Wall clock time and date at job start Tue Mar 31 2020 10:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00044 * 2 1 4 4 H 1.48494 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47083 * 299.99945 * 3 2 1 6 6 H 1.48496 * 109.46941 * 59.99790 * 3 2 1 7 7 C 1.38806 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00106 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.64413 * 359.97226 * 9 7 2 11 11 C 1.54320 * 107.26903 * 178.98450 * 10 9 7 12 12 C 1.55160 * 102.94565 * 337.81144 * 11 10 9 13 13 H 1.09003 * 111.00250 * 277.38718 * 12 11 10 14 14 C 1.52997 * 111.00702 * 153.57247 * 12 11 10 15 15 N 1.46496 * 109.47194 * 174.99742 * 14 12 11 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 20 20 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 21 21 C 1.53002 * 109.46806 * 179.97438 * 20 18 16 22 22 C 1.53006 * 109.46886 * 60.00087 * 21 20 18 23 23 C 1.52997 * 109.46974 * 299.99588 * 22 21 20 24 24 F 1.39905 * 109.47057 * 180.02562 * 23 22 21 25 25 F 1.39900 * 109.47435 * 300.00121 * 23 22 21 26 26 C 1.52996 * 109.47130 * 60.00111 * 18 16 15 27 27 C 1.47420 * 125.65025 * 180.02562 * 9 7 2 28 28 H 0.97008 * 119.99954 * 0.02562 * 1 2 3 29 29 H 1.09009 * 109.88166 * 59.57317 * 10 9 7 30 30 H 1.08998 * 109.88427 * 298.40263 * 10 9 7 31 31 H 1.09000 * 110.72640 * 219.44500 * 11 10 9 32 32 H 1.09000 * 110.72106 * 96.16971 * 11 10 9 33 33 H 1.09002 * 109.47045 * 54.99869 * 14 12 11 34 34 H 1.09001 * 109.47375 * 294.99794 * 14 12 11 35 35 H 0.97005 * 120.00266 * 0.02562 * 15 14 12 36 36 H 1.09002 * 109.47398 * 59.99922 * 20 18 16 37 37 H 1.09001 * 109.47194 * 299.99742 * 20 18 16 38 38 H 1.08998 * 109.47387 * 300.00361 * 21 20 18 39 39 H 1.09001 * 109.47248 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.46866 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47377 * 59.99963 * 22 21 20 42 42 H 1.09001 * 109.46993 * 59.99687 * 26 18 16 43 43 H 1.09000 * 109.47380 * 300.00582 * 26 18 16 44 44 H 1.08994 * 110.36910 * 85.24432 * 27 9 7 45 45 H 1.09003 * 110.36697 * 322.92265 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0006 11 6 -0.4485 -4.0440 -0.0256 12 6 0.8519 -4.6564 -0.6098 13 1 0.8566 -4.5977 -1.6983 14 6 1.0369 -6.1009 -0.1407 15 7 2.2058 -6.6838 -0.8039 16 6 2.5643 -7.9564 -0.5421 17 8 1.9189 -8.6191 0.2422 18 6 3.7671 -8.5559 -1.2239 19 1 3.6177 -8.5411 -2.3036 20 6 3.9521 -10.0004 -0.7548 21 6 5.1729 -10.6092 -1.4476 22 6 6.4189 -9.7946 -1.0939 23 6 6.2339 -8.3501 -1.5631 24 9 7.3734 -7.6054 -1.2403 25 9 6.0418 -8.3308 -2.9487 26 6 5.0127 -7.7409 -0.8703 27 6 1.9334 -3.7311 0.0016 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5576 -2.0525 -0.8833 30 1 -0.5545 -2.0840 0.9022 31 1 -1.2985 -4.2518 -0.6755 32 1 -0.6318 -4.4176 0.9819 33 1 0.1492 -6.6812 -0.3925 34 1 1.1866 -6.1159 0.9389 35 1 2.7223 -6.1537 -1.4309 36 1 3.0646 -10.5808 -1.0071 37 1 4.1013 -10.0155 0.3248 38 1 5.0233 -10.5941 -2.5271 39 1 5.3050 -11.6382 -1.1130 40 1 7.2887 -10.2286 -1.5871 41 1 6.5686 -9.8097 -0.0144 42 1 5.1621 -7.7556 0.2093 43 1 4.8807 -6.7119 -1.2048 44 1 2.1662 -4.0414 1.0202 45 1 2.8330 -3.7409 -0.6138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028797237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:35 Heat of formation + Delta-G solvation = -157.596283 kcal Electronic energy + Delta-G solvation = -27122.758217 eV Core-core repulsion = 23002.493741 eV Total energy + Delta-G solvation = -4120.264475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.97331 -47.97238 -41.18589 -39.38984 -38.01027 -36.05804 -34.36341 -32.64072 -31.45234 -30.89021 -29.84190 -27.35387 -25.76746 -24.43566 -23.61654 -22.12602 -21.59176 -21.33694 -20.66131 -18.98677 -18.61482 -17.93193 -17.42026 -17.33846 -17.22132 -16.66732 -16.48021 -16.01887 -15.55141 -15.52946 -15.12935 -14.80414 -14.58380 -14.43696 -14.29956 -14.05055 -13.87703 -13.79598 -13.59242 -13.41209 -13.26917 -13.04816 -12.77702 -12.74659 -12.64931 -12.30536 -11.98605 -11.89244 -11.86295 -11.79998 -11.73045 -11.55047 -11.48545 -11.44361 -10.73518 -10.71071 -10.07933 -8.90231 -7.85856 -5.21315 1.45585 1.46261 1.55944 1.56627 2.14374 2.48815 2.78071 3.08168 3.27789 3.32643 3.35877 3.60964 3.75273 3.80340 3.89827 3.95107 4.02200 4.04338 4.16769 4.22579 4.34075 4.43511 4.45784 4.62250 4.71517 4.72475 4.81451 4.82413 4.91275 4.92525 4.94659 5.05374 5.07694 5.13962 5.19695 5.33477 5.39271 5.45450 5.48589 5.67621 5.77767 6.19775 6.51927 7.10078 7.20217 7.77786 8.41824 9.24773 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.002953 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.162507 B = 9481.013654 C =10838.826123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.630 5.630 10 C 0.183 3.817 11 C -0.123 4.123 12 C -0.096 4.096 13 H 0.089 0.911 14 C 0.144 3.856 15 N -0.718 5.718 16 C 0.519 3.481 17 O -0.575 6.575 18 C -0.097 4.097 19 H 0.120 0.880 20 C -0.103 4.103 21 C -0.111 4.111 22 C -0.157 4.157 23 C 0.287 3.713 24 F -0.213 7.213 25 F -0.206 7.206 26 C -0.152 4.152 27 C 0.138 3.862 28 H 0.246 0.754 29 H 0.012 0.988 30 H 0.003 0.997 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.411 0.589 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.019 0.981 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 -23.432 -4.532 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.356 5.356 10 C 0.058 3.942 11 C -0.161 4.161 12 C -0.115 4.115 13 H 0.107 0.893 14 C 0.020 3.980 15 N -0.370 5.370 16 C 0.306 3.694 17 O -0.455 6.455 18 C -0.118 4.118 19 H 0.138 0.862 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.195 4.195 23 C 0.251 3.749 24 F -0.194 7.194 25 F -0.187 7.187 26 C -0.190 4.190 27 C 0.013 3.987 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.021 0.979 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.036 0.964 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.200 -23.657 -3.996 26.070 hybrid contribution 0.385 1.981 -0.215 2.029 sum 10.585 -21.676 -4.210 24.487 Atomic orbital electron populations 1.70202 1.06311 1.25145 1.58447 1.25660 0.96622 1.01070 1.02744 0.85019 0.78243 0.79479 0.76662 1.18895 1.21853 1.22102 1.19509 0.91037 0.83787 1.42698 0.89901 1.44822 1.02527 1.01264 1.86983 1.20920 0.83813 0.91906 0.97610 1.22720 0.97219 0.94916 1.01276 1.22426 0.95896 0.92539 1.00688 0.89254 1.21157 0.88406 0.91622 0.96840 1.46070 1.30934 1.13481 1.46495 1.20824 0.85855 0.81286 0.81398 1.90693 1.56093 1.61568 1.37109 1.21279 0.90786 0.96924 1.02807 0.86234 1.21436 0.99204 0.92273 1.01145 1.21519 0.91593 1.00145 1.01625 1.22602 1.01655 0.90464 1.04767 1.21293 0.83318 0.93766 0.76550 1.93007 1.54160 1.79638 1.92566 1.92986 1.95348 1.97416 1.32976 1.22520 0.92030 1.00997 1.03471 1.21764 0.95348 0.84422 0.97162 0.94466 0.96965 0.97859 0.89613 0.91055 0.90704 0.92206 0.75257 0.90650 0.91149 0.90559 0.88180 0.88377 0.87563 0.87708 0.88683 0.96364 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.62 10.31 21.65 0.22 -57.40 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.89 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 7 C -0.24 -13.48 10.28 84.03 0.86 -12.62 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.63 -31.94 3.39 -692.00 -2.35 -34.29 16 10 C 0.18 8.95 5.37 86.73 0.47 9.41 16 11 C -0.12 -4.24 6.42 31.78 0.20 -4.04 16 12 C -0.10 -2.89 3.05 -9.40 -0.03 -2.92 16 13 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 14 C 0.14 3.63 5.13 86.38 0.44 4.07 16 15 N -0.72 -15.24 5.39 -463.07 -2.50 -17.74 16 16 C 0.52 11.39 7.15 87.66 0.63 12.01 16 17 O -0.58 -16.92 15.98 -3.02 -0.05 -16.96 16 18 C -0.10 -1.46 2.40 -11.54 -0.03 -1.49 16 19 H 0.12 1.54 7.80 -2.39 -0.02 1.52 16 20 C -0.10 -1.38 4.49 30.60 0.14 -1.24 16 21 C -0.11 -1.00 5.80 30.60 0.18 -0.83 16 22 C -0.16 -1.59 5.45 30.60 0.17 -1.43 16 23 C 0.29 4.40 2.10 30.61 0.06 4.46 16 24 F -0.21 -4.22 17.06 44.97 0.77 -3.46 16 25 F -0.21 -3.69 16.02 44.97 0.72 -2.97 16 26 C -0.15 -2.23 4.64 30.61 0.14 -2.09 16 27 C 0.14 5.26 6.65 86.86 0.58 5.84 16 28 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 29 H 0.01 0.67 7.38 -2.38 -0.02 0.65 16 30 H 0.00 0.18 7.50 -2.39 -0.02 0.16 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.67 7.96 -2.39 -0.02 1.65 16 35 H 0.41 7.31 7.89 -92.70 -0.73 6.57 16 36 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.07 1.05 8.10 -2.39 -0.02 1.03 16 38 H 0.08 0.70 7.80 -2.39 -0.02 0.68 16 39 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.40 7.56 -2.39 -0.02 1.38 16 44 H 0.02 0.72 7.91 -2.39 -0.02 0.70 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -71.39 360.80 3.38 -68.02 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.25 Total: 11.19 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 4.28 Total: 5.72 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -4.62 Total: -109.42 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.05 Total: -16.96 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 1.49 Total: -6.43 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -71.39 3.38 -68.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028797237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.581 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds