Wall clock time and date at job start Tue Mar 31 2020 11:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46923 * 2 1 4 4 C 1.50698 * 109.47211 * 119.99490 * 2 1 3 5 5 O 1.21283 * 119.99633 * 110.88401 * 4 2 1 6 6 N 1.34776 * 120.00478 * 290.89370 * 4 2 1 7 7 C 1.47164 * 120.70664 * 4.66022 * 6 4 2 8 8 C 1.55890 * 107.94754 * 132.41743 * 7 6 4 9 9 H 1.08997 * 112.45920 * 181.85244 * 8 7 6 10 10 C 1.54547 * 108.44316 * 307.13269 * 8 7 6 11 11 C 1.53732 * 104.95464 * 88.28655 * 10 8 7 12 12 C 1.54541 * 104.95161 * 0.02562 * 11 10 8 13 13 H 1.09005 * 112.18144 * 146.28301 * 12 11 10 14 14 C 1.47162 * 120.71091 * 184.64747 * 6 4 2 15 15 N 1.48303 * 106.18022 * 58.78194 * 8 7 6 16 16 C 1.36932 * 128.07624 * 106.44405 * 15 8 7 17 17 H 1.08006 * 119.99642 * 171.37919 * 16 15 8 18 18 C 1.38806 * 120.00426 * 351.37223 * 16 15 8 19 19 N 1.31622 * 119.99559 * 348.89511 * 18 16 15 20 20 Si 1.86801 * 120.00348 * 168.89519 * 18 16 15 21 21 H 1.48492 * 109.46851 * 270.00102 * 20 18 16 22 22 H 1.48500 * 109.47088 * 30.00229 * 20 18 16 23 23 H 1.48504 * 109.47096 * 150.00134 * 20 18 16 24 24 C 1.52998 * 109.47144 * 239.99954 * 2 1 3 25 25 C 1.53000 * 109.47067 * 59.99986 * 24 2 1 26 26 F 1.39905 * 109.47061 * 180.02562 * 24 2 1 27 27 F 1.39896 * 109.47218 * 300.00017 * 24 2 1 28 28 H 1.09001 * 109.46988 * 290.69347 * 1 2 3 29 29 H 1.08999 * 109.46976 * 50.69454 * 1 2 3 30 30 H 1.08997 * 109.46777 * 170.68910 * 1 2 3 31 31 H 1.08999 * 109.46617 * 188.56976 * 3 2 1 32 32 H 1.08996 * 109.47009 * 308.56831 * 3 2 1 33 33 H 1.08995 * 109.47451 * 68.57163 * 3 2 1 34 34 H 1.08996 * 109.75633 * 252.37201 * 7 6 4 35 35 H 1.09000 * 109.74841 * 13.11104 * 7 6 4 36 36 H 1.08997 * 110.36950 * 207.00871 * 10 8 7 37 37 H 1.09005 * 110.36498 * 329.21231 * 10 8 7 38 38 H 1.09004 * 110.42066 * 241.06387 * 11 10 8 39 39 H 1.09002 * 110.20351 * 118.82201 * 11 10 8 40 40 H 1.08998 * 109.74992 * 107.62717 * 14 6 4 41 41 H 1.08997 * 109.79078 * 346.91606 * 14 6 4 42 42 H 0.97005 * 119.99587 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47191 * 60.00082 * 25 24 2 44 44 H 1.09005 * 109.46897 * 180.02562 * 25 24 2 45 45 H 1.08995 * 109.47212 * 299.99666 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.5875 -1.7836 1.1269 6 7 1.8646 -0.1530 2.4461 7 6 1.1044 1.0976 2.6010 8 6 0.0978 0.9054 3.7758 9 1 -0.5295 1.7826 3.9343 10 6 -0.7251 -0.3754 3.5099 11 6 0.0965 -1.5125 4.1387 12 6 1.3454 -0.8215 4.7312 13 1 1.6907 -1.3077 5.6437 14 6 2.4374 -0.7820 3.6469 15 7 0.9139 0.5770 4.9697 16 6 1.1975 1.3764 6.0447 17 1 1.6911 0.9612 6.9110 18 6 0.8509 2.7203 6.0209 19 7 0.4529 3.2774 4.8968 20 14 0.9492 3.7381 7.5843 21 1 -0.3497 3.6713 8.3008 22 1 2.0242 3.2019 8.4572 23 1 1.2512 5.1501 7.2375 24 6 2.0400 -0.7212 -1.2492 25 6 1.5300 0.0000 -2.4985 26 9 3.4391 -0.7217 -1.2489 27 9 1.5737 -2.0402 -1.2492 28 1 -0.3633 0.3631 0.9614 29 1 -0.3633 0.6510 -0.7952 30 1 -0.3633 -1.0141 -0.1663 31 1 3.1192 1.4463 -0.1531 32 1 1.5570 1.9986 -0.8035 33 1 1.8072 1.9103 0.9566 34 1 1.7864 1.9181 2.8237 35 1 0.5566 1.3117 1.6833 36 1 -1.7010 -0.3059 3.9904 37 1 -0.8415 -0.5359 2.4381 38 1 0.3882 -2.2366 3.3779 39 1 -0.4769 -1.9998 4.9272 40 1 3.2861 -0.1965 4.0002 41 1 2.7615 -1.7962 3.4133 42 1 0.2103 4.2165 4.8803 43 1 1.8933 1.0276 -2.4985 44 1 1.8930 -0.5141 -3.3885 45 1 0.4401 0.0000 -2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029566860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:24 Heat of formation + Delta-G solvation = -81.662103 kcal Electronic energy + Delta-G solvation = -29918.066971 eV Core-core repulsion = 25801.095248 eV Total energy + Delta-G solvation = -4116.971722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.73101 -46.69270 -40.46526 -38.00575 -35.94149 -33.70423 -32.48316 -30.92254 -29.66405 -29.31096 -27.45768 -26.42920 -24.90638 -23.99512 -23.57382 -21.23282 -19.78156 -19.37226 -18.79780 -17.21877 -17.17859 -16.52548 -16.16480 -15.69751 -15.27532 -14.99036 -14.56080 -14.25347 -13.85281 -13.74830 -13.48550 -13.31038 -13.20057 -13.04056 -12.82190 -12.74517 -12.61308 -12.43359 -12.15058 -11.91632 -11.76328 -11.73092 -11.66802 -11.30061 -11.22565 -11.00992 -10.90399 -10.82389 -10.43737 -10.38147 -10.06428 -9.86108 -9.58707 -9.56535 -9.24796 -8.79971 -8.08668 -6.93195 -5.89387 -3.22349 3.01331 3.32434 3.37465 3.39542 3.40012 3.81782 4.08524 4.36701 4.45413 4.45752 4.90754 4.93706 4.95011 5.13236 5.27489 5.39278 5.49466 5.54121 5.63306 5.65483 5.65788 5.69123 5.71092 5.73718 5.79573 5.84553 5.92121 6.06595 6.09135 6.21813 6.32209 6.36680 6.51394 6.56955 6.60336 6.69257 6.84025 6.90748 7.17918 7.42981 7.60459 8.00670 8.08779 8.61723 9.00695 9.62574 10.36937 11.22388 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022796 B = 0.004589 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.985543 B = 6100.444594 C = 6476.587511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.120 4.120 3 C -0.171 4.171 4 C 0.518 3.482 5 O -0.547 6.547 6 N -0.585 5.585 7 C 0.083 3.917 8 C 0.160 3.840 9 H 0.134 0.866 10 C -0.139 4.139 11 C -0.124 4.124 12 C 0.135 3.865 13 H 0.077 0.923 14 C 0.103 3.897 15 N -0.586 5.586 16 C -0.219 4.219 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.313 3.687 25 C -0.196 4.196 26 F -0.196 7.196 27 F -0.191 7.191 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.254 0.746 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 -3.177 -11.809 12.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.124 4.124 3 C -0.228 4.228 4 C 0.304 3.696 5 O -0.426 6.426 6 N -0.317 5.317 7 C -0.040 4.040 8 C 0.052 3.948 9 H 0.151 0.849 10 C -0.178 4.178 11 C -0.163 4.163 12 C 0.026 3.974 13 H 0.095 0.905 14 C -0.022 4.022 15 N -0.306 5.306 16 C -0.347 4.347 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.566 5.566 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.218 1.218 24 C 0.276 3.724 25 C -0.254 4.254 26 F -0.177 7.177 27 F -0.172 7.172 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.493 -3.502 -11.700 12.304 hybrid contribution 0.270 0.473 0.745 0.923 sum -1.223 -3.030 -10.954 11.431 Atomic orbital electron populations 1.22300 0.90708 1.03684 1.04975 1.21749 0.99378 0.98273 0.93013 1.22492 1.02208 0.92194 1.05905 1.19949 0.79903 0.85439 0.84298 1.90694 1.44331 1.21400 1.86128 1.48039 1.52452 1.25620 1.05555 1.23502 0.95672 0.84703 1.00108 1.22627 0.91024 0.96460 0.84685 0.84895 1.22613 0.98897 0.97480 0.98773 1.22372 0.97355 0.97446 0.99126 1.21968 0.92507 0.88018 0.94875 0.90486 1.22367 0.96883 0.97645 0.85278 1.45220 1.56314 1.08756 1.20355 1.19076 1.33517 0.89715 0.92418 0.90362 1.24707 1.02195 0.96090 0.97252 1.69737 1.51218 1.11802 1.23874 0.86099 0.77732 0.79405 0.82418 1.21631 1.20741 1.21763 1.20616 0.75745 0.79699 0.96296 1.22868 1.04030 1.02469 0.95998 1.92999 1.30585 1.96561 1.97518 1.93008 1.88175 1.38549 1.97485 0.88775 0.90738 0.91195 0.91483 0.90972 0.87937 0.90169 0.90237 0.92643 0.92838 0.92586 0.92700 0.91953 0.90621 0.93533 0.89012 0.90122 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 7.30 37.16 0.27 -1.67 16 2 C -0.12 -1.73 0.24 -155.66 -0.04 -1.77 16 3 C -0.17 -2.18 7.44 37.16 0.28 -1.91 16 4 C 0.52 9.59 6.25 -10.99 -0.07 9.52 16 5 O -0.55 -11.92 14.35 5.56 0.08 -11.84 16 6 N -0.59 -10.90 2.28 -170.23 -0.39 -11.29 16 7 C 0.08 1.54 3.69 -2.14 -0.01 1.54 16 8 C 0.16 3.31 3.32 -64.58 -0.21 3.09 16 9 H 0.13 3.12 5.94 -51.93 -0.31 2.81 16 10 C -0.14 -2.49 6.18 -25.54 -0.16 -2.65 16 11 C -0.12 -2.23 6.17 -25.54 -0.16 -2.39 16 12 C 0.13 2.66 4.28 -65.64 -0.28 2.38 16 13 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 14 C 0.10 2.00 5.94 -3.19 -0.02 1.98 16 15 N -0.59 -13.37 2.79 -151.40 -0.42 -13.79 16 16 C -0.22 -5.56 10.39 -15.06 -0.16 -5.72 16 17 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 18 C -0.01 -0.16 5.43 -17.43 -0.09 -0.26 16 19 N -0.92 -23.67 10.56 55.49 0.59 -23.08 16 20 Si 0.91 20.64 29.57 -169.99 -5.03 15.62 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 24 C 0.31 4.53 1.16 -26.73 -0.03 4.49 16 25 C -0.20 -1.87 8.70 37.16 0.32 -1.55 16 26 F -0.20 -3.31 15.71 2.25 0.04 -3.27 16 27 F -0.19 -3.21 15.27 2.25 0.03 -3.18 16 28 H 0.09 1.23 3.28 -51.93 -0.17 1.06 16 29 H 0.07 0.67 6.87 -51.93 -0.36 0.31 16 30 H 0.07 0.87 7.55 -51.93 -0.39 0.48 16 31 H 0.07 0.90 7.57 -51.93 -0.39 0.50 16 32 H 0.07 0.69 6.83 -51.93 -0.35 0.33 16 33 H 0.10 1.45 3.95 -51.93 -0.21 1.25 16 34 H 0.08 1.72 7.68 -51.93 -0.40 1.32 16 35 H 0.08 1.25 3.00 -51.93 -0.16 1.10 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.87 5.69 -51.93 -0.30 0.57 16 38 H 0.06 1.00 7.86 -51.93 -0.41 0.60 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.46 7.09 -51.93 -0.37 1.09 16 42 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 43 H 0.09 0.74 6.63 -51.93 -0.34 0.39 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.71 6.65 -51.93 -0.35 0.37 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -29.47 331.79 -6.61 -36.08 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.16 Total: 4.66 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.35 Total: 5.09 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.22 Total: -48.17 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.07 Total: -6.45 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.47 -6.61 -36.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029566860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.579 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds