Wall clock time and date at job start Tue Mar 31 2020 11:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46923 * 2 1 4 4 C 1.50698 * 109.47211 * 119.99490 * 2 1 3 5 5 O 1.21283 * 119.99633 * 110.88401 * 4 2 1 6 6 N 1.34776 * 120.00478 * 290.89370 * 4 2 1 7 7 C 1.47164 * 120.70664 * 4.66022 * 6 4 2 8 8 C 1.55890 * 107.94754 * 132.41743 * 7 6 4 9 9 H 1.08997 * 112.45920 * 181.85244 * 8 7 6 10 10 C 1.54547 * 108.44316 * 307.13269 * 8 7 6 11 11 C 1.53732 * 104.95464 * 88.28655 * 10 8 7 12 12 C 1.54541 * 104.95161 * 0.02562 * 11 10 8 13 13 H 1.09005 * 112.18144 * 146.28301 * 12 11 10 14 14 C 1.47162 * 120.71091 * 184.64747 * 6 4 2 15 15 N 1.48303 * 106.18022 * 58.78194 * 8 7 6 16 16 C 1.36932 * 128.07624 * 106.44405 * 15 8 7 17 17 H 1.08006 * 119.99642 * 171.37919 * 16 15 8 18 18 C 1.38806 * 120.00426 * 351.37223 * 16 15 8 19 19 N 1.31622 * 119.99559 * 348.89511 * 18 16 15 20 20 Si 1.86801 * 120.00348 * 168.89519 * 18 16 15 21 21 H 1.48492 * 109.46851 * 270.00102 * 20 18 16 22 22 H 1.48500 * 109.47088 * 30.00229 * 20 18 16 23 23 H 1.48504 * 109.47096 * 150.00134 * 20 18 16 24 24 C 1.52998 * 109.47144 * 239.99954 * 2 1 3 25 25 C 1.53000 * 109.47067 * 59.99986 * 24 2 1 26 26 F 1.39905 * 109.47061 * 180.02562 * 24 2 1 27 27 F 1.39896 * 109.47218 * 300.00017 * 24 2 1 28 28 H 1.09001 * 109.46988 * 290.69347 * 1 2 3 29 29 H 1.08999 * 109.46976 * 50.69454 * 1 2 3 30 30 H 1.08997 * 109.46777 * 170.68910 * 1 2 3 31 31 H 1.08999 * 109.46617 * 188.56976 * 3 2 1 32 32 H 1.08996 * 109.47009 * 308.56831 * 3 2 1 33 33 H 1.08995 * 109.47451 * 68.57163 * 3 2 1 34 34 H 1.08996 * 109.75633 * 252.37201 * 7 6 4 35 35 H 1.09000 * 109.74841 * 13.11104 * 7 6 4 36 36 H 1.08997 * 110.36950 * 207.00871 * 10 8 7 37 37 H 1.09005 * 110.36498 * 329.21231 * 10 8 7 38 38 H 1.09004 * 110.42066 * 241.06387 * 11 10 8 39 39 H 1.09002 * 110.20351 * 118.82201 * 11 10 8 40 40 H 1.08998 * 109.74992 * 107.62717 * 14 6 4 41 41 H 1.08997 * 109.79078 * 346.91606 * 14 6 4 42 42 H 0.97005 * 119.99587 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47191 * 60.00082 * 25 24 2 44 44 H 1.09005 * 109.46897 * 180.02562 * 25 24 2 45 45 H 1.08995 * 109.47212 * 299.99666 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.5875 -1.7836 1.1269 6 7 1.8646 -0.1530 2.4461 7 6 1.1044 1.0976 2.6010 8 6 0.0978 0.9054 3.7758 9 1 -0.5295 1.7826 3.9343 10 6 -0.7251 -0.3754 3.5099 11 6 0.0965 -1.5125 4.1387 12 6 1.3454 -0.8215 4.7312 13 1 1.6907 -1.3077 5.6437 14 6 2.4374 -0.7820 3.6469 15 7 0.9139 0.5770 4.9697 16 6 1.1975 1.3764 6.0447 17 1 1.6911 0.9612 6.9110 18 6 0.8509 2.7203 6.0209 19 7 0.4529 3.2774 4.8968 20 14 0.9492 3.7381 7.5843 21 1 -0.3497 3.6713 8.3008 22 1 2.0242 3.2019 8.4572 23 1 1.2512 5.1501 7.2375 24 6 2.0400 -0.7212 -1.2492 25 6 1.5300 0.0000 -2.4985 26 9 3.4391 -0.7217 -1.2489 27 9 1.5737 -2.0402 -1.2492 28 1 -0.3633 0.3631 0.9614 29 1 -0.3633 0.6510 -0.7952 30 1 -0.3633 -1.0141 -0.1663 31 1 3.1192 1.4463 -0.1531 32 1 1.5570 1.9986 -0.8035 33 1 1.8072 1.9103 0.9566 34 1 1.7864 1.9181 2.8237 35 1 0.5566 1.3117 1.6833 36 1 -1.7010 -0.3059 3.9904 37 1 -0.8415 -0.5359 2.4381 38 1 0.3882 -2.2366 3.3779 39 1 -0.4769 -1.9998 4.9272 40 1 3.2861 -0.1965 4.0002 41 1 2.7615 -1.7962 3.4133 42 1 0.2103 4.2165 4.8803 43 1 1.8933 1.0276 -2.4985 44 1 1.8930 -0.5141 -3.3885 45 1 0.4401 0.0000 -2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029566860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:23 Heat of formation + Delta-G solvation = -97.883761 kcal Electronic energy + Delta-G solvation = -29918.770395 eV Core-core repulsion = 25801.095248 eV Total energy + Delta-G solvation = -4117.675146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.89945 -47.89140 -41.94400 -39.53874 -37.20404 -35.33036 -34.20283 -32.34215 -31.09278 -30.68364 -28.45887 -27.98145 -26.25305 -25.53941 -25.08002 -22.56846 -21.32539 -20.75195 -20.38844 -18.74516 -18.33072 -17.81329 -17.62481 -17.11327 -16.77584 -16.53262 -16.04695 -15.63928 -15.45747 -15.09669 -14.80119 -14.74200 -14.57988 -14.28750 -14.05536 -13.79872 -13.73554 -13.66417 -13.53273 -13.34166 -13.19090 -13.03367 -12.81570 -12.74520 -12.59371 -12.51445 -12.40956 -12.27113 -11.95240 -11.86716 -11.60968 -11.44595 -11.29904 -11.07153 -10.88624 -10.43098 -9.73552 -8.72237 -7.81837 -5.14939 1.50706 1.53139 1.57679 1.59262 1.98635 2.52380 2.71206 3.11163 3.27141 3.35269 3.42620 3.48868 3.78749 3.97521 4.04284 4.06626 4.10734 4.19339 4.27450 4.37104 4.49101 4.56508 4.63419 4.65246 4.68811 4.74927 4.78495 4.81161 4.81694 4.89619 4.99741 5.02815 5.06112 5.09476 5.24574 5.29662 5.31553 5.39870 5.55083 5.61629 5.84393 6.27107 6.52244 7.11270 7.13260 7.74263 8.51700 9.27794 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022796 B = 0.004589 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.985543 B = 6100.444594 C = 6476.587511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.118 4.118 3 C -0.168 4.168 4 C 0.511 3.489 5 O -0.584 6.584 6 N -0.585 5.585 7 C 0.101 3.899 8 C 0.154 3.846 9 H 0.108 0.892 10 C -0.130 4.130 11 C -0.114 4.114 12 C 0.131 3.869 13 H 0.079 0.921 14 C 0.107 3.893 15 N -0.604 5.604 16 C -0.233 4.233 17 H 0.073 0.927 18 C -0.048 4.048 19 N -0.931 5.931 20 Si 0.967 3.033 21 H -0.290 1.290 22 H -0.280 1.280 23 H -0.295 1.295 24 C 0.298 3.702 25 C -0.188 4.188 26 F -0.216 7.216 27 F -0.209 7.209 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.114 0.886 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.251 0.749 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 -2.724 -13.613 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.122 4.122 3 C -0.224 4.224 4 C 0.299 3.701 5 O -0.465 6.465 6 N -0.316 5.316 7 C -0.022 4.022 8 C 0.047 3.953 9 H 0.125 0.875 10 C -0.169 4.169 11 C -0.153 4.153 12 C 0.024 3.976 13 H 0.097 0.903 14 C -0.018 4.018 15 N -0.326 5.326 16 C -0.362 4.362 17 H 0.091 0.909 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.797 3.203 21 H -0.217 1.217 22 H -0.205 1.205 23 H -0.222 1.222 24 C 0.261 3.739 25 C -0.245 4.245 26 F -0.198 7.198 27 F -0.190 7.190 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.878 -3.059 -13.514 14.152 hybrid contribution 0.761 0.282 1.323 1.552 sum -2.117 -2.776 -12.191 12.681 Atomic orbital electron populations 1.22343 0.88475 1.04637 1.05957 1.21856 1.01039 0.98506 0.90758 1.22492 1.02038 0.91309 1.06605 1.20793 0.78965 0.85095 0.85198 1.90671 1.45897 1.23209 1.86713 1.48060 1.52384 1.25520 1.05634 1.23280 0.94572 0.83490 1.00858 1.22597 0.91324 0.96707 0.84676 0.87490 1.22543 0.98410 0.95736 1.00193 1.22278 0.96423 0.97277 0.99369 1.22092 0.93385 0.86974 0.95189 0.90269 1.22198 0.96370 0.97333 0.85933 1.45383 1.56954 1.09672 1.20560 1.19269 1.33391 0.90354 0.93182 0.90928 1.25289 1.02649 0.96898 0.99411 1.69880 1.51727 1.11566 1.24764 0.85251 0.77393 0.77772 0.79846 1.21745 1.20536 1.22212 1.21289 0.74809 0.79294 0.98468 1.22926 1.05475 1.02796 0.93340 1.92957 1.32484 1.96606 1.97708 1.92970 1.88253 1.40143 1.97668 0.89852 0.86409 0.91439 0.92557 0.86638 0.89601 0.93407 0.86886 0.92254 0.90727 0.92360 0.91652 0.93810 0.90634 0.93981 0.87002 0.89270 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 7.30 71.98 0.53 -2.70 16 2 C -0.12 -3.12 0.24 -52.93 -0.01 -3.14 16 3 C -0.17 -3.84 7.44 71.98 0.54 -3.31 16 4 C 0.51 18.62 6.25 87.66 0.55 19.17 16 5 O -0.58 -25.57 14.35 -3.04 -0.04 -25.61 16 6 N -0.59 -21.77 2.28 -810.87 -1.85 -23.62 16 7 C 0.10 3.71 3.69 87.25 0.32 4.03 16 8 C 0.15 6.35 3.32 46.17 0.15 6.50 16 9 H 0.11 5.05 5.94 -2.39 -0.01 5.03 16 10 C -0.13 -4.48 6.18 31.37 0.19 -4.29 16 11 C -0.11 -4.00 6.17 31.37 0.19 -3.81 16 12 C 0.13 5.22 4.28 45.49 0.19 5.42 16 13 H 0.08 3.05 8.14 -2.38 -0.02 3.04 16 14 C 0.11 4.24 5.94 86.57 0.51 4.75 16 15 N -0.60 -27.91 2.79 -632.90 -1.76 -29.67 16 16 C -0.23 -12.01 10.39 84.03 0.87 -11.14 16 17 H 0.07 3.71 7.85 -2.91 -0.02 3.69 16 18 C -0.05 -2.47 5.43 84.86 0.46 -2.01 16 19 N -0.93 -48.49 10.56 21.65 0.23 -48.26 16 20 Si 0.97 42.79 29.57 68.60 2.03 44.82 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.30 -13.18 7.11 99.48 0.71 -12.47 16 24 C 0.30 7.94 1.16 30.59 0.04 7.97 16 25 C -0.19 -2.80 8.70 71.98 0.63 -2.17 16 26 F -0.22 -7.13 15.71 44.97 0.71 -6.43 16 27 F -0.21 -6.74 15.27 44.97 0.69 -6.05 16 28 H 0.08 1.90 3.28 -2.39 -0.01 1.89 16 29 H 0.12 1.42 6.87 -2.39 -0.02 1.40 16 30 H 0.07 1.46 7.55 -2.39 -0.02 1.44 16 31 H 0.06 1.42 7.57 -2.39 -0.02 1.40 16 32 H 0.12 1.64 6.83 -2.39 -0.02 1.62 16 33 H 0.09 2.29 3.95 -2.39 -0.01 2.28 16 34 H 0.05 2.08 7.68 -2.39 -0.02 2.07 16 35 H 0.11 3.36 3.00 -2.39 -0.01 3.36 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.25 5.69 -2.38 -0.01 2.23 16 38 H 0.06 2.02 7.86 -2.38 -0.02 2.00 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.08 2.99 7.09 -2.39 -0.02 2.97 16 42 H 0.25 12.79 8.31 -92.70 -0.77 12.02 16 43 H 0.11 1.22 6.63 -2.39 -0.02 1.20 16 44 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.12 1.16 6.65 -2.39 -0.02 1.15 16 Total: -1.00 -65.82 331.79 6.18 -59.64 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 1.02 Total: 19.90 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 5.16 Total: 15.28 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -3.38 Total: -101.55 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.04 Total: -25.61 kcal Atomic # 9 Polarization: -13.87 SS G_CDS: 1.39 Total: -12.48 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -65.82 6.18 -59.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029566860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.242 kcal (2) G-P(sol) polarization free energy of solvation -65.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds