Wall clock time and date at job start Tue Mar 31 2020 10:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00255 * 2 1 4 4 H 1.48500 * 109.47350 * 240.00259 * 3 2 1 5 5 H 1.48500 * 109.46806 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47110 * 120.00182 * 3 2 1 7 7 C 1.38819 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00272 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99449 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.65303 * 359.97092 * 9 7 2 11 11 C 1.54322 * 107.27223 * 181.07962 * 10 9 7 12 12 C 1.55154 * 102.94204 * 22.19795 * 11 10 9 13 13 H 1.08999 * 111.00353 * 82.56825 * 12 11 10 14 14 C 1.52999 * 111.00486 * 206.41955 * 12 11 10 15 15 N 1.46505 * 109.47057 * 178.64648 * 14 12 11 16 16 C 1.34781 * 119.99550 * 180.02562 * 15 14 12 17 17 O 1.21283 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99369 * 180.02562 * 16 15 14 19 19 H 1.08996 * 109.46915 * 60.00410 * 18 16 15 20 20 C 1.53003 * 109.46584 * 180.02562 * 18 16 15 21 21 C 1.53001 * 109.47074 * 180.02562 * 20 18 16 22 22 C 1.53004 * 109.46858 * 300.00236 * 21 20 18 23 23 C 1.52999 * 109.47485 * 59.99641 * 22 21 20 24 24 F 1.39898 * 109.46875 * 60.00236 * 23 22 21 25 25 F 1.39900 * 109.47394 * 179.97438 * 23 22 21 26 26 C 1.52995 * 109.47092 * 300.00089 * 23 22 21 27 27 C 1.47426 * 125.64487 * 179.97438 * 9 7 2 28 28 H 0.97002 * 120.00454 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.88389 * 300.50462 * 10 9 7 30 30 H 1.09004 * 109.87600 * 61.51420 * 10 9 7 31 31 H 1.08999 * 110.71849 * 140.55494 * 11 10 9 32 32 H 1.09002 * 110.72203 * 263.83177 * 11 10 9 33 33 H 1.08993 * 109.47274 * 298.64896 * 14 12 11 34 34 H 1.09005 * 109.47002 * 58.65139 * 14 12 11 35 35 H 0.96994 * 120.00157 * 0.02562 * 15 14 12 36 36 H 1.09003 * 109.47142 * 299.99835 * 20 18 16 37 37 H 1.09005 * 109.47307 * 60.00261 * 20 18 16 38 38 H 1.09001 * 109.47245 * 59.99550 * 21 20 18 39 39 H 1.08993 * 109.47625 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.47199 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.47095 * 299.99583 * 22 21 20 42 42 H 1.09001 * 109.47348 * 300.00150 * 26 23 22 43 43 H 1.09006 * 109.47149 * 179.97438 * 26 23 22 44 44 H 1.08998 * 110.36718 * 274.68805 * 27 9 7 45 45 H 1.09005 * 110.36600 * 37.01366 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4484 -4.0441 0.0279 12 6 0.8523 -4.6560 0.6118 13 1 0.8581 -4.5959 1.7001 14 6 1.0370 -6.1008 0.1436 15 7 2.2887 -6.6340 0.6871 16 6 2.6615 -7.8981 0.4047 17 8 1.9611 -8.5939 -0.2997 18 6 3.9488 -8.4467 0.9642 19 1 3.9121 -8.4201 2.0532 20 6 4.1341 -9.8911 0.4948 21 6 5.4407 -10.4485 1.0634 22 6 6.6141 -9.5981 0.5726 23 6 6.4288 -8.1537 1.0419 24 9 6.3810 -8.1201 2.4397 25 9 7.5020 -7.3763 0.5937 26 6 5.1222 -7.5965 0.4734 27 6 1.9334 -3.7311 -0.0016 28 1 -0.4851 0.8400 0.0004 29 1 -0.5570 -2.0519 0.8843 30 1 -0.5552 -2.0823 -0.8998 31 1 -1.2979 -4.2514 0.6787 32 1 -0.6324 -4.4183 -0.9792 33 1 0.2014 -6.7062 0.4947 34 1 1.0731 -6.1280 -0.9455 35 1 2.8490 -6.0774 1.2501 36 1 3.2983 -10.4970 0.8448 37 1 4.1710 -9.9174 -0.5943 38 1 5.4034 -10.4223 2.1524 39 1 5.5730 -11.4773 0.7287 40 1 7.5450 -9.9954 0.9773 41 1 6.6514 -9.6243 -0.5165 42 1 5.1594 -7.6227 -0.6157 43 1 4.9899 -6.5675 0.8081 44 1 2.1651 -4.0419 -1.0203 45 1 2.8337 -3.7406 0.6129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028797236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:31 Heat of formation + Delta-G solvation = -157.389658 kcal Electronic energy + Delta-G solvation = -27168.327993 eV Core-core repulsion = 23048.072477 eV Total energy + Delta-G solvation = -4120.255515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.97571 -47.97399 -41.18882 -39.39140 -38.01041 -36.05496 -34.35633 -32.64062 -31.45783 -30.89312 -29.82482 -27.36288 -25.76527 -24.44881 -23.62077 -22.14722 -21.52804 -21.33148 -20.67654 -18.99477 -18.61353 -17.93482 -17.41380 -17.34449 -17.19993 -16.65587 -16.50729 -16.04078 -15.55931 -15.51958 -15.12972 -14.81106 -14.59856 -14.43517 -14.30097 -14.04231 -13.87994 -13.78967 -13.59255 -13.38916 -13.27029 -13.02775 -12.78415 -12.74218 -12.59619 -12.30957 -12.07267 -11.91100 -11.85498 -11.80069 -11.73052 -11.54179 -11.47912 -11.44478 -10.73055 -10.69664 -10.08072 -8.90168 -7.85412 -5.20951 1.45521 1.48573 1.54838 1.55809 2.14243 2.49308 2.78092 3.08078 3.27694 3.32730 3.35750 3.60636 3.75920 3.80551 3.90409 3.95279 4.02403 4.03266 4.16681 4.22476 4.33944 4.43326 4.45771 4.62365 4.71244 4.72438 4.80345 4.82239 4.91053 4.92410 4.94704 5.05765 5.07860 5.13933 5.19651 5.34366 5.39442 5.45168 5.47379 5.67541 5.77911 6.19981 6.51685 7.10148 7.19908 7.78099 8.42219 9.24867 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.003021 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.583898 B = 9264.970937 C =10681.999108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.122 4.122 12 C -0.097 4.097 13 H 0.088 0.912 14 C 0.144 3.856 15 N -0.719 5.719 16 C 0.519 3.481 17 O -0.575 6.575 18 C -0.097 4.097 19 H 0.120 0.880 20 C -0.103 4.103 21 C -0.111 4.111 22 C -0.157 4.157 23 C 0.287 3.713 24 F -0.206 7.206 25 F -0.213 7.213 26 C -0.152 4.152 27 C 0.138 3.862 28 H 0.246 0.754 29 H 0.012 0.988 30 H 0.003 0.997 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.411 0.589 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.019 0.981 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.111 -22.995 3.572 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.373 4.373 8 H 0.101 0.899 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.161 4.161 12 C -0.116 4.116 13 H 0.107 0.893 14 C 0.020 3.980 15 N -0.370 5.370 16 C 0.307 3.693 17 O -0.454 6.454 18 C -0.118 4.118 19 H 0.138 0.862 20 C -0.140 4.140 21 C -0.149 4.149 22 C -0.195 4.195 23 C 0.251 3.749 24 F -0.187 7.187 25 F -0.194 7.194 26 C -0.190 4.190 27 C 0.013 3.987 28 H 0.056 0.944 29 H 0.030 0.970 30 H 0.022 0.978 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.036 0.964 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.591 -23.234 3.091 25.720 hybrid contribution 0.422 1.986 0.192 2.039 sum 11.013 -21.248 3.283 24.156 Atomic orbital electron populations 1.70181 1.06325 1.25321 1.58266 1.25662 0.96606 1.01083 1.02656 0.85162 0.77145 0.78820 0.78274 1.20397 1.22144 1.20099 1.19443 0.91044 0.83816 1.43041 0.89899 1.44800 1.02507 1.01241 1.87023 1.20922 0.83822 0.91890 0.97625 1.22717 0.97216 0.94911 1.01261 1.22435 0.95962 0.92571 1.00662 0.89329 1.21159 0.86376 0.92181 0.98285 1.46069 1.24441 1.13973 1.52519 1.20821 0.87493 0.81204 0.79828 1.90693 1.56212 1.59139 1.39393 1.21281 0.90153 0.97086 1.03286 0.86249 1.21436 0.98539 0.92407 1.01659 1.21518 0.91556 1.00107 1.01698 1.22603 1.02111 0.90299 1.04466 1.21282 0.85111 0.93189 0.75344 1.92986 1.96786 1.97374 1.31584 1.93005 1.59232 1.78011 1.89127 1.22514 0.91513 1.01075 1.03944 1.21749 0.95341 0.84416 0.97159 0.94439 0.97006 0.97841 0.89614 0.91053 0.90657 0.92202 0.75297 0.90627 0.91138 0.90561 0.88158 0.88369 0.87561 0.87704 0.88748 0.96351 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.64 10.31 21.65 0.22 -57.42 16 2 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 3 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.66 10.28 84.04 0.86 -12.80 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -31.93 3.39 -691.94 -2.35 -34.28 16 10 C 0.18 8.95 5.38 86.73 0.47 9.42 16 11 C -0.12 -4.24 6.42 31.78 0.20 -4.04 16 12 C -0.10 -2.92 3.11 -9.40 -0.03 -2.95 16 13 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 14 C 0.14 3.64 5.12 86.38 0.44 4.08 16 15 N -0.72 -15.45 5.30 -463.04 -2.45 -17.90 16 16 C 0.52 11.48 7.16 87.66 0.63 12.11 16 17 O -0.57 -16.94 15.98 -3.04 -0.05 -16.99 16 18 C -0.10 -1.49 2.40 -11.54 -0.03 -1.51 16 19 H 0.12 1.56 7.80 -2.39 -0.02 1.55 16 20 C -0.10 -1.39 4.49 30.60 0.14 -1.25 16 21 C -0.11 -1.02 5.80 30.60 0.18 -0.84 16 22 C -0.16 -1.62 5.45 30.60 0.17 -1.45 16 23 C 0.29 4.47 2.10 30.59 0.06 4.54 16 24 F -0.21 -3.75 16.02 44.97 0.72 -3.03 16 25 F -0.21 -4.29 17.06 44.97 0.77 -3.52 16 26 C -0.15 -2.29 4.63 30.59 0.14 -2.15 16 27 C 0.14 5.26 6.41 86.86 0.56 5.82 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.01 0.64 7.38 -2.39 -0.02 0.63 16 30 H 0.00 0.19 7.50 -2.38 -0.02 0.17 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.66 8.10 -2.38 -0.02 1.65 16 35 H 0.41 7.51 7.75 -92.71 -0.72 6.79 16 36 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.07 1.06 8.10 -2.38 -0.02 1.04 16 38 H 0.08 0.71 7.80 -2.39 -0.02 0.69 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.09 1.44 7.56 -2.38 -0.02 1.42 16 44 H 0.02 0.72 8.00 -2.39 -0.02 0.70 16 45 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -71.25 360.60 3.41 -67.84 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.27 Total: 11.86 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.26 Total: 5.61 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.58 Total: -109.60 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.05 Total: -16.99 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 1.49 Total: -6.55 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.25 3.41 -67.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028797236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.551 kcal (2) G-P(sol) polarization free energy of solvation -71.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds