 sum 9.691 -17.679 6.528 21.191 Atomic orbital electron populations 1.69940 1.05033 1.25352 1.55763 1.24920 0.95680 0.97887 1.01305 0.86145 0.78815 0.83382 0.77584 1.21505 1.21556 1.20516 1.18977 0.90379 0.82180 1.44813 0.90675 1.44483 1.06455 1.01021 1.79349 1.21457 0.84792 0.90155 0.98840 1.23005 0.97569 0.99613 0.98536 1.22606 0.97156 0.96961 0.99713 1.21127 0.94526 0.88126 0.91898 0.94556 1.22259 0.97551 0.82598 0.99251 1.46195 1.60997 1.19202 1.10854 1.20298 0.78753 0.88346 0.82856 1.90723 1.56586 1.49192 1.44891 1.21309 0.97045 0.97147 0.97243 0.87703 1.21440 1.02118 0.97020 0.93701 1.21551 0.96082 0.98225 0.99782 1.22558 1.00573 1.05231 0.91377 1.21040 0.76498 0.86438 0.90459 1.93021 1.53137 1.96317 1.75706 1.93000 1.67229 1.62629 1.95080 1.22520 0.98737 0.95544 1.02167 0.93574 0.90980 0.95581 0.92289 0.92325 0.92429 0.91833 0.91540 0.91507 0.77153 0.90503 0.90069 0.90049 0.90771 0.88591 0.89432 0.88822 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.58 55.49 0.59 -25.90 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.24 -6.39 9.76 -15.06 -0.15 -6.54 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.46 3.13 -162.57 -0.51 -14.97 16 10 C 0.17 4.07 5.41 -2.53 -0.01 4.06 16 11 C -0.15 -2.69 7.09 -24.58 -0.17 -2.86 16 12 C -0.13 -2.06 6.10 -24.89 -0.15 -2.22 16 13 C 0.15 2.93 3.22 -66.95 -0.22 2.72 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.04 5.07 -4.04 -0.02 2.02 16 16 N -0.72 -10.22 5.22 -60.29 -0.31 -10.54 16 17 C 0.51 7.34 7.15 -10.99 -0.08 7.26 16 18 O -0.54 -10.05 15.98 5.56 0.09 -9.96 16 19 C -0.11 -1.05 2.40 -91.78 -0.22 -1.27 16 20 H 0.10 0.93 7.80 -51.92 -0.41 0.52 16 21 C -0.10 -0.96 4.49 -26.73 -0.12 -1.08 16 22 C -0.12 -0.80 5.80 -26.73 -0.16 -0.96 16 23 C -0.16 -1.09 5.45 -26.73 -0.15 -1.24 16 24 C 0.29 2.58 2.10 -26.71 -0.06 2.52 16 25 F -0.20 -2.10 17.06 2.25 0.04 -2.06 16 26 F -0.20 -1.98 16.02 2.25 0.04 -1.95 16 27 C -0.15 -1.34 4.63 -26.72 -0.12 -1.47 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 30 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.03 7.81 -51.93 -0.41 0.63 16 35 H 0.07 1.41 8.08 -51.93 -0.42 0.99 16 36 H 0.07 1.43 7.92 -51.93 -0.41 1.02 16 37 H 0.40 4.45 7.75 -40.82 -0.32 4.13 16 38 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 39 H 0.08 0.81 8.10 -51.92 -0.42 0.39 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.50 7.80 -51.93 -0.41 0.10 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.78 7.57 -51.92 -0.39 0.39 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -31.66 360.22 -8.69 -40.35 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.30 Total: 1.80 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.72 Total: 0.84 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.24 Total: -51.41 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.00 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.66 -8.69 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028134118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.372 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds