Wall clock time and date at job start Tue Mar 31 2020 11:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99955 * 2 1 4 4 H 1.48499 * 109.47450 * 89.99814 * 3 2 1 5 5 H 1.48505 * 109.47165 * 329.99622 * 3 2 1 6 6 H 1.48497 * 109.47130 * 209.99582 * 3 2 1 7 7 C 1.38815 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 20.00146 * 7 2 1 9 9 N 1.36940 * 119.99862 * 199.99717 * 7 2 1 10 10 C 1.47429 * 125.64777 * 20.91010 * 9 7 2 11 11 C 1.54906 * 104.83280 * 155.82957 * 10 9 7 12 12 C 1.55164 * 101.58320 * 37.00632 * 11 10 9 13 13 C 1.47019 * 125.64635 * 200.59484 * 9 7 2 14 14 H 1.09003 * 109.88387 * 300.51578 * 13 9 7 15 15 C 1.53000 * 109.88386 * 61.68588 * 13 9 7 16 16 N 1.46505 * 109.46780 * 300.88014 * 15 13 9 17 17 C 1.34776 * 119.99698 * 173.59921 * 16 15 13 18 18 O 1.21273 * 120.00185 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.99678 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46801 * 300.00023 * 19 17 16 21 21 C 1.52998 * 109.46702 * 180.02562 * 20 19 17 22 22 C 1.52995 * 109.47468 * 59.99804 * 21 20 19 23 23 F 1.39903 * 109.47025 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.47110 * 59.99922 * 22 21 20 25 25 C 1.53001 * 109.47319 * 299.99819 * 22 21 20 26 26 C 1.52999 * 109.46606 * 180.02562 * 19 17 16 27 27 H 0.97005 * 120.00053 * 174.90951 * 1 2 3 28 28 H 1.08997 * 110.36717 * 274.66883 * 10 9 7 29 29 H 1.08999 * 110.36617 * 36.98964 * 10 9 7 30 30 H 1.08993 * 111.00543 * 155.07815 * 11 10 9 31 31 H 1.09004 * 111.00491 * 278.89952 * 11 10 9 32 32 H 1.08998 * 110.71426 * 82.85642 * 12 11 10 33 33 H 1.08998 * 110.72368 * 205.95687 * 12 11 10 34 34 H 1.08995 * 109.47154 * 60.87975 * 15 13 9 35 35 H 1.08994 * 109.46892 * 180.88087 * 15 13 9 36 36 H 0.97001 * 119.99802 * 353.59735 * 16 15 13 37 37 H 1.08997 * 109.47096 * 60.00147 * 19 17 16 38 38 H 1.08997 * 109.47396 * 299.99940 * 20 19 17 39 39 H 1.08996 * 109.47250 * 60.00617 * 20 19 17 40 40 H 1.09008 * 109.47175 * 299.99582 * 21 20 19 41 41 H 1.09004 * 109.47273 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47396 * 300.00190 * 25 22 21 43 43 H 1.08996 * 109.47250 * 179.97438 * 25 22 21 44 44 H 1.09000 * 109.47201 * 299.99428 * 26 19 17 45 45 H 1.08997 * 109.47414 * 60.00168 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 1.4000 5 1 1.4476 2.6527 -0.7001 6 1 3.5477 1.4401 -0.6999 7 6 2.0102 -1.2022 0.0005 8 1 1.5191 -2.1094 -0.3190 9 7 3.3177 -1.2377 0.4061 10 6 3.9822 -0.2306 1.2533 11 6 5.1606 -0.9859 1.9170 12 6 5.6184 -1.9214 0.7668 13 6 4.2894 -2.2899 0.0742 14 1 3.9330 -3.2527 0.4404 15 6 4.4946 -2.3496 -1.4408 16 7 3.2139 -2.6261 -2.0964 17 6 3.1249 -2.5962 -3.4409 18 8 4.1050 -2.3408 -4.1080 19 6 1.8073 -2.8800 -4.1153 20 6 1.3379 -4.2883 -3.7449 21 6 0.0006 -4.5767 -4.4301 22 6 0.1733 -4.4791 -5.9471 23 9 -1.0494 -4.7433 -6.5735 24 9 1.1247 -5.4139 -6.3693 25 6 0.6427 -3.0707 -6.3175 26 6 1.9798 -2.7828 -5.6324 27 1 -0.4850 -0.8368 -0.0745 28 1 4.3546 0.5922 0.6431 29 1 3.2937 0.1404 2.0125 30 1 5.9562 -0.2969 2.2003 31 1 4.8203 -1.5617 2.7777 32 1 6.2813 -1.3936 0.0813 33 1 6.1062 -2.8113 1.1645 34 1 4.8841 -1.3944 -1.7926 35 1 5.2039 -3.1417 -1.6804 36 1 2.4301 -2.8307 -1.5628 37 1 1.0663 -2.1516 -3.7860 38 1 2.0789 -5.0167 -4.0742 39 1 1.2152 -4.3579 -2.6641 40 1 -0.7407 -3.8483 -4.1011 41 1 -0.3341 -5.5798 -4.1659 42 1 -0.0985 -2.3424 -5.9886 43 1 0.7662 -3.0014 -7.3982 44 1 2.3144 -1.7797 -5.8966 45 1 2.7207 -3.5115 -5.9613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028162703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:40 Heat of formation + Delta-G solvation = -135.175500 kcal Electronic energy + Delta-G solvation = -28183.650974 eV Core-core repulsion = 24064.358736 eV Total energy + Delta-G solvation = -4119.292237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.01189 -46.99537 -39.77194 -38.15207 -36.80138 -34.01283 -32.86048 -31.26730 -30.59447 -29.91134 -29.04563 -25.12583 -23.84214 -23.26060 -22.75680 -21.20709 -20.38830 -19.77239 -19.18776 -17.70973 -17.43210 -16.88219 -16.54817 -16.28957 -15.81358 -15.39525 -15.02400 -14.70676 -14.13319 -13.90461 -13.78358 -13.57113 -13.50758 -13.33113 -13.26284 -12.92711 -12.77268 -12.53307 -12.36430 -12.16443 -11.79244 -11.73958 -11.58967 -11.38915 -11.30189 -11.07641 -10.96620 -10.74118 -10.66859 -10.51794 -10.20322 -10.06599 -9.57991 -9.36342 -9.21026 -8.68213 -8.37829 -7.18900 -6.41110 -3.40413 3.10516 3.35869 3.47906 3.60890 3.67696 3.69867 3.99093 4.27061 4.32585 4.49318 4.77745 4.86764 4.88866 4.99146 5.12109 5.17135 5.18379 5.21874 5.31983 5.35972 5.52088 5.53880 5.65002 5.66609 5.72192 5.80379 5.85561 5.88872 5.92767 6.05458 6.07861 6.13453 6.20448 6.28018 6.28712 6.34604 6.56940 6.73223 6.78838 7.06622 7.56800 8.13589 8.19169 8.75791 8.87161 9.43769 10.14623 11.03053 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.004082 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.859983 B = 6857.504494 C = 7646.448714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 1.064 2.936 4 H -0.294 1.294 5 H -0.300 1.300 6 H -0.285 1.285 7 C -0.322 4.322 8 H 0.071 0.929 9 N -0.601 5.601 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.123 4.123 13 C 0.144 3.856 14 H 0.044 0.956 15 C 0.114 3.886 16 N -0.699 5.699 17 C 0.516 3.484 18 O -0.561 6.561 19 C -0.113 4.113 20 C -0.108 4.108 21 C -0.156 4.156 22 C 0.287 3.713 23 F -0.205 7.205 24 F -0.200 7.200 25 C -0.158 4.158 26 C -0.096 4.096 27 H 0.262 0.738 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.409 0.591 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -7.723 -5.673 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.213 4.213 3 Si 0.896 3.104 4 H -0.221 1.221 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.449 4.449 8 H 0.088 0.912 9 N -0.328 5.328 10 C -0.020 4.020 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.036 3.964 14 H 0.062 0.938 15 C -0.012 4.012 16 N -0.352 5.352 17 C 0.302 3.698 18 O -0.441 6.441 19 C -0.134 4.134 20 C -0.146 4.146 21 C -0.194 4.194 22 C 0.251 3.749 23 F -0.186 7.186 24 F -0.181 7.181 25 C -0.196 4.196 26 C -0.134 4.134 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.249 0.751 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.125 -5.941 -6.103 9.463 hybrid contribution -0.295 -1.777 0.060 1.802 sum 3.830 -7.717 -6.043 10.523 Atomic orbital electron populations 1.70940 1.05786 1.29833 1.49294 1.25919 0.96391 1.00959 0.98027 0.83810 0.74308 0.75899 0.76339 1.22122 1.22829 1.21226 1.19780 0.84628 0.94985 1.45552 0.91170 1.44852 1.07642 1.23808 1.56462 1.22044 0.93589 0.92828 0.93560 1.22714 0.98156 0.98477 0.97541 1.22517 0.96519 0.99445 0.97692 1.21299 0.90074 0.93839 0.91156 0.93846 1.21912 0.84970 0.99964 0.94321 1.46153 1.13788 1.69285 1.05982 1.20314 0.89784 0.77001 0.82748 1.90630 1.38666 1.50155 1.64644 1.21402 0.96800 0.98829 0.96396 1.21472 0.95788 0.95895 1.01438 1.22510 1.00419 1.05247 0.91197 1.21171 0.73226 0.88305 0.92215 1.92997 1.45683 1.95156 1.84772 1.92987 1.64967 1.68447 1.91714 1.22554 1.00196 0.93769 1.03055 1.21277 0.95323 1.04261 0.92539 0.92758 0.95142 0.92420 0.91646 0.91419 0.91343 0.91487 0.91971 0.93217 0.75134 0.87627 0.90525 0.89829 0.88215 0.89254 0.88498 0.89330 0.89688 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 13.70 55.49 0.76 -25.61 16 2 C -0.01 -0.30 5.45 -17.43 -0.10 -0.40 16 3 Si 1.06 25.69 24.72 -169.99 -4.20 21.49 16 4 H -0.29 -6.76 6.83 56.52 0.39 -6.38 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.29 -6.72 6.21 56.52 0.35 -6.37 16 7 C -0.32 -7.97 8.74 -15.06 -0.13 -8.10 16 8 H 0.07 1.76 6.31 -52.49 -0.33 1.42 16 9 N -0.60 -13.10 2.92 -162.57 -0.47 -13.58 16 10 C 0.10 2.11 4.72 -2.53 -0.01 2.10 16 11 C -0.13 -2.02 7.08 -24.58 -0.17 -2.20 16 12 C -0.12 -1.82 6.47 -24.89 -0.16 -1.98 16 13 C 0.14 2.58 3.38 -66.96 -0.23 2.35 16 14 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 15 C 0.11 2.07 5.22 -4.04 -0.02 2.05 16 16 N -0.70 -12.74 4.69 -60.29 -0.28 -13.02 16 17 C 0.52 9.29 7.15 -10.98 -0.08 9.22 16 18 O -0.56 -11.69 15.96 5.56 0.09 -11.60 16 19 C -0.11 -1.62 2.53 -91.77 -0.23 -1.85 16 20 C -0.11 -1.31 4.98 -26.73 -0.13 -1.45 16 21 C -0.16 -1.69 5.45 -26.73 -0.15 -1.84 16 22 C 0.29 3.42 2.10 -26.73 -0.06 3.36 16 23 F -0.21 -2.63 17.06 2.25 0.04 -2.59 16 24 F -0.20 -2.68 16.02 2.25 0.04 -2.64 16 25 C -0.16 -1.75 5.46 -26.75 -0.15 -1.89 16 26 C -0.10 -1.26 4.37 -26.75 -0.12 -1.38 16 27 H 0.26 7.35 8.73 -40.82 -0.36 7.00 16 28 H 0.03 0.65 5.24 -51.93 -0.27 0.38 16 29 H 0.06 1.24 6.89 -51.93 -0.36 0.88 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.41 7.49 5.03 -40.82 -0.21 7.29 16 37 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.08 0.95 7.80 -51.93 -0.41 0.55 16 39 H 0.08 0.99 7.56 -51.93 -0.39 0.60 16 40 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 45 H 0.08 1.10 7.76 -51.93 -0.40 0.70 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -30.20 349.10 -7.57 -37.76 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.06 Total: 6.53 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.73 Total: -2.00 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.00 Total: -52.21 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.07 Total: -5.23 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -4.20 Total: 21.49 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.20 -7.57 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028162703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.412 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds