Wall clock time and date at job start Tue Mar 31 2020 10:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99705 * 2 1 4 4 H 1.48501 * 109.46769 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47133 * 300.00356 * 3 2 1 6 6 H 1.48500 * 109.47052 * 59.99998 * 3 2 1 7 7 C 1.38807 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00414 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64518 * 359.96202 * 9 7 2 11 11 C 1.54329 * 107.26839 * 181.09471 * 10 9 7 12 12 C 1.55159 * 102.94340 * 22.19040 * 11 10 9 13 13 H 1.09010 * 111.03332 * 82.58536 * 12 11 10 14 14 C 1.52996 * 111.00542 * 206.42205 * 12 11 10 15 15 N 1.46505 * 109.46998 * 178.65064 * 14 12 11 16 16 C 1.34776 * 119.99811 * 180.02562 * 15 14 12 17 17 O 1.21277 * 120.00138 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99804 * 179.97438 * 16 15 14 19 19 H 1.08992 * 109.47284 * 300.00452 * 18 16 15 20 20 C 1.52996 * 109.46990 * 179.97438 * 18 16 15 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 18 16 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 18 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 F 1.39900 * 109.46764 * 299.99647 * 23 22 21 25 25 F 1.39903 * 109.46814 * 180.02562 * 23 22 21 26 26 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 27 27 C 1.47420 * 125.64852 * 180.02562 * 9 7 2 28 28 H 0.97003 * 120.00130 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.88217 * 300.50926 * 10 9 7 30 30 H 1.08996 * 109.88572 * 61.52670 * 10 9 7 31 31 H 1.08998 * 110.72159 * 263.83341 * 11 10 9 32 32 H 1.09005 * 110.72247 * 140.55458 * 11 10 9 33 33 H 1.09000 * 109.46870 * 58.65297 * 14 12 11 34 34 H 1.09001 * 109.47367 * 298.64890 * 14 12 11 35 35 H 0.96999 * 119.99692 * 0.02562 * 15 14 12 36 36 H 1.09004 * 109.47368 * 60.00232 * 20 18 16 37 37 H 1.09001 * 109.47372 * 300.00388 * 20 18 16 38 38 H 1.09002 * 109.47398 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.47194 * 300.00476 * 21 20 18 40 40 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 41 41 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.47045 * 180.02562 * 26 23 22 43 43 H 1.09001 * 109.47375 * 59.99966 * 26 23 22 44 44 H 1.09003 * 110.36684 * 37.00067 * 27 9 7 45 45 H 1.09000 * 110.37155 * 274.67551 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1374 -2.5327 0.0008 11 6 -0.4483 -4.0441 0.0284 12 6 0.8526 -4.6559 0.6121 13 1 0.8590 -4.5961 1.7006 14 6 1.0373 -6.1008 0.1440 15 7 2.2890 -6.6339 0.6874 16 6 2.6619 -7.8979 0.4051 17 8 1.9609 -8.5942 -0.2983 18 6 3.9497 -8.4462 0.9636 19 1 4.7850 -7.8405 0.6123 20 6 4.1343 -9.8911 0.4956 21 6 5.4415 -10.4479 1.0631 22 6 5.3912 -10.4095 2.5917 23 6 5.2065 -8.9645 3.0598 24 9 6.2791 -8.1877 2.6088 25 9 5.1611 -8.9294 4.4576 26 6 3.8993 -8.4077 2.4923 27 6 1.9336 -3.7311 -0.0005 28 1 -0.4850 0.8401 0.0004 29 1 -0.5567 -2.0518 0.8846 30 1 -0.5553 -2.0824 -0.8995 31 1 -0.6323 -4.4185 -0.9786 32 1 -1.2978 -4.2513 0.6793 33 1 1.0732 -6.1281 -0.9450 34 1 0.2017 -6.7061 0.4954 35 1 2.8494 -6.0771 1.2503 36 1 4.1698 -9.9186 -0.5935 37 1 3.2989 -10.4965 0.8473 38 1 5.5733 -11.4772 0.7293 39 1 6.2772 -9.8426 0.7117 40 1 4.5556 -11.0147 2.9431 41 1 6.3226 -10.8058 2.9961 42 1 3.7680 -7.3782 2.8253 43 1 3.0637 -9.0130 2.8436 44 1 2.8335 -3.7401 0.6145 45 1 2.1659 -4.0424 -1.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028797235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:28 Heat of formation + Delta-G solvation = -137.982109 kcal Electronic energy + Delta-G solvation = -27061.784918 eV Core-core repulsion = 22942.370977 eV Total energy + Delta-G solvation = -4119.413941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.27940 -47.26118 -40.24902 -37.95687 -37.16385 -34.73860 -32.68280 -31.78538 -30.28383 -29.76016 -28.27577 -25.75337 -24.48672 -23.42409 -22.86694 -20.97899 -20.32661 -19.96139 -19.63434 -17.98766 -17.22059 -16.90494 -16.72310 -16.43215 -16.08035 -15.52381 -15.13585 -14.67135 -14.49072 -14.35288 -14.09384 -13.77686 -13.62078 -13.57983 -13.30185 -13.02716 -12.95768 -12.63789 -12.38998 -12.19930 -11.97127 -11.75457 -11.68682 -11.41383 -11.25717 -11.14966 -10.91748 -10.84954 -10.82303 -10.44103 -10.15745 -10.01157 -9.90787 -9.71207 -9.66690 -9.03031 -8.62226 -6.85406 -5.73286 -3.06987 2.49435 3.06330 3.38472 3.41487 3.44019 3.46496 3.68205 3.89904 3.96265 4.43585 4.47381 4.49967 4.58062 4.71704 4.82782 4.92458 4.99692 5.10059 5.20566 5.25897 5.38617 5.38837 5.42072 5.46555 5.51946 5.59519 5.66193 5.77965 5.86047 5.93514 6.01135 6.02585 6.31131 6.39032 6.46500 6.50194 6.64842 6.87688 7.45971 7.54462 7.60888 7.81069 8.14315 8.24080 9.20165 9.80562 10.46289 11.38491 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.002783 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.563407 B =10059.926023 C =10972.184245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.079 0.921 14 C 0.132 3.868 15 N -0.723 5.723 16 C 0.518 3.482 17 O -0.540 6.540 18 C -0.107 4.107 19 H 0.108 0.892 20 C -0.104 4.104 21 C -0.120 4.120 22 C -0.159 4.159 23 C 0.292 3.708 24 F -0.197 7.197 25 F -0.200 7.200 26 C -0.152 4.152 27 C 0.142 3.858 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.402 0.598 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.035 0.965 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 -22.132 5.062 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.374 5.374 16 C 0.303 3.697 17 O -0.417 6.417 18 C -0.129 4.129 19 H 0.126 0.874 20 C -0.142 4.142 21 C -0.157 4.157 22 C -0.197 4.197 23 C 0.256 3.744 24 F -0.178 7.178 25 F -0.181 7.181 26 C -0.190 4.190 27 C 0.016 3.984 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.237 0.763 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.053 0.947 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.937 -22.355 4.569 24.158 hybrid contribution 0.784 1.429 0.460 1.693 sum 8.721 -20.926 5.030 23.222 Atomic orbital electron populations 1.69976 1.04889 1.24932 1.57121 1.24811 0.95734 0.97710 1.02239 0.86045 0.78717 0.83752 0.77252 1.20496 1.21743 1.21741 1.19103 0.90454 0.82426 1.43745 0.90417 1.44488 1.01742 0.99863 1.87179 1.21153 0.84319 0.88166 1.01161 1.22857 0.95399 0.99405 0.99674 1.22623 0.98690 0.92013 1.00515 0.90236 1.21420 0.85033 0.93826 0.98872 1.46133 1.24928 1.13724 1.52580 1.20312 0.86839 0.81762 0.80739 1.90702 1.54505 1.58436 1.38084 1.21317 0.97575 0.99616 0.94349 0.87386 1.21435 0.97570 0.93105 1.02060 1.21553 0.98656 1.02748 0.92768 1.22561 1.05280 0.93266 0.98632 1.21011 0.85782 0.92249 0.75395 1.93014 1.58627 1.77329 1.88819 1.93026 1.96840 1.97323 1.30933 1.22519 0.96488 1.04575 0.95457 1.21558 0.93939 0.86194 0.96723 0.93793 0.93570 0.93847 0.92195 0.91966 0.91290 0.91630 0.76332 0.90041 0.90551 0.89988 0.90670 0.88619 0.89354 0.88725 0.88056 0.94687 0.96325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.01 10.31 55.49 0.57 -26.44 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.27 3.39 -170.09 -0.58 -15.84 16 10 C 0.18 4.23 5.38 -3.06 -0.02 4.21 16 11 C -0.13 -2.40 6.42 -24.89 -0.16 -2.56 16 12 C -0.12 -1.91 3.10 -88.48 -0.27 -2.18 16 13 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 14 C 0.13 1.81 5.12 -4.04 -0.02 1.79 16 15 N -0.72 -8.55 5.30 -60.29 -0.32 -8.87 16 16 C 0.52 6.20 7.15 -10.99 -0.08 6.12 16 17 O -0.54 -8.34 15.98 5.56 0.09 -8.25 16 18 C -0.11 -0.93 2.41 -91.77 -0.22 -1.15 16 19 H 0.11 0.89 7.80 -51.93 -0.41 0.48 16 20 C -0.10 -0.81 4.49 -26.73 -0.12 -0.93 16 21 C -0.12 -0.71 5.80 -26.73 -0.16 -0.86 16 22 C -0.16 -0.97 5.45 -26.73 -0.15 -1.12 16 23 C 0.29 2.43 2.10 -26.73 -0.06 2.37 16 24 F -0.20 -1.96 16.02 2.25 0.04 -1.93 16 25 F -0.20 -2.01 17.06 2.25 0.04 -1.97 16 26 C -0.15 -1.19 4.63 -26.73 -0.12 -1.31 16 27 C 0.14 2.79 6.41 -2.54 -0.02 2.78 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 30 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 31 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 4.16 7.75 -40.82 -0.32 3.84 16 36 H 0.08 0.70 8.10 -51.93 -0.42 0.27 16 37 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.47 7.80 -51.93 -0.41 0.06 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.72 7.56 -51.93 -0.39 0.33 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -32.37 360.59 -8.70 -41.08 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.31 Total: -0.54 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.64 Total: 0.32 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.32 Total: -51.15 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.07 Total: -3.90 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.37 -8.70 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028797235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.907 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds