Wall clock time and date at job start Tue Mar 31 2020 11:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99799 * 2 1 4 4 H 1.48501 * 109.47303 * 239.99868 * 3 2 1 5 5 H 1.48494 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47033 * 120.00011 * 3 2 1 7 7 C 1.38809 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.64437 * 359.95799 * 9 7 2 11 11 C 1.54323 * 107.26880 * 181.09488 * 10 9 7 12 12 C 1.55159 * 102.94301 * 22.19680 * 11 10 9 13 13 H 1.08990 * 111.03943 * 82.58351 * 12 11 10 14 14 C 1.53005 * 111.00326 * 206.42593 * 12 11 10 15 15 N 1.46500 * 109.47094 * 178.64544 * 14 12 11 16 16 C 1.34774 * 119.99881 * 179.97438 * 15 14 12 17 17 O 1.21285 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99942 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47078 * 59.99862 * 18 16 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 F 1.39895 * 109.46948 * 299.99392 * 21 20 19 23 23 F 1.39900 * 109.46972 * 179.97438 * 21 20 19 24 24 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 25 25 C 1.53000 * 109.47083 * 179.97438 * 18 16 15 26 26 C 1.47420 * 125.65174 * 180.02562 * 9 7 2 27 27 H 0.97003 * 119.99862 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.88438 * 300.50798 * 10 9 7 29 29 H 1.09000 * 109.88774 * 61.67973 * 10 9 7 30 30 H 1.08999 * 110.72403 * 263.82816 * 11 10 9 31 31 H 1.09004 * 110.72007 * 140.55575 * 11 10 9 32 32 H 1.09000 * 109.47360 * 58.64350 * 14 12 11 33 33 H 1.09002 * 109.46935 * 298.64375 * 14 12 11 34 34 H 0.96998 * 119.99994 * 359.97438 * 15 14 12 35 35 H 1.09002 * 109.46959 * 299.99950 * 18 16 15 36 36 H 1.08996 * 109.47853 * 300.00179 * 19 18 16 37 37 H 1.09002 * 109.47153 * 60.00207 * 19 18 16 38 38 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 24 21 20 41 41 H 1.09002 * 109.46695 * 59.99734 * 24 21 20 42 42 H 1.08992 * 109.47399 * 299.99938 * 25 18 16 43 43 H 1.09004 * 109.46724 * 60.00424 * 25 18 16 44 44 H 1.09003 * 110.36591 * 36.99407 * 26 9 7 45 45 H 1.09002 * 110.46090 * 274.72103 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0016 10 6 -0.1374 -2.5327 -0.0014 11 6 -0.4483 -4.0441 0.0253 12 6 0.8521 -4.6561 0.6098 13 1 0.8577 -4.5969 1.6981 14 6 1.0371 -6.1008 0.1411 15 7 2.2884 -6.6342 0.6851 16 6 2.6610 -7.8984 0.4032 17 8 1.9605 -8.5943 -0.3011 18 6 3.9479 -8.4473 0.9633 19 6 3.8960 -8.4093 2.4919 20 6 5.2023 -8.9672 3.0606 21 6 5.3865 -10.4121 2.5922 22 9 4.3131 -11.1884 3.0419 23 9 6.5812 -10.9220 3.1118 24 6 5.4383 -10.4501 1.0636 25 6 4.1323 -9.8924 0.4955 26 6 1.9335 -3.7311 -0.0017 27 1 -0.4850 0.8401 0.0004 28 1 -0.5574 -2.0523 0.8823 29 1 -0.5545 -2.0844 -0.9031 30 1 -0.6317 -4.4180 -0.9820 31 1 -1.2983 -4.2516 0.6755 32 1 1.0738 -6.1277 -0.9480 33 1 0.2013 -6.7064 0.4915 34 1 2.8488 -6.0776 1.2481 35 1 4.7840 -7.8421 0.6129 36 1 3.7644 -7.3801 2.8256 37 1 3.0599 -9.0146 2.8423 38 1 5.1652 -8.9405 4.1496 39 1 6.0386 -8.3623 2.7102 40 1 5.5700 -11.4794 0.7300 41 1 6.2747 -9.8452 0.7133 42 1 3.2962 -10.4973 0.8462 43 1 4.1691 -9.9198 -0.5935 44 1 2.8330 -3.7404 0.6139 45 1 2.1680 -4.0431 -1.0195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028830424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:16 Heat of formation + Delta-G solvation = -138.492775 kcal Electronic energy + Delta-G solvation = -26848.068606 eV Core-core repulsion = 22728.632521 eV Total energy + Delta-G solvation = -4119.436085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.27230 -47.25861 -40.24436 -37.95446 -37.13239 -34.73006 -32.60288 -31.55551 -30.86409 -29.66341 -28.21730 -25.66344 -24.18403 -23.60227 -22.97514 -20.99523 -20.32633 -19.96502 -19.59999 -17.78864 -17.30497 -17.19096 -16.73557 -16.59855 -16.01883 -15.50484 -14.89390 -14.62249 -14.45745 -14.32408 -13.97907 -13.80829 -13.64312 -13.57734 -13.31026 -13.07373 -12.83246 -12.53672 -12.39027 -12.15530 -12.04778 -11.93451 -11.75522 -11.63076 -11.42493 -11.11357 -10.93939 -10.80986 -10.54216 -10.45112 -10.19961 -10.04780 -9.91458 -9.70975 -9.66943 -9.00902 -8.63126 -6.87053 -5.74505 -3.08418 2.56685 3.11832 3.37582 3.39752 3.41897 3.43429 3.67828 3.94816 3.98248 4.38159 4.46061 4.48259 4.63055 4.67232 4.81576 4.92751 5.06265 5.17132 5.20121 5.24307 5.34567 5.36374 5.38077 5.50449 5.52885 5.56912 5.65816 5.74044 5.85697 5.91834 6.01648 6.02764 6.30308 6.40869 6.44740 6.49909 6.64318 6.86742 7.48962 7.52102 7.60048 7.79270 8.18321 8.22827 9.18629 9.79115 10.45047 11.37132 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.002471 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.806131 B =11329.784015 C =12100.917293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.132 3.868 15 N -0.723 5.723 16 C 0.517 3.483 17 O -0.542 6.542 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.156 4.156 21 C 0.286 3.714 22 F -0.198 7.198 23 F -0.204 7.204 24 C -0.158 4.158 25 C -0.099 4.099 26 C 0.143 3.857 27 H 0.253 0.747 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.402 0.598 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.034 0.966 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.482 -19.788 5.041 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.374 5.374 16 C 0.302 3.698 17 O -0.420 6.420 18 C -0.134 4.134 19 C -0.150 4.150 20 C -0.194 4.194 21 C 0.250 3.750 22 F -0.179 7.179 23 F -0.185 7.185 24 C -0.196 4.196 25 C -0.137 4.137 26 C 0.017 3.983 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.236 0.764 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.052 0.948 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.898 -20.060 4.547 22.412 hybrid contribution 0.768 1.119 0.393 1.413 sum 9.667 -18.942 4.941 21.832 Atomic orbital electron populations 1.69956 1.04897 1.25194 1.56873 1.24811 0.95726 0.97704 1.02180 0.86196 0.78457 0.83189 0.77886 1.21164 1.21575 1.21166 1.18998 0.90370 0.82455 1.44099 0.90547 1.44470 1.01739 0.99841 1.87205 1.21151 0.84302 0.88180 1.01119 1.22863 0.95446 0.99401 0.99691 1.22616 0.98649 0.92033 1.00486 0.90249 1.21408 0.85165 0.93777 0.98819 1.46098 1.24922 1.13705 1.52654 1.20408 0.87071 0.81690 0.80612 1.90705 1.54728 1.58427 1.38099 1.21441 0.97042 0.98461 0.96479 1.21523 0.97360 1.03013 0.93088 1.22516 1.00682 0.92899 1.03324 1.21161 0.71591 0.88824 0.93442 1.93004 1.56434 1.77577 1.90920 1.93010 1.47551 1.89094 1.88827 1.22550 1.01038 1.04669 0.91341 1.21307 0.96384 0.93905 1.02096 1.21547 0.93908 0.86193 0.96698 0.93664 0.93550 0.93901 0.92200 0.91965 0.91366 0.91682 0.76390 0.87837 0.89583 0.90113 0.88981 0.88335 0.89109 0.88585 0.90005 0.89534 0.94754 0.96375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.31 55.49 0.57 -26.22 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.31 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.61 -15.05 3.39 -170.09 -0.58 -15.63 16 10 C 0.18 4.20 5.37 -3.06 -0.02 4.18 16 11 C -0.14 -2.39 6.42 -24.90 -0.16 -2.55 16 12 C -0.12 -1.86 3.10 -88.48 -0.27 -2.14 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 14 C 0.13 1.79 5.12 -4.04 -0.02 1.77 16 15 N -0.72 -8.24 5.30 -60.29 -0.32 -8.56 16 16 C 0.52 6.10 7.15 -10.99 -0.08 6.02 16 17 O -0.54 -8.52 15.98 5.55 0.09 -8.43 16 18 C -0.11 -0.91 2.53 -91.77 -0.23 -1.14 16 19 C -0.11 -0.77 4.98 -26.73 -0.13 -0.90 16 20 C -0.16 -0.97 5.45 -26.73 -0.15 -1.12 16 21 C 0.29 2.30 2.10 -26.73 -0.06 2.24 16 22 F -0.20 -2.02 16.02 2.25 0.04 -1.99 16 23 F -0.20 -1.93 17.06 2.25 0.04 -1.89 16 24 C -0.16 -1.05 5.45 -26.76 -0.15 -1.20 16 25 C -0.10 -0.82 4.37 -26.76 -0.12 -0.93 16 26 C 0.14 2.74 6.41 -2.54 -0.02 2.73 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 29 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 30 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.40 3.81 7.76 -40.82 -0.32 3.49 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.49 7.56 -51.93 -0.39 0.10 16 37 H 0.08 0.66 7.80 -51.93 -0.41 0.25 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.81 7.76 -51.93 -0.40 0.40 16 43 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -32.50 360.59 -8.71 -41.22 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.32 Total: -0.85 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.65 Total: 0.18 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.32 Total: -50.41 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.07 Total: -3.88 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.50 -8.71 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028830424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.276 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds