Wall clock time and date at job start Tue Mar 31 2020 10:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00255 * 2 1 4 4 H 1.48500 * 109.47350 * 240.00259 * 3 2 1 5 5 H 1.48500 * 109.46806 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47110 * 120.00182 * 3 2 1 7 7 C 1.38819 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00272 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99449 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.65303 * 359.97092 * 9 7 2 11 11 C 1.54322 * 107.27223 * 181.07962 * 10 9 7 12 12 C 1.55154 * 102.94204 * 22.19795 * 11 10 9 13 13 H 1.08999 * 111.00353 * 82.56825 * 12 11 10 14 14 C 1.52999 * 111.00486 * 206.41955 * 12 11 10 15 15 N 1.46505 * 109.47057 * 178.64648 * 14 12 11 16 16 C 1.34781 * 119.99550 * 180.02562 * 15 14 12 17 17 O 1.21283 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99369 * 180.02562 * 16 15 14 19 19 H 1.08996 * 109.46915 * 60.00410 * 18 16 15 20 20 C 1.53003 * 109.46584 * 180.02562 * 18 16 15 21 21 C 1.53001 * 109.47074 * 180.02562 * 20 18 16 22 22 C 1.53004 * 109.46858 * 300.00236 * 21 20 18 23 23 C 1.52999 * 109.47485 * 59.99641 * 22 21 20 24 24 F 1.39898 * 109.46875 * 60.00236 * 23 22 21 25 25 F 1.39900 * 109.47394 * 179.97438 * 23 22 21 26 26 C 1.52995 * 109.47092 * 300.00089 * 23 22 21 27 27 C 1.47426 * 125.64487 * 179.97438 * 9 7 2 28 28 H 0.97002 * 120.00454 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.88389 * 300.50462 * 10 9 7 30 30 H 1.09004 * 109.87600 * 61.51420 * 10 9 7 31 31 H 1.08999 * 110.71849 * 140.55494 * 11 10 9 32 32 H 1.09002 * 110.72203 * 263.83177 * 11 10 9 33 33 H 1.08993 * 109.47274 * 298.64896 * 14 12 11 34 34 H 1.09005 * 109.47002 * 58.65139 * 14 12 11 35 35 H 0.96994 * 120.00157 * 0.02562 * 15 14 12 36 36 H 1.09003 * 109.47142 * 299.99835 * 20 18 16 37 37 H 1.09005 * 109.47307 * 60.00261 * 20 18 16 38 38 H 1.09001 * 109.47245 * 59.99550 * 21 20 18 39 39 H 1.08993 * 109.47625 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.47199 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.47095 * 299.99583 * 22 21 20 42 42 H 1.09001 * 109.47348 * 300.00150 * 26 23 22 43 43 H 1.09006 * 109.47149 * 179.97438 * 26 23 22 44 44 H 1.08998 * 110.36718 * 274.68805 * 27 9 7 45 45 H 1.09005 * 110.36600 * 37.01366 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4484 -4.0441 0.0279 12 6 0.8523 -4.6560 0.6118 13 1 0.8581 -4.5959 1.7001 14 6 1.0370 -6.1008 0.1436 15 7 2.2887 -6.6340 0.6871 16 6 2.6615 -7.8981 0.4047 17 8 1.9611 -8.5939 -0.2997 18 6 3.9488 -8.4467 0.9642 19 1 3.9121 -8.4201 2.0532 20 6 4.1341 -9.8911 0.4948 21 6 5.4407 -10.4485 1.0634 22 6 6.6141 -9.5981 0.5726 23 6 6.4288 -8.1537 1.0419 24 9 6.3810 -8.1201 2.4397 25 9 7.5020 -7.3763 0.5937 26 6 5.1222 -7.5965 0.4734 27 6 1.9334 -3.7311 -0.0016 28 1 -0.4851 0.8400 0.0004 29 1 -0.5570 -2.0519 0.8843 30 1 -0.5552 -2.0823 -0.8998 31 1 -1.2979 -4.2514 0.6787 32 1 -0.6324 -4.4183 -0.9792 33 1 0.2014 -6.7062 0.4947 34 1 1.0731 -6.1280 -0.9455 35 1 2.8490 -6.0774 1.2501 36 1 3.2983 -10.4970 0.8448 37 1 4.1710 -9.9174 -0.5943 38 1 5.4034 -10.4223 2.1524 39 1 5.5730 -11.4773 0.7287 40 1 7.5450 -9.9954 0.9773 41 1 6.6514 -9.6243 -0.5165 42 1 5.1594 -7.6227 -0.6157 43 1 4.9899 -6.5675 0.8081 44 1 2.1651 -4.0419 -1.0203 45 1 2.8337 -3.7406 0.6129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028797236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:32 Heat of formation + Delta-G solvation = -137.827479 kcal Electronic energy + Delta-G solvation = -27167.479713 eV Core-core repulsion = 23048.072477 eV Total energy + Delta-G solvation = -4119.407236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.24692 -47.22795 -40.24180 -37.94928 -37.15535 -34.73535 -32.67692 -31.77226 -30.26204 -29.75781 -28.27562 -25.74323 -24.47861 -23.41350 -22.84723 -20.97086 -20.32142 -19.96523 -19.61060 -17.97453 -17.20835 -16.89912 -16.69641 -16.41893 -16.00400 -15.62578 -15.03566 -14.68429 -14.45102 -14.42946 -13.99028 -13.77732 -13.59346 -13.54414 -13.34222 -13.03814 -12.93301 -12.60820 -12.37642 -12.14035 -11.99455 -11.79802 -11.62271 -11.41355 -11.24620 -11.14146 -10.92474 -10.82609 -10.78959 -10.44457 -10.18671 -10.03591 -9.90522 -9.70498 -9.66271 -9.02815 -8.61388 -6.85487 -5.72868 -3.06659 2.49436 3.07562 3.39578 3.43853 3.44363 3.45099 3.71107 3.92713 3.99187 4.44955 4.47797 4.51426 4.59474 4.73740 4.83920 4.94415 5.01590 5.10401 5.20538 5.29185 5.38892 5.40413 5.45473 5.48756 5.51953 5.60175 5.66618 5.77571 5.86088 5.94067 6.01125 6.03027 6.31016 6.39151 6.46017 6.50298 6.64760 6.87607 7.46168 7.53873 7.60957 7.80891 8.14508 8.24435 9.20354 9.80768 10.46604 11.38787 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.003021 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.583898 B = 9264.970937 C =10681.999108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.723 5.723 16 C 0.518 3.482 17 O -0.540 6.540 18 C -0.106 4.106 19 H 0.107 0.893 20 C -0.104 4.104 21 C -0.119 4.119 22 C -0.160 4.160 23 C 0.292 3.708 24 F -0.198 7.198 25 F -0.199 7.199 26 C -0.153 4.153 27 C 0.143 3.857 28 H 0.253 0.747 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.019 0.981 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.686 -21.233 2.983 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.374 5.374 16 C 0.303 3.697 17 O -0.417 6.417 18 C -0.128 4.128 19 H 0.125 0.875 20 C -0.142 4.142 21 C -0.157 4.157 22 C -0.198 4.198 23 C 0.256 3.744 24 F -0.179 7.179 25 F -0.180 7.180 26 C -0.192 4.192 27 C 0.016 3.984 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.237 0.763 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.036 0.964 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.126 -21.445 2.488 23.439 hybrid contribution 0.848 1.450 0.394 1.725 sum 9.974 -19.996 2.882 22.530 Atomic orbital electron populations 1.69949 1.04897 1.25184 1.56910 1.24806 0.95722 0.97696 1.02170 0.86197 0.78461 0.83171 0.77917 1.21151 1.21578 1.21149 1.19011 0.90392 0.82454 1.44073 0.90529 1.44467 1.01729 0.99833 1.87205 1.21152 0.84311 0.88163 1.01152 1.22855 0.95413 0.99405 0.99668 1.22631 0.98685 0.92002 1.00541 0.90208 1.21419 0.85069 0.93833 0.98827 1.46133 1.24938 1.13699 1.52595 1.20323 0.86932 0.81752 0.80665 1.90704 1.54905 1.58324 1.37802 1.21308 0.92013 0.96664 1.02772 0.87532 1.21440 0.97609 0.93155 1.01986 1.21549 0.93003 0.99396 1.01713 1.22565 1.01439 0.92007 1.03775 1.21001 0.85585 0.91994 0.75808 1.93003 1.96782 1.97279 1.30848 1.93033 1.58563 1.77418 1.88996 1.22530 0.91665 1.01194 1.03777 1.21563 0.93930 0.86218 0.96675 0.93678 0.93572 0.93863 0.91962 0.92202 0.91623 0.91302 0.76332 0.90122 0.90486 0.90738 0.90012 0.89363 0.88569 0.87943 0.88602 0.96352 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.31 55.49 0.57 -26.45 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.61 -15.25 3.39 -170.06 -0.58 -15.82 16 10 C 0.18 4.23 5.38 -3.07 -0.02 4.21 16 11 C -0.13 -2.41 6.42 -24.90 -0.16 -2.57 16 12 C -0.12 -1.91 3.11 -88.46 -0.27 -2.19 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 14 C 0.13 1.82 5.12 -4.04 -0.02 1.80 16 15 N -0.72 -8.56 5.30 -60.29 -0.32 -8.88 16 16 C 0.52 6.21 7.16 -10.98 -0.08 6.13 16 17 O -0.54 -8.35 15.98 5.55 0.09 -8.26 16 18 C -0.11 -0.92 2.40 -91.77 -0.22 -1.14 16 19 H 0.11 0.83 7.80 -51.93 -0.41 0.43 16 20 C -0.10 -0.81 4.49 -26.73 -0.12 -0.93 16 21 C -0.12 -0.71 5.80 -26.73 -0.16 -0.86 16 22 C -0.16 -1.02 5.45 -26.73 -0.15 -1.17 16 23 C 0.29 2.56 2.10 -26.73 -0.06 2.50 16 24 F -0.20 -1.99 16.02 2.25 0.04 -1.95 16 25 F -0.20 -2.15 17.06 2.25 0.04 -2.11 16 26 C -0.15 -1.29 4.63 -26.73 -0.12 -1.42 16 27 C 0.14 2.79 6.41 -2.52 -0.02 2.78 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 30 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.03 8.10 -51.93 -0.42 0.60 16 35 H 0.40 4.17 7.75 -40.82 -0.32 3.85 16 36 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.07 0.45 7.80 -51.93 -0.41 0.04 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 0.81 7.56 -51.93 -0.39 0.42 16 44 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -32.32 360.60 -8.70 -41.02 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.31 Total: -0.27 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.64 Total: 0.27 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.32 Total: -51.15 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.07 Total: -4.06 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.32 -8.70 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028797236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.805 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds