Wall clock time and date at job start Tue Mar 31 2020 11:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99636 * 2 1 4 4 H 1.48494 * 109.47301 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.46831 * 120.00338 * 3 2 1 6 6 H 1.48501 * 109.47041 * 239.99995 * 3 2 1 7 7 C 1.38808 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00049 * 204.82128 * 7 2 1 9 9 N 1.36938 * 120.00418 * 24.81992 * 7 2 1 10 10 C 1.43429 * 120.53699 * 211.40858 * 9 7 2 11 11 C 1.54401 * 116.38850 * 271.72628 * 10 9 7 12 12 C 1.54843 * 110.07009 * 318.65074 * 11 10 9 13 13 C 1.50128 * 110.81950 * 321.07545 * 12 11 10 14 14 C 1.52522 * 105.41096 * 97.67983 * 13 12 11 15 15 H 1.08993 * 108.40769 * 31.75141 * 14 13 12 16 16 N 1.46507 * 108.51808 * 149.35459 * 14 13 12 17 17 C 1.34778 * 119.99776 * 209.71697 * 16 14 13 18 18 O 1.21277 * 120.00214 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99980 * 180.02562 * 17 16 14 20 20 C 1.52997 * 109.47377 * 180.02562 * 19 17 16 21 21 C 1.53784 * 113.61109 * 274.13667 * 20 19 17 22 22 C 1.53960 * 87.01705 * 220.04673 * 21 20 19 23 23 F 1.39897 * 113.53639 * 270.81314 * 22 21 20 24 24 F 1.39900 * 113.74661 * 139.94340 * 22 21 20 25 25 C 1.53780 * 87.11310 * 25.36021 * 22 21 20 26 26 C 1.46235 * 114.27939 * 270.59096 * 14 13 12 27 27 H 0.96998 * 119.99465 * 185.76947 * 1 2 3 28 28 H 1.09000 * 108.16338 * 33.30511 * 10 9 7 29 29 H 1.08999 * 108.15809 * 149.87324 * 10 9 7 30 30 H 1.09007 * 109.44713 * 198.43903 * 11 10 9 31 31 H 1.08994 * 109.24103 * 78.73535 * 11 10 9 32 32 H 1.08998 * 109.21076 * 200.72710 * 12 11 10 33 33 H 1.09005 * 109.20875 * 81.42191 * 12 11 10 34 34 H 1.08999 * 110.24398 * 338.71041 * 13 12 11 35 35 H 1.08996 * 110.25175 * 216.65497 * 13 12 11 36 36 H 0.96998 * 120.00206 * 29.72278 * 16 14 13 37 37 H 1.09006 * 109.46914 * 299.99859 * 19 17 16 38 38 H 1.08996 * 109.47390 * 59.99789 * 19 17 16 39 39 H 1.09004 * 112.84855 * 45.32672 * 20 19 17 40 40 H 1.08993 * 113.61652 * 334.56134 * 21 20 19 41 41 H 1.08997 * 113.61805 * 105.47223 * 21 20 19 42 42 H 1.08994 * 113.61743 * 220.08803 * 25 22 21 43 43 H 1.09002 * 113.61398 * 89.18248 * 25 22 21 44 44 H 1.08997 * 109.85289 * 298.90639 * 26 14 13 45 45 H 1.09004 * 109.90672 * 177.95085 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0155 -1.2455 0.3921 9 7 1.4206 -2.3331 -0.4988 10 6 1.7437 -3.6219 0.0413 11 6 2.9487 -4.3494 -0.5931 12 6 2.9253 -4.1744 -2.1315 13 6 1.5211 -4.2550 -2.6563 14 6 1.0639 -2.8086 -2.8147 15 1 1.9316 -2.1990 -3.0665 16 7 0.1112 -2.7406 -3.9256 17 6 0.0093 -1.6138 -4.6580 18 8 0.7058 -0.6559 -4.3970 19 6 -0.9711 -1.5437 -5.8003 20 6 -0.8867 -0.1663 -6.4611 21 6 -1.7679 0.8967 -5.7841 22 6 -2.1065 1.4011 -7.1987 23 9 -1.2178 2.3717 -7.6733 24 9 -3.4472 1.7664 -7.3607 25 6 -1.7906 -0.0192 -7.6965 26 6 0.4298 -2.2446 -1.6238 27 1 -0.4849 -0.8358 0.0844 28 1 1.9468 -3.5031 1.1056 29 1 0.8682 -4.2629 -0.0624 30 1 2.9012 -5.4109 -0.3495 31 1 3.8723 -3.9286 -0.1957 32 1 3.5255 -4.9597 -2.5910 33 1 3.3491 -3.2035 -2.3885 34 1 0.8817 -4.7770 -1.9444 35 1 1.5073 -4.7628 -3.6207 36 1 -0.4462 -3.5066 -4.1340 37 1 -0.7302 -2.3134 -6.5336 38 1 -1.9809 -1.7047 -5.4230 39 1 0.1396 0.1601 -6.6296 40 1 -2.6236 0.4805 -5.2526 41 1 -1.2055 1.6142 -5.1867 42 1 -1.2465 -0.0401 -8.6406 43 1 -2.6525 -0.6864 -7.6886 44 1 -0.4646 -2.8158 -1.3750 45 1 0.1650 -1.2024 -1.8026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034277456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:11 Heat of formation + Delta-G solvation = -98.261542 kcal Electronic energy + Delta-G solvation = -27816.054949 eV Core-core repulsion = 23698.363421 eV Total energy + Delta-G solvation = -4117.691528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.84941 -47.18878 -39.95604 -38.45859 -37.28363 -34.41799 -33.53106 -31.08546 -30.58767 -29.18290 -26.35839 -26.07612 -24.36862 -23.78111 -22.65124 -20.45009 -20.17696 -19.85249 -19.05332 -17.51412 -17.18328 -16.89017 -16.62694 -16.25920 -15.80897 -15.34605 -14.77945 -14.53801 -14.28469 -14.06224 -13.67367 -13.61125 -13.54341 -13.48542 -13.27592 -12.91240 -12.64662 -12.56967 -12.39022 -12.07990 -11.59963 -11.42971 -11.36122 -11.24562 -10.97446 -10.74074 -10.65862 -10.48963 -10.42316 -10.15845 -10.04126 -9.94832 -9.75199 -9.43988 -9.24013 -8.61607 -8.29984 -6.82916 -6.03460 -3.24845 3.01353 3.37585 3.45217 3.55038 3.63629 3.72917 3.77554 4.17128 4.25060 4.31748 4.66463 4.91156 5.07609 5.15379 5.20228 5.25417 5.28560 5.32672 5.37029 5.49021 5.53256 5.55771 5.57388 5.70150 5.84074 5.88468 5.95699 5.98632 6.15023 6.17626 6.29771 6.33470 6.59881 6.69748 6.70448 6.80401 6.86495 6.93832 7.00868 7.30269 7.88002 8.11694 8.59072 8.64559 9.16063 9.85792 10.32578 11.23645 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.004093 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.367970 B = 6839.781115 C = 8299.455853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.013 4.013 3 Si 1.059 2.941 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.353 4.353 8 H 0.053 0.947 9 N -0.584 5.584 10 C 0.157 3.843 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.119 4.119 14 C 0.132 3.868 15 H 0.086 0.914 16 N -0.732 5.732 17 C 0.504 3.496 18 O -0.525 6.525 19 C -0.128 4.128 20 C -0.087 4.087 21 C -0.158 4.158 22 C 0.251 3.749 23 F -0.180 7.180 24 F -0.195 7.195 25 C -0.161 4.161 26 C 0.124 3.876 27 H 0.267 0.733 28 H 0.039 0.961 29 H 0.023 0.977 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.391 0.609 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.022 0.978 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -7.796 -14.247 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.216 4.216 3 Si 0.888 3.112 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.482 4.482 8 H 0.071 0.929 9 N -0.306 5.306 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.145 4.145 13 C -0.157 4.157 14 C 0.028 3.972 15 H 0.104 0.896 16 N -0.385 5.385 17 C 0.289 3.711 18 O -0.400 6.400 19 C -0.168 4.168 20 C -0.105 4.105 21 C -0.196 4.196 22 C 0.214 3.786 23 F -0.161 7.161 24 F -0.175 7.175 25 C -0.199 4.199 26 C -0.001 4.001 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.223 0.777 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.130 0.870 44 H 0.041 0.959 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.830 -5.346 -14.091 15.550 hybrid contribution -0.018 -1.966 -0.124 1.970 sum -3.848 -7.312 -14.215 16.442 Atomic orbital electron populations 1.70792 1.06759 1.30109 1.46792 1.25775 0.96387 1.01427 0.98001 0.83626 0.75064 0.76305 0.76155 1.21098 1.22057 1.21818 1.19815 0.97605 0.88823 1.41960 0.92931 1.43835 1.49640 1.01691 1.35471 1.20230 0.93804 0.87270 0.95850 1.22822 1.01575 0.98893 0.95265 1.21295 0.95515 1.01369 0.96278 1.21314 0.98188 0.95970 1.00255 1.20968 0.93089 0.96235 0.86937 0.89639 1.46509 1.42517 1.15688 1.33744 1.20505 0.84096 0.83131 0.83410 1.90784 1.44412 1.35445 1.69350 1.21607 1.00255 0.98011 0.96975 1.22137 1.00080 0.94443 0.93868 1.24200 1.01505 0.99525 0.94330 1.22198 0.72121 0.85865 0.98382 1.93015 1.67505 1.65871 1.89736 1.92995 1.34518 1.93471 1.96558 1.24177 1.01803 0.93484 1.00445 1.20775 0.91007 1.02343 0.85994 0.92221 0.94285 0.95876 0.93199 0.92896 0.93766 0.91546 0.91220 0.92244 0.77663 0.88615 0.88660 0.86845 0.87111 0.88090 0.88883 0.87022 0.95948 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.30 12.25 55.49 0.68 -26.62 16 2 C -0.01 -0.37 4.77 -17.43 -0.08 -0.45 16 3 Si 1.06 26.48 29.99 -169.99 -5.10 21.38 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.35 -9.91 9.46 -15.06 -0.14 -10.05 16 8 H 0.05 1.50 7.94 -52.48 -0.42 1.08 16 9 N -0.58 -14.32 2.38 -175.41 -0.42 -14.74 16 10 C 0.16 3.25 5.13 -4.93 -0.03 3.23 16 11 C -0.14 -2.50 6.40 -25.03 -0.16 -2.66 16 12 C -0.11 -1.75 5.65 -27.19 -0.15 -1.91 16 13 C -0.12 -1.82 5.25 -28.40 -0.15 -1.97 16 14 C 0.13 2.45 2.01 -71.39 -0.14 2.31 16 15 H 0.09 1.92 6.22 -51.93 -0.32 1.60 16 16 N -0.73 -10.78 4.87 -57.21 -0.28 -11.06 16 17 C 0.50 7.91 7.74 -10.98 -0.09 7.83 16 18 O -0.52 -11.11 15.32 5.56 0.09 -11.03 16 19 C -0.13 -1.31 5.52 -27.88 -0.15 -1.46 16 20 C -0.09 -0.96 3.09 -89.81 -0.28 -1.24 16 21 C -0.16 -1.95 7.44 -25.82 -0.19 -2.14 16 22 C 0.25 2.97 3.28 -25.83 -0.08 2.88 16 23 F -0.18 -2.47 17.38 2.25 0.04 -2.44 16 24 F -0.19 -2.48 17.42 2.25 0.04 -2.44 16 25 C -0.16 -1.40 7.43 -25.92 -0.19 -1.59 16 26 C 0.12 2.81 4.10 -5.20 -0.02 2.79 16 27 H 0.27 8.06 7.02 -40.82 -0.29 7.77 16 28 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 29 H 0.02 0.44 6.89 -51.93 -0.36 0.09 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.27 6.82 -51.93 -0.35 0.92 16 34 H 0.07 1.06 6.28 -51.93 -0.33 0.73 16 35 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 36 H 0.39 4.22 8.61 -40.82 -0.35 3.86 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.80 7.88 -51.93 -0.41 0.39 16 39 H 0.11 1.47 7.73 -51.93 -0.40 1.06 16 40 H 0.11 1.23 7.92 -51.93 -0.41 0.82 16 41 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.11 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 45 H 0.10 2.64 5.79 -51.93 -0.30 2.34 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -33.37 358.41 -8.36 -41.73 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.95 Total: 4.26 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -1.86 Total: -4.45 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.02 Total: -52.42 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.10 Total: 21.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.37 -8.36 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034277456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.536 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds