Wall clock time and date at job start Tue Mar 31 2020 11:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47340 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.47394 * 119.99871 * 3 2 1 6 6 H 1.48504 * 109.47434 * 239.99994 * 3 2 1 7 7 C 1.38807 * 119.99983 * 180.27082 * 2 1 3 8 8 H 1.08000 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64743 * 346.29721 * 9 7 2 11 11 C 1.54907 * 104.83365 * 204.09566 * 10 9 7 12 12 C 1.55155 * 101.58207 * 322.99455 * 11 10 9 13 13 C 1.47019 * 125.64931 * 166.00169 * 9 7 2 14 14 H 1.08997 * 109.88841 * 59.55020 * 13 9 7 15 15 C 1.53002 * 109.88287 * 298.38841 * 13 9 7 16 16 N 1.46493 * 109.47686 * 175.47615 * 15 13 9 17 17 C 1.34774 * 120.00656 * 184.66247 * 16 15 13 18 18 O 1.21287 * 119.99602 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00345 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.46859 * 300.00156 * 19 17 16 21 21 C 1.53003 * 109.46767 * 180.02562 * 20 19 17 22 22 C 1.53003 * 109.47325 * 59.99672 * 21 20 19 23 23 F 1.39895 * 109.46695 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.46588 * 60.00407 * 22 21 20 25 25 C 1.52994 * 109.47313 * 300.00236 * 22 21 20 26 26 C 1.52998 * 109.46813 * 180.02562 * 19 17 16 27 27 H 0.96999 * 119.99939 * 359.72668 * 1 2 3 28 28 H 1.09000 * 110.37040 * 322.93896 * 10 9 7 29 29 H 1.09009 * 110.36130 * 85.15038 * 10 9 7 30 30 H 1.09000 * 111.00418 * 81.06698 * 11 10 9 31 31 H 1.08999 * 111.00074 * 204.91931 * 11 10 9 32 32 H 1.08999 * 110.71897 * 153.86333 * 12 11 10 33 33 H 1.08998 * 110.71990 * 276.95852 * 12 11 10 34 34 H 1.09004 * 109.46899 * 295.48384 * 15 13 9 35 35 H 1.09009 * 109.46980 * 55.47129 * 15 13 9 36 36 H 0.97005 * 119.99722 * 4.66352 * 16 15 13 37 37 H 1.08999 * 109.46854 * 60.00310 * 19 17 16 38 38 H 1.08999 * 109.47513 * 299.99750 * 20 19 17 39 39 H 1.08999 * 109.47383 * 60.00367 * 20 19 17 40 40 H 1.08999 * 109.46672 * 299.99986 * 21 20 19 41 41 H 1.09003 * 109.47110 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47315 * 300.00072 * 25 22 21 43 43 H 1.08999 * 109.47230 * 179.97438 * 25 22 21 44 44 H 1.09003 * 109.47181 * 299.99944 * 26 19 17 45 45 H 1.08999 * 109.47298 * 60.00410 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6965 1.2126 6 1 3.1040 1.6965 -1.2125 7 6 2.0102 -1.2021 -0.0057 8 1 3.0902 -1.2021 -0.0061 9 7 1.3256 -2.3880 -0.0118 10 6 -0.1121 -2.5515 0.2706 11 6 -0.2587 -4.0189 0.7449 12 6 0.7663 -4.7446 -0.1662 13 6 1.9012 -3.7082 -0.3071 14 1 2.6966 -3.9332 0.4033 15 6 2.4532 -3.7278 -1.7339 16 7 3.1197 -5.0085 -1.9822 17 6 3.7661 -5.2174 -3.1462 18 8 3.7965 -4.3448 -3.9880 19 6 4.4512 -6.5351 -3.4018 20 6 5.5243 -6.7671 -2.3362 21 6 6.2203 -8.1046 -2.5960 22 6 6.8726 -8.0798 -3.9799 23 9 7.5084 -9.3031 -4.2176 24 9 7.8139 -7.0462 -4.0331 25 6 5.7995 -7.8478 -5.0454 26 6 5.1039 -6.5106 -4.7853 27 1 -0.4850 0.8400 0.0040 28 1 -0.4246 -1.8654 1.0578 29 1 -0.6978 -2.3829 -0.6332 30 1 0.0132 -4.1189 1.7957 31 1 -1.2689 -4.3877 0.5675 32 1 1.1294 -5.6550 0.3107 33 1 0.3272 -4.9689 -1.1383 34 1 1.6343 -3.6010 -2.4421 35 1 3.1694 -2.9155 -1.8576 36 1 3.0957 -5.7063 -1.3088 37 1 3.7176 -7.3402 -3.3599 38 1 6.2580 -5.9620 -2.3780 39 1 5.0597 -6.7844 -1.3503 40 1 5.4869 -8.9099 -2.5545 41 1 6.9852 -8.2697 -1.8371 42 1 5.0661 -8.6531 -5.0038 43 1 6.2642 -7.8297 -6.0312 44 1 4.3397 -6.3451 -5.5447 45 1 5.8377 -5.7056 -4.8268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028162704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:43 Heat of formation + Delta-G solvation = -137.748250 kcal Electronic energy + Delta-G solvation = -27251.845457 eV Core-core repulsion = 23132.441657 eV Total energy + Delta-G solvation = -4119.403800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.21252 -47.19888 -40.03709 -37.90126 -37.00875 -34.32754 -32.52074 -31.50601 -30.80831 -29.58212 -28.50131 -25.07486 -24.26676 -23.53004 -22.97518 -20.84501 -20.32356 -19.89566 -19.43767 -17.72347 -17.26243 -17.11363 -16.57292 -16.49923 -15.86315 -15.18152 -14.87180 -14.49241 -14.36794 -14.13206 -13.84562 -13.77739 -13.68713 -13.49973 -13.15001 -13.01002 -12.74064 -12.51241 -12.11190 -12.04571 -11.90236 -11.84172 -11.78209 -11.56921 -11.36650 -11.01761 -10.96578 -10.79122 -10.46830 -10.24739 -10.15168 -9.95495 -9.87741 -9.74611 -9.52756 -8.72857 -8.58624 -6.87256 -5.78560 -3.15437 2.79361 3.33283 3.40821 3.44688 3.45738 3.46063 3.74484 4.02678 4.06056 4.47037 4.47775 4.58111 4.71526 4.81339 4.88430 5.02318 5.23314 5.28430 5.32721 5.36050 5.40221 5.42553 5.46843 5.59509 5.63049 5.66466 5.77221 5.84616 6.00526 6.03634 6.10629 6.19563 6.42475 6.50848 6.58739 6.67794 6.77905 7.02428 7.49104 7.57543 7.74905 7.76893 8.23360 8.44803 9.15256 9.75824 10.42464 11.33027 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019925 B = 0.002891 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.927296 B = 9683.666106 C =10433.960622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.108 3.892 16 N -0.722 5.722 17 C 0.511 3.489 18 O -0.539 6.539 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.155 4.155 22 C 0.286 3.714 23 F -0.205 7.205 24 F -0.197 7.197 25 C -0.157 4.157 26 C -0.100 4.100 27 H 0.254 0.746 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.395 0.605 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.122 -20.039 -4.514 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.373 5.373 17 C 0.296 3.704 18 O -0.416 6.416 19 C -0.133 4.133 20 C -0.150 4.150 21 C -0.193 4.193 22 C 0.249 3.751 23 F -0.186 7.186 24 F -0.179 7.179 25 C -0.195 4.195 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.228 0.772 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.090 -19.113 -5.103 21.373 hybrid contribution 0.596 0.499 0.185 0.800 sum 8.687 -18.614 -4.918 21.122 Atomic orbital electron populations 1.69924 1.05023 1.25453 1.55822 1.24899 0.95683 0.97874 1.01353 0.86223 0.78604 0.83021 0.78071 1.21539 1.21044 1.20913 1.18939 0.90384 0.82196 1.44813 0.90684 1.44490 1.05872 1.00983 1.79962 1.21476 0.84676 0.90233 0.98962 1.23000 0.97445 0.99622 0.98634 1.22619 0.97156 0.96973 0.99760 1.21126 0.94406 0.88083 0.92037 0.94518 1.22250 0.96707 0.83576 0.99164 1.46163 1.54637 1.18501 1.17987 1.20399 0.78911 0.88888 0.82193 1.90726 1.60499 1.45428 1.44941 1.21431 0.98141 0.96811 0.96914 1.21524 0.97886 0.96753 0.98834 1.22511 1.01793 1.00437 0.94573 1.21165 0.83911 0.71673 0.98307 1.93003 1.84371 1.45361 1.95839 1.93013 1.68067 1.59211 1.97563 1.22547 0.97579 1.00725 0.98661 1.21316 1.00743 0.95878 0.95869 0.93530 0.90765 0.95698 0.92288 0.92340 0.92426 0.91868 0.92057 0.91112 0.77210 0.88169 0.90048 0.89680 0.88487 0.89074 0.88695 0.89166 0.89559 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.54 55.49 0.58 -25.88 16 2 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.38 9.72 -15.06 -0.15 -6.53 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.36 3.13 -162.57 -0.51 -14.86 16 10 C 0.17 4.01 5.43 -2.53 -0.01 3.99 16 11 C -0.15 -2.62 7.09 -24.58 -0.17 -2.80 16 12 C -0.13 -2.00 6.08 -24.89 -0.15 -2.15 16 13 C 0.15 2.89 3.22 -66.95 -0.22 2.67 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.01 5.10 -4.04 -0.02 1.99 16 16 N -0.72 -9.93 5.30 -60.29 -0.32 -10.25 16 17 C 0.51 7.25 7.15 -10.99 -0.08 7.17 16 18 O -0.54 -10.25 15.98 5.55 0.09 -10.17 16 19 C -0.11 -1.04 2.53 -91.77 -0.23 -1.27 16 20 C -0.11 -0.89 4.98 -26.73 -0.13 -1.03 16 21 C -0.16 -1.05 5.45 -26.73 -0.15 -1.20 16 22 C 0.29 2.52 2.10 -26.73 -0.06 2.46 16 23 F -0.20 -2.03 17.06 2.25 0.04 -1.99 16 24 F -0.20 -2.23 16.02 2.25 0.04 -2.19 16 25 C -0.16 -1.18 5.45 -26.76 -0.15 -1.33 16 26 C -0.10 -0.97 4.37 -26.75 -0.12 -1.08 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.07 1.94 6.86 -51.93 -0.36 1.59 16 29 H 0.02 0.64 8.08 -51.92 -0.42 0.22 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.98 7.78 -51.93 -0.40 0.57 16 34 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 35 H 0.07 1.54 7.86 -51.92 -0.41 1.14 16 36 H 0.39 4.10 7.66 -40.82 -0.31 3.79 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.80 7.80 -51.93 -0.41 0.39 16 39 H 0.08 0.55 7.56 -51.93 -0.39 0.16 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 45 H 0.08 0.96 7.76 -51.93 -0.40 0.56 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -32.28 359.96 -8.69 -40.98 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.29 Total: 1.14 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.73 Total: 0.79 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.24 Total: -51.00 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.07 Total: -4.19 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.28 -8.69 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028162704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.771 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds