Wall clock time and date at job start Tue Mar 31 2020 11:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00231 * 2 1 4 4 H 1.48501 * 109.47454 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47017 * 300.00669 * 3 2 1 6 6 H 1.48503 * 109.47012 * 59.99957 * 3 2 1 7 7 C 1.38814 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99924 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64635 * 0.04612 * 9 7 2 11 11 C 1.54909 * 104.82723 * 204.08958 * 10 9 7 12 12 C 1.55152 * 101.58552 * 322.99086 * 11 10 9 13 13 H 1.08996 * 110.87468 * 277.06777 * 12 11 10 14 14 C 1.53002 * 110.72147 * 153.86404 * 12 11 10 15 15 N 1.46499 * 109.47125 * 180.02562 * 14 12 11 16 16 C 1.34777 * 119.99824 * 179.97438 * 15 14 12 17 17 O 1.21278 * 120.00191 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99991 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 60.00288 * 18 16 15 20 20 C 1.53001 * 109.46886 * 180.02562 * 19 18 16 21 21 C 1.53002 * 109.46963 * 299.99499 * 20 19 18 22 22 F 1.39905 * 109.47460 * 300.00341 * 21 20 19 23 23 F 1.39898 * 109.47122 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47092 * 60.00194 * 21 20 19 25 25 C 1.53002 * 109.46966 * 180.02562 * 18 16 15 26 26 C 1.47020 * 125.64658 * 180.02562 * 9 7 2 27 27 H 0.97009 * 119.99997 * 359.97438 * 1 2 3 28 28 H 1.08996 * 110.36822 * 322.92672 * 10 9 7 29 29 H 1.09003 * 110.36788 * 85.14912 * 10 9 7 30 30 H 1.09005 * 111.00517 * 204.91522 * 11 10 9 31 31 H 1.08995 * 111.00269 * 81.06866 * 11 10 9 32 32 H 1.09004 * 109.46930 * 60.02625 * 14 12 11 33 33 H 1.09002 * 109.47067 * 300.02708 * 14 12 11 34 34 H 0.96998 * 120.00082 * 0.02562 * 15 14 12 35 35 H 1.09002 * 109.47152 * 300.00060 * 18 16 15 36 36 H 1.09001 * 109.47194 * 299.99742 * 19 18 16 37 37 H 1.08992 * 109.47399 * 59.99914 * 19 18 16 38 38 H 1.09000 * 109.47437 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.47508 * 59.99571 * 20 19 18 40 40 H 1.09001 * 109.47375 * 180.02562 * 24 21 20 41 41 H 1.09002 * 109.47497 * 59.99850 * 24 21 20 42 42 H 1.09002 * 109.47075 * 299.99352 * 25 18 16 43 43 H 1.08996 * 109.47407 * 60.00310 * 25 18 16 44 44 H 1.09002 * 109.88131 * 59.55573 * 26 9 7 45 45 H 1.09001 * 110.00914 * 298.46436 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1416 -2.5331 -0.0010 11 6 -0.4018 -3.9324 0.6104 12 6 0.7783 -4.7524 0.0254 13 1 0.5481 -5.1000 -0.9816 14 6 1.1228 -5.9315 0.9375 15 7 2.2387 -6.6853 0.3606 16 6 2.7168 -7.7735 0.9961 17 8 2.2229 -8.1290 2.0451 18 6 3.8651 -8.5486 0.4030 19 6 5.0837 -7.6330 0.2702 20 6 6.2493 -8.4198 -0.3326 21 6 6.5944 -9.5989 0.5793 22 9 6.9583 -9.1206 1.8427 23 9 7.6606 -10.3180 0.0286 24 6 5.3758 -10.5144 0.7122 25 6 4.2095 -9.7278 1.3150 26 6 1.9317 -3.7274 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5995 -1.7589 0.6147 29 1 -0.5273 -2.4846 -1.0193 30 1 -1.3592 -4.3328 0.2766 31 1 -0.3525 -3.8985 1.6987 32 1 0.2543 -6.5835 1.0322 33 1 1.4063 -5.5588 1.9218 34 1 2.6340 -6.4008 -0.4782 35 1 3.5818 -8.9216 -0.5813 36 1 4.8381 -6.7932 -0.3798 37 1 5.3670 -7.2600 1.2543 38 1 7.1177 -7.7677 -0.4268 39 1 5.9658 -8.7925 -1.3169 40 1 5.6214 -11.3543 1.3622 41 1 5.0922 -10.8871 -0.2720 42 1 4.4927 -9.3551 2.2994 43 1 3.3412 -10.3799 1.4093 44 1 2.5577 -3.8510 0.8832 45 1 2.5302 -3.8659 -0.9009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028830423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:12 Heat of formation + Delta-G solvation = -137.198215 kcal Electronic energy + Delta-G solvation = -26972.442988 eV Core-core repulsion = 22853.063039 eV Total energy + Delta-G solvation = -4119.379949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.24372 -47.22787 -40.23900 -37.95628 -37.11751 -34.72901 -32.61198 -31.53090 -30.84947 -29.66741 -28.18611 -25.66743 -24.17887 -23.58082 -22.95499 -21.00321 -20.38300 -19.90772 -19.52935 -17.76629 -17.28935 -17.16338 -16.78964 -16.58116 -16.01825 -15.42893 -15.02183 -14.66920 -14.43221 -14.21669 -14.03922 -13.76649 -13.66867 -13.53289 -13.26924 -12.95096 -12.77794 -12.54801 -12.49640 -12.11375 -11.94593 -11.79850 -11.71870 -11.63369 -11.51579 -11.10002 -10.98138 -10.84403 -10.52965 -10.46417 -10.15380 -10.03640 -9.92136 -9.73522 -9.52164 -9.00396 -8.68544 -6.87002 -5.68846 -3.10641 2.57058 3.12803 3.37406 3.42077 3.42960 3.45443 3.70007 3.96829 4.00259 4.39620 4.45631 4.50368 4.64892 4.68186 4.82937 4.92902 5.07608 5.19026 5.21176 5.25866 5.36365 5.36639 5.38401 5.49407 5.55436 5.59810 5.66362 5.76779 5.84904 5.93084 6.03527 6.07914 6.30496 6.41029 6.50338 6.55076 6.67908 6.86434 7.47770 7.49321 7.59782 7.82453 8.18950 8.33164 9.18759 9.79810 10.44292 11.35177 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.002686 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.748783 B =10422.359756 C =11534.870029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.723 5.723 16 C 0.516 3.484 17 O -0.542 6.542 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.156 4.156 21 C 0.286 3.714 22 F -0.197 7.197 23 F -0.204 7.204 24 C -0.157 4.157 25 C -0.099 4.099 26 C 0.142 3.858 27 H 0.252 0.748 28 H 0.107 0.893 29 H 0.012 0.988 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.401 0.599 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.024 0.976 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.412 -20.960 -2.202 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.374 5.374 16 C 0.302 3.698 17 O -0.419 6.419 18 C -0.133 4.133 19 C -0.151 4.151 20 C -0.194 4.194 21 C 0.250 3.750 22 F -0.179 7.179 23 F -0.185 7.185 24 C -0.195 4.195 25 C -0.137 4.137 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.235 0.765 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.042 0.958 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 8.051 -20.975 -1.421 22.512 hybrid contribution 0.845 0.965 -0.519 1.384 sum 8.896 -20.010 -1.941 21.984 Atomic orbital electron populations 1.69805 1.04907 1.24695 1.57641 1.24794 0.95736 0.97760 1.02400 0.86004 0.78653 0.83588 0.77277 1.20524 1.21747 1.21694 1.19119 0.90514 0.82478 1.43039 0.90483 1.44508 1.01994 0.99725 1.86822 1.21934 0.84668 0.92522 0.98212 1.23005 0.95535 0.98579 1.00328 1.22448 0.98351 0.94024 0.98592 0.90608 1.21466 0.88233 0.92194 0.97283 1.46106 1.36188 1.28565 1.26571 1.20419 0.83907 0.80727 0.84779 1.90706 1.60215 1.68228 1.22729 1.21434 0.94134 0.96451 1.01288 1.21536 0.92500 0.97790 1.03296 1.22513 1.01024 0.96369 0.99471 1.21162 0.84063 0.90975 0.78841 1.93014 1.92845 1.89233 1.42763 1.93007 1.59964 1.79800 1.85736 1.22560 0.93685 0.98693 1.04603 1.21331 0.97422 0.95670 0.99298 1.21312 0.93466 0.86017 0.97628 0.93749 0.87542 0.96991 0.92121 0.91822 0.91674 0.91233 0.76469 0.88012 0.89490 0.89964 0.88915 0.88437 0.89127 0.88664 0.89932 0.89594 0.95825 0.96515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.09 55.49 0.56 -26.05 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.12 3.39 -170.07 -0.58 -15.70 16 10 C 0.15 3.58 5.89 -2.53 -0.01 3.57 16 11 C -0.14 -2.44 6.53 -24.58 -0.16 -2.60 16 12 C -0.11 -1.82 3.02 -88.79 -0.27 -2.09 16 13 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.13 1.84 4.99 -4.04 -0.02 1.82 16 15 N -0.72 -8.36 5.29 -60.29 -0.32 -8.68 16 16 C 0.52 6.19 7.15 -10.98 -0.08 6.11 16 17 O -0.54 -8.66 15.98 5.56 0.09 -8.57 16 18 C -0.11 -0.91 2.52 -91.77 -0.23 -1.14 16 19 C -0.11 -0.86 4.98 -26.73 -0.13 -1.00 16 20 C -0.16 -1.04 5.45 -26.73 -0.15 -1.18 16 21 C 0.29 2.40 2.10 -26.73 -0.06 2.35 16 22 F -0.20 -2.15 16.03 2.25 0.04 -2.11 16 23 F -0.20 -1.98 17.06 2.25 0.04 -1.94 16 24 C -0.16 -1.06 5.45 -26.71 -0.15 -1.21 16 25 C -0.10 -0.83 4.38 -26.70 -0.12 -0.95 16 26 C 0.14 2.77 6.52 -3.07 -0.02 2.75 16 27 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.11 2.86 5.87 -51.93 -0.31 2.56 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.15 8.05 -51.93 -0.42 0.74 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 34 H 0.40 3.80 7.74 -40.82 -0.32 3.48 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.58 7.56 -51.93 -0.39 0.19 16 37 H 0.08 0.77 7.80 -51.93 -0.41 0.36 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.85 7.76 -51.93 -0.40 0.45 16 43 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 44 H 0.02 0.47 7.77 -51.93 -0.40 0.07 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -32.43 359.76 -8.67 -41.10 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.26 Total: -0.03 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.64 Total: -0.27 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.34 Total: -50.42 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.07 Total: -4.06 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.43 -8.67 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028830423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.098 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds