Wall clock time and date at job start Tue Mar 31 2020 11:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99799 * 2 1 4 4 H 1.48501 * 109.47303 * 239.99868 * 3 2 1 5 5 H 1.48494 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47033 * 120.00011 * 3 2 1 7 7 C 1.38809 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.64437 * 359.95799 * 9 7 2 11 11 C 1.54323 * 107.26880 * 181.09488 * 10 9 7 12 12 C 1.55159 * 102.94301 * 22.19680 * 11 10 9 13 13 H 1.08990 * 111.03943 * 82.58351 * 12 11 10 14 14 C 1.53005 * 111.00326 * 206.42593 * 12 11 10 15 15 N 1.46500 * 109.47094 * 178.64544 * 14 12 11 16 16 C 1.34774 * 119.99881 * 179.97438 * 15 14 12 17 17 O 1.21285 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99942 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47078 * 59.99862 * 18 16 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 F 1.39895 * 109.46948 * 299.99392 * 21 20 19 23 23 F 1.39900 * 109.46972 * 179.97438 * 21 20 19 24 24 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 25 25 C 1.53000 * 109.47083 * 179.97438 * 18 16 15 26 26 C 1.47420 * 125.65174 * 180.02562 * 9 7 2 27 27 H 0.97003 * 119.99862 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.88438 * 300.50798 * 10 9 7 29 29 H 1.09000 * 109.88774 * 61.67973 * 10 9 7 30 30 H 1.08999 * 110.72403 * 263.82816 * 11 10 9 31 31 H 1.09004 * 110.72007 * 140.55575 * 11 10 9 32 32 H 1.09000 * 109.47360 * 58.64350 * 14 12 11 33 33 H 1.09002 * 109.46935 * 298.64375 * 14 12 11 34 34 H 0.96998 * 119.99994 * 359.97438 * 15 14 12 35 35 H 1.09002 * 109.46959 * 299.99950 * 18 16 15 36 36 H 1.08996 * 109.47853 * 300.00179 * 19 18 16 37 37 H 1.09002 * 109.47153 * 60.00207 * 19 18 16 38 38 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 24 21 20 41 41 H 1.09002 * 109.46695 * 59.99734 * 24 21 20 42 42 H 1.08992 * 109.47399 * 299.99938 * 25 18 16 43 43 H 1.09004 * 109.46724 * 60.00424 * 25 18 16 44 44 H 1.09003 * 110.36591 * 36.99407 * 26 9 7 45 45 H 1.09002 * 110.46090 * 274.72103 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0016 10 6 -0.1374 -2.5327 -0.0014 11 6 -0.4483 -4.0441 0.0253 12 6 0.8521 -4.6561 0.6098 13 1 0.8577 -4.5969 1.6981 14 6 1.0371 -6.1008 0.1411 15 7 2.2884 -6.6342 0.6851 16 6 2.6610 -7.8984 0.4032 17 8 1.9605 -8.5943 -0.3011 18 6 3.9479 -8.4473 0.9633 19 6 3.8960 -8.4093 2.4919 20 6 5.2023 -8.9672 3.0606 21 6 5.3865 -10.4121 2.5922 22 9 4.3131 -11.1884 3.0419 23 9 6.5812 -10.9220 3.1118 24 6 5.4383 -10.4501 1.0636 25 6 4.1323 -9.8924 0.4955 26 6 1.9335 -3.7311 -0.0017 27 1 -0.4850 0.8401 0.0004 28 1 -0.5574 -2.0523 0.8823 29 1 -0.5545 -2.0844 -0.9031 30 1 -0.6317 -4.4180 -0.9820 31 1 -1.2983 -4.2516 0.6755 32 1 1.0738 -6.1277 -0.9480 33 1 0.2013 -6.7064 0.4915 34 1 2.8488 -6.0776 1.2481 35 1 4.7840 -7.8421 0.6129 36 1 3.7644 -7.3801 2.8256 37 1 3.0599 -9.0146 2.8423 38 1 5.1652 -8.9405 4.1496 39 1 6.0386 -8.3623 2.7102 40 1 5.5700 -11.4794 0.7300 41 1 6.2747 -9.8452 0.7133 42 1 3.2962 -10.4973 0.8462 43 1 4.1691 -9.9198 -0.5935 44 1 2.8330 -3.7404 0.6139 45 1 2.1680 -4.0431 -1.0195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028830424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:15 Heat of formation + Delta-G solvation = -158.492147 kcal Electronic energy + Delta-G solvation = -26848.935844 eV Core-core repulsion = 22728.632521 eV Total energy + Delta-G solvation = -4120.303323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.93570 -47.94202 -41.15469 -39.37116 -37.97652 -36.02731 -34.30915 -32.20899 -31.83946 -31.11538 -29.70143 -27.29198 -25.54618 -24.22871 -23.91563 -22.12376 -21.54023 -21.29112 -20.64136 -18.87852 -18.41646 -18.00714 -17.84945 -17.26235 -17.11648 -16.69380 -16.50654 -15.91679 -15.60474 -15.12510 -15.06361 -14.87842 -14.52434 -14.39643 -14.24299 -13.97784 -13.91164 -13.79125 -13.43735 -13.35427 -13.18464 -12.96642 -12.79125 -12.73847 -12.60592 -12.57920 -12.18529 -12.06078 -11.88483 -11.82403 -11.70137 -11.51655 -11.44332 -11.10225 -10.73804 -10.68105 -10.03393 -8.88213 -7.83488 -5.19014 1.47229 1.50283 1.56539 1.66431 2.21233 2.51102 2.83635 3.14301 3.32847 3.35004 3.43783 3.63384 3.77190 3.81083 3.88264 3.99237 4.05131 4.06956 4.09775 4.32732 4.35932 4.47058 4.63262 4.63871 4.67383 4.74320 4.83286 4.84512 4.90064 4.94309 4.98683 5.01941 5.08579 5.10018 5.16997 5.29361 5.40273 5.47505 5.51375 5.68920 5.79436 6.21664 6.60051 7.11772 7.28511 7.80168 8.44436 9.26951 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.002471 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.806131 B =11329.784015 C =12100.917293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.086 0.914 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.095 4.095 13 H 0.091 0.909 14 C 0.144 3.856 15 N -0.715 5.715 16 C 0.515 3.485 17 O -0.585 6.585 18 C -0.105 4.105 19 C -0.108 4.108 20 C -0.151 4.151 21 C 0.275 3.725 22 F -0.216 7.216 23 F -0.213 7.213 24 C -0.151 4.151 25 C -0.096 4.096 26 C 0.139 3.861 27 H 0.246 0.754 28 H 0.012 0.988 29 H 0.002 0.998 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.414 0.586 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.660 -20.357 5.779 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.371 4.371 8 H 0.104 0.896 9 N -0.356 5.356 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.115 4.115 13 H 0.109 0.891 14 C 0.019 3.981 15 N -0.367 5.367 16 C 0.303 3.697 17 O -0.465 6.465 18 C -0.126 4.126 19 C -0.146 4.146 20 C -0.189 4.189 21 C 0.239 3.761 22 F -0.197 7.197 23 F -0.194 7.194 24 C -0.189 4.189 25 C -0.134 4.134 26 C 0.014 3.986 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.020 0.980 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.251 0.749 35 H 0.151 0.849 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 11.122 -20.655 5.305 24.052 hybrid contribution 0.098 1.244 0.136 1.255 sum 11.220 -19.412 5.441 23.072 Atomic orbital electron populations 1.70193 1.06390 1.25270 1.58426 1.25675 0.96585 1.01148 1.02790 0.85155 0.77107 0.78782 0.78314 1.20410 1.22395 1.19936 1.19455 0.91111 0.83720 1.42775 0.89642 1.44808 1.02433 1.01335 1.86996 1.20909 0.83963 0.91797 0.97550 1.22727 0.97377 0.95035 1.01163 1.22415 0.95855 0.92453 1.00736 0.89122 1.21122 0.86554 0.92219 0.98160 1.45989 1.24309 1.13891 1.52524 1.21049 0.87767 0.81175 0.79705 1.90694 1.56305 1.59441 1.40102 1.21470 0.95662 0.98298 0.97153 1.21507 0.97263 1.03824 0.91991 1.22535 1.01024 0.91629 1.03669 1.21572 0.70733 0.89576 0.94205 1.92972 1.57317 1.78237 1.91187 1.92990 1.48020 1.89348 1.89015 1.22529 1.00850 1.05210 0.90323 1.21237 0.96449 0.93962 1.01800 1.21741 0.95415 0.84224 0.97222 0.94514 0.96969 0.98001 0.91262 0.89766 0.92502 0.91128 0.74930 0.84928 0.87781 0.91799 0.88514 0.85900 0.89055 0.86138 0.92329 0.90009 0.92894 0.96464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.19 10.31 21.65 0.22 -56.97 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 3 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.24 -13.17 10.28 84.03 0.86 -12.31 16 8 H 0.09 4.37 7.83 -2.92 -0.02 4.35 16 9 N -0.63 -31.18 3.39 -692.03 -2.35 -33.53 16 10 C 0.18 8.86 5.37 86.73 0.47 9.32 16 11 C -0.12 -4.27 6.42 31.78 0.20 -4.06 16 12 C -0.09 -2.78 3.10 -9.41 -0.03 -2.80 16 13 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 14 C 0.14 3.57 5.12 86.38 0.44 4.01 16 15 N -0.72 -14.28 5.30 -463.05 -2.45 -16.73 16 16 C 0.52 11.09 7.15 87.66 0.63 11.72 16 17 O -0.59 -17.86 15.98 -3.05 -0.05 -17.90 16 18 C -0.10 -1.39 2.53 -11.54 -0.03 -1.42 16 19 C -0.11 -1.17 4.98 30.59 0.15 -1.02 16 20 C -0.15 -1.40 5.45 30.60 0.17 -1.23 16 21 C 0.27 3.89 2.10 30.60 0.06 3.96 16 22 F -0.22 -4.27 16.02 44.97 0.72 -3.55 16 23 F -0.21 -3.63 17.06 44.97 0.77 -2.86 16 24 C -0.15 -1.69 5.45 30.58 0.17 -1.52 16 25 C -0.10 -1.44 4.37 30.58 0.13 -1.31 16 26 C 0.14 5.07 6.41 86.85 0.56 5.63 16 27 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.01 0.66 7.38 -2.39 -0.02 0.64 16 29 H 0.00 0.10 7.51 -2.39 -0.02 0.08 16 30 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16 31 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.41 6.28 7.76 -92.71 -0.72 5.56 16 35 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 0.78 7.56 -2.39 -0.02 0.76 16 37 H 0.06 0.93 7.80 -2.39 -0.02 0.92 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 42 H 0.06 1.15 7.76 -2.39 -0.02 1.13 16 43 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.02 0.65 8.00 -2.39 -0.02 0.63 16 Total: -1.00 -73.08 360.59 3.40 -69.68 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.27 Total: 9.39 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 4.25 Total: 5.52 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -4.58 Total: -107.23 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.90 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 1.49 Total: -6.41 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -73.08 3.40 -69.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028830424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.816 kcal (2) G-P(sol) polarization free energy of solvation -73.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds