Wall clock time and date at job start Tue Mar 31 2020 11:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99955 * 2 1 4 4 H 1.48499 * 109.47450 * 89.99814 * 3 2 1 5 5 H 1.48505 * 109.47165 * 329.99622 * 3 2 1 6 6 H 1.48497 * 109.47130 * 209.99582 * 3 2 1 7 7 C 1.38815 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 20.00146 * 7 2 1 9 9 N 1.36940 * 119.99862 * 199.99717 * 7 2 1 10 10 C 1.47429 * 125.64777 * 20.91010 * 9 7 2 11 11 C 1.54906 * 104.83280 * 155.82957 * 10 9 7 12 12 C 1.55164 * 101.58320 * 37.00632 * 11 10 9 13 13 C 1.47019 * 125.64635 * 200.59484 * 9 7 2 14 14 H 1.09003 * 109.88387 * 300.51578 * 13 9 7 15 15 C 1.53000 * 109.88386 * 61.68588 * 13 9 7 16 16 N 1.46505 * 109.46780 * 300.88014 * 15 13 9 17 17 C 1.34776 * 119.99698 * 173.59921 * 16 15 13 18 18 O 1.21273 * 120.00185 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.99678 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46801 * 300.00023 * 19 17 16 21 21 C 1.52998 * 109.46702 * 180.02562 * 20 19 17 22 22 C 1.52995 * 109.47468 * 59.99804 * 21 20 19 23 23 F 1.39903 * 109.47025 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.47110 * 59.99922 * 22 21 20 25 25 C 1.53001 * 109.47319 * 299.99819 * 22 21 20 26 26 C 1.52999 * 109.46606 * 180.02562 * 19 17 16 27 27 H 0.97005 * 120.00053 * 174.90951 * 1 2 3 28 28 H 1.08997 * 110.36717 * 274.66883 * 10 9 7 29 29 H 1.08999 * 110.36617 * 36.98964 * 10 9 7 30 30 H 1.08993 * 111.00543 * 155.07815 * 11 10 9 31 31 H 1.09004 * 111.00491 * 278.89952 * 11 10 9 32 32 H 1.08998 * 110.71426 * 82.85642 * 12 11 10 33 33 H 1.08998 * 110.72368 * 205.95687 * 12 11 10 34 34 H 1.08995 * 109.47154 * 60.87975 * 15 13 9 35 35 H 1.08994 * 109.46892 * 180.88087 * 15 13 9 36 36 H 0.97001 * 119.99802 * 353.59735 * 16 15 13 37 37 H 1.08997 * 109.47096 * 60.00147 * 19 17 16 38 38 H 1.08997 * 109.47396 * 299.99940 * 20 19 17 39 39 H 1.08996 * 109.47250 * 60.00617 * 20 19 17 40 40 H 1.09008 * 109.47175 * 299.99582 * 21 20 19 41 41 H 1.09004 * 109.47273 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47396 * 300.00190 * 25 22 21 43 43 H 1.08996 * 109.47250 * 179.97438 * 25 22 21 44 44 H 1.09000 * 109.47201 * 299.99428 * 26 19 17 45 45 H 1.08997 * 109.47414 * 60.00168 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 1.4000 5 1 1.4476 2.6527 -0.7001 6 1 3.5477 1.4401 -0.6999 7 6 2.0102 -1.2022 0.0005 8 1 1.5191 -2.1094 -0.3190 9 7 3.3177 -1.2377 0.4061 10 6 3.9822 -0.2306 1.2533 11 6 5.1606 -0.9859 1.9170 12 6 5.6184 -1.9214 0.7668 13 6 4.2894 -2.2899 0.0742 14 1 3.9330 -3.2527 0.4404 15 6 4.4946 -2.3496 -1.4408 16 7 3.2139 -2.6261 -2.0964 17 6 3.1249 -2.5962 -3.4409 18 8 4.1050 -2.3408 -4.1080 19 6 1.8073 -2.8800 -4.1153 20 6 1.3379 -4.2883 -3.7449 21 6 0.0006 -4.5767 -4.4301 22 6 0.1733 -4.4791 -5.9471 23 9 -1.0494 -4.7433 -6.5735 24 9 1.1247 -5.4139 -6.3693 25 6 0.6427 -3.0707 -6.3175 26 6 1.9798 -2.7828 -5.6324 27 1 -0.4850 -0.8368 -0.0745 28 1 4.3546 0.5922 0.6431 29 1 3.2937 0.1404 2.0125 30 1 5.9562 -0.2969 2.2003 31 1 4.8203 -1.5617 2.7777 32 1 6.2813 -1.3936 0.0813 33 1 6.1062 -2.8113 1.1645 34 1 4.8841 -1.3944 -1.7926 35 1 5.2039 -3.1417 -1.6804 36 1 2.4301 -2.8307 -1.5628 37 1 1.0663 -2.1516 -3.7860 38 1 2.0789 -5.0167 -4.0742 39 1 1.2152 -4.3579 -2.6641 40 1 -0.7407 -3.8483 -4.1011 41 1 -0.3341 -5.5798 -4.1659 42 1 -0.0985 -2.3424 -5.9886 43 1 0.7662 -3.0014 -7.3982 44 1 2.3144 -1.7797 -5.8966 45 1 2.7207 -3.5115 -5.9613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028162703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:39 Heat of formation + Delta-G solvation = -153.438798 kcal Electronic energy + Delta-G solvation = -28184.442930 eV Core-core repulsion = 24064.358736 eV Total energy + Delta-G solvation = -4120.084193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.99888 -47.99079 -41.16113 -39.60509 -37.99762 -35.50593 -34.74860 -32.27054 -31.76820 -31.61119 -30.37828 -26.58494 -25.47374 -24.31424 -24.01375 -22.59322 -21.54496 -21.22501 -20.57498 -19.50489 -18.46263 -17.95755 -17.89508 -17.29973 -17.24783 -16.83223 -16.68296 -16.01623 -15.45368 -15.18747 -15.15597 -15.04541 -14.95025 -14.52875 -14.34870 -14.11182 -14.01903 -13.86636 -13.47148 -13.33695 -13.19856 -12.95573 -12.83055 -12.76029 -12.66965 -12.60502 -12.27440 -12.09391 -11.96602 -11.78763 -11.60621 -11.33881 -11.19457 -11.16054 -10.72139 -10.63370 -9.90157 -9.06309 -8.45090 -5.39149 1.40868 1.52348 1.65995 1.67251 2.32982 2.54004 2.74616 3.05626 3.17943 3.29389 3.35656 3.37218 3.72577 3.80634 3.86139 3.92774 4.01081 4.01311 4.16895 4.23719 4.27313 4.34130 4.44425 4.57098 4.59701 4.66666 4.74945 4.75680 4.78786 4.81991 4.90455 4.91784 5.01362 5.03413 5.07950 5.15281 5.21053 5.29193 5.47659 5.59594 5.69680 6.24433 6.65877 6.89318 7.30130 7.54421 8.24144 8.99427 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.004082 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.859983 B = 6857.504494 C = 7646.448714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.064 4.064 3 Si 1.092 2.908 4 H -0.280 1.280 5 H -0.316 1.316 6 H -0.280 1.280 7 C -0.289 4.289 8 H 0.064 0.936 9 N -0.620 5.620 10 C 0.092 3.908 11 C -0.118 4.118 12 C -0.115 4.115 13 C 0.141 3.859 14 H 0.051 0.949 15 C 0.116 3.884 16 N -0.703 5.703 17 C 0.510 3.490 18 O -0.592 6.592 19 C -0.109 4.109 20 C -0.101 4.101 21 C -0.152 4.152 22 C 0.284 3.716 23 F -0.209 7.209 24 F -0.209 7.209 25 C -0.152 4.152 26 C -0.090 4.090 27 H 0.254 0.746 28 H 0.023 0.977 29 H 0.039 0.961 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.408 0.592 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 -8.772 -5.150 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.260 4.260 3 Si 0.923 3.077 4 H -0.206 1.206 5 H -0.245 1.245 6 H -0.207 1.207 7 C -0.418 4.418 8 H 0.082 0.918 9 N -0.346 5.346 10 C -0.033 4.033 11 C -0.156 4.156 12 C -0.153 4.153 13 C 0.034 3.966 14 H 0.069 0.931 15 C -0.010 4.010 16 N -0.355 5.355 17 C 0.297 3.703 18 O -0.474 6.474 19 C -0.130 4.130 20 C -0.139 4.139 21 C -0.189 4.189 22 C 0.248 3.752 23 F -0.190 7.190 24 F -0.191 7.191 25 C -0.190 4.190 26 C -0.128 4.128 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.247 0.753 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.542 -7.010 -5.558 10.523 hybrid contribution -0.638 -1.537 -0.109 1.668 sum 4.904 -8.547 -5.667 11.367 Atomic orbital electron populations 1.70999 1.06781 1.29348 1.53306 1.26577 0.96497 1.03269 0.99631 0.83407 0.73519 0.73867 0.76898 1.20640 1.24481 1.20652 1.19817 0.85935 0.94169 1.41881 0.91810 1.45051 1.07516 1.25006 1.57021 1.22166 0.94993 0.93002 0.93113 1.22678 0.96776 0.98580 0.97564 1.22552 0.94773 1.00820 0.97164 1.21504 0.91057 0.92838 0.91192 0.93095 1.21882 0.85281 0.99377 0.94415 1.46230 1.13855 1.69128 1.06265 1.20939 0.90716 0.76051 0.82564 1.90606 1.40103 1.51530 1.65150 1.21416 0.94603 1.00150 0.96831 1.21409 0.96490 0.94200 1.01771 1.22505 0.99687 1.06465 0.90291 1.21320 0.72861 0.88296 0.92702 1.92990 1.45887 1.95184 1.84908 1.92971 1.65352 1.68865 1.91866 1.22528 0.99142 0.93672 1.03669 1.21194 0.96354 1.03477 0.91818 0.93675 0.95960 0.94257 0.88721 0.90531 0.90665 0.88019 0.94413 0.91232 0.75271 0.87900 0.90705 0.89526 0.87302 0.87786 0.87233 0.88055 0.90543 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.40 13.70 21.65 0.30 -56.10 16 2 C -0.06 -3.48 5.45 84.86 0.46 -3.02 16 3 Si 1.09 52.59 24.72 68.60 1.70 54.28 16 4 H -0.28 -12.63 6.83 99.48 0.68 -11.95 16 5 H -0.32 -15.85 7.11 99.48 0.71 -15.14 16 6 H -0.28 -13.00 6.21 99.48 0.62 -12.38 16 7 C -0.29 -14.27 8.74 84.03 0.73 -13.54 16 8 H 0.06 3.20 6.31 -2.91 -0.02 3.18 16 9 N -0.62 -26.21 2.92 -668.27 -1.95 -28.16 16 10 C 0.09 3.55 4.72 86.85 0.41 3.96 16 11 C -0.12 -3.21 7.08 31.99 0.23 -2.98 16 12 C -0.11 -2.93 6.47 31.78 0.21 -2.73 16 13 C 0.14 4.71 3.38 45.34 0.15 4.86 16 14 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 15 C 0.12 4.05 5.22 86.38 0.45 4.50 16 16 N -0.70 -25.23 4.69 -463.06 -2.17 -27.41 16 17 C 0.51 18.32 7.15 87.66 0.63 18.95 16 18 O -0.59 -24.75 15.96 -3.01 -0.05 -24.80 16 19 C -0.11 -3.07 2.53 -11.54 -0.03 -3.10 16 20 C -0.10 -2.35 4.98 30.59 0.15 -2.19 16 21 C -0.15 -3.04 5.45 30.59 0.17 -2.88 16 22 C 0.28 6.34 2.10 30.59 0.06 6.40 16 23 F -0.21 -4.99 17.06 44.97 0.77 -4.23 16 24 F -0.21 -5.34 16.02 44.97 0.72 -4.62 16 25 C -0.15 -3.17 5.46 30.58 0.17 -3.00 16 26 C -0.09 -2.34 4.37 30.58 0.13 -2.20 16 27 H 0.25 14.65 8.73 -92.70 -0.81 13.84 16 28 H 0.02 0.92 5.24 -2.39 -0.01 0.90 16 29 H 0.04 1.65 6.89 -2.39 -0.02 1.63 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 1.86 7.84 -2.39 -0.02 1.84 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.50 8.09 -2.39 -0.02 1.48 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.41 14.78 5.03 -92.71 -0.47 14.31 16 37 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.07 1.78 7.80 -2.39 -0.02 1.76 16 39 H 0.09 1.97 7.56 -2.39 -0.02 1.95 16 40 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.08 2.10 8.10 -2.39 -0.02 2.08 16 45 H 0.07 1.92 7.76 -2.39 -0.02 1.90 16 Total: -1.00 -65.85 349.10 3.61 -62.24 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.37 Total: 25.77 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 3.93 Total: 3.02 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -3.83 Total: -111.67 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.80 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 1.49 Total: -8.85 kcal Atomic # 14 Polarization: 52.59 SS G_CDS: 1.70 Total: 54.28 kcal Total: -65.85 3.61 -62.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028162703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.199 kcal (2) G-P(sol) polarization free energy of solvation -65.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds