Wall clock time and date at job start Tue Mar 31 2020 11:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99636 * 2 1 4 4 H 1.48494 * 109.47301 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.46831 * 120.00338 * 3 2 1 6 6 H 1.48501 * 109.47041 * 239.99995 * 3 2 1 7 7 C 1.38808 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00049 * 204.82128 * 7 2 1 9 9 N 1.36938 * 120.00418 * 24.81992 * 7 2 1 10 10 C 1.43429 * 120.53699 * 211.40858 * 9 7 2 11 11 C 1.54401 * 116.38850 * 271.72628 * 10 9 7 12 12 C 1.54843 * 110.07009 * 318.65074 * 11 10 9 13 13 C 1.50128 * 110.81950 * 321.07545 * 12 11 10 14 14 C 1.52522 * 105.41096 * 97.67983 * 13 12 11 15 15 H 1.08993 * 108.40769 * 31.75141 * 14 13 12 16 16 N 1.46507 * 108.51808 * 149.35459 * 14 13 12 17 17 C 1.34778 * 119.99776 * 209.71697 * 16 14 13 18 18 O 1.21277 * 120.00214 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99980 * 180.02562 * 17 16 14 20 20 C 1.52997 * 109.47377 * 180.02562 * 19 17 16 21 21 C 1.53784 * 113.61109 * 274.13667 * 20 19 17 22 22 C 1.53960 * 87.01705 * 220.04673 * 21 20 19 23 23 F 1.39897 * 113.53639 * 270.81314 * 22 21 20 24 24 F 1.39900 * 113.74661 * 139.94340 * 22 21 20 25 25 C 1.53780 * 87.11310 * 25.36021 * 22 21 20 26 26 C 1.46235 * 114.27939 * 270.59096 * 14 13 12 27 27 H 0.96998 * 119.99465 * 185.76947 * 1 2 3 28 28 H 1.09000 * 108.16338 * 33.30511 * 10 9 7 29 29 H 1.08999 * 108.15809 * 149.87324 * 10 9 7 30 30 H 1.09007 * 109.44713 * 198.43903 * 11 10 9 31 31 H 1.08994 * 109.24103 * 78.73535 * 11 10 9 32 32 H 1.08998 * 109.21076 * 200.72710 * 12 11 10 33 33 H 1.09005 * 109.20875 * 81.42191 * 12 11 10 34 34 H 1.08999 * 110.24398 * 338.71041 * 13 12 11 35 35 H 1.08996 * 110.25175 * 216.65497 * 13 12 11 36 36 H 0.96998 * 120.00206 * 29.72278 * 16 14 13 37 37 H 1.09006 * 109.46914 * 299.99859 * 19 17 16 38 38 H 1.08996 * 109.47390 * 59.99789 * 19 17 16 39 39 H 1.09004 * 112.84855 * 45.32672 * 20 19 17 40 40 H 1.08993 * 113.61652 * 334.56134 * 21 20 19 41 41 H 1.08997 * 113.61805 * 105.47223 * 21 20 19 42 42 H 1.08994 * 113.61743 * 220.08803 * 25 22 21 43 43 H 1.09002 * 113.61398 * 89.18248 * 25 22 21 44 44 H 1.08997 * 109.85289 * 298.90639 * 26 14 13 45 45 H 1.09004 * 109.90672 * 177.95085 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0155 -1.2455 0.3921 9 7 1.4206 -2.3331 -0.4988 10 6 1.7437 -3.6219 0.0413 11 6 2.9487 -4.3494 -0.5931 12 6 2.9253 -4.1744 -2.1315 13 6 1.5211 -4.2550 -2.6563 14 6 1.0639 -2.8086 -2.8147 15 1 1.9316 -2.1990 -3.0665 16 7 0.1112 -2.7406 -3.9256 17 6 0.0093 -1.6138 -4.6580 18 8 0.7058 -0.6559 -4.3970 19 6 -0.9711 -1.5437 -5.8003 20 6 -0.8867 -0.1663 -6.4611 21 6 -1.7679 0.8967 -5.7841 22 6 -2.1065 1.4011 -7.1987 23 9 -1.2178 2.3717 -7.6733 24 9 -3.4472 1.7664 -7.3607 25 6 -1.7906 -0.0192 -7.6965 26 6 0.4298 -2.2446 -1.6238 27 1 -0.4849 -0.8358 0.0844 28 1 1.9468 -3.5031 1.1056 29 1 0.8682 -4.2629 -0.0624 30 1 2.9012 -5.4109 -0.3495 31 1 3.8723 -3.9286 -0.1957 32 1 3.5255 -4.9597 -2.5910 33 1 3.3491 -3.2035 -2.3885 34 1 0.8817 -4.7770 -1.9444 35 1 1.5073 -4.7628 -3.6207 36 1 -0.4462 -3.5066 -4.1340 37 1 -0.7302 -2.3134 -6.5336 38 1 -1.9809 -1.7047 -5.4230 39 1 0.1396 0.1601 -6.6296 40 1 -2.6236 0.4805 -5.2526 41 1 -1.2055 1.6142 -5.1867 42 1 -1.2465 -0.0401 -8.6406 43 1 -2.6525 -0.6864 -7.6886 44 1 -0.4646 -2.8158 -1.3750 45 1 0.1650 -1.2024 -1.8026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034277456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:10 Heat of formation + Delta-G solvation = -119.854564 kcal Electronic energy + Delta-G solvation = -27816.991293 eV Core-core repulsion = 23698.363421 eV Total energy + Delta-G solvation = -4118.627872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.83342 -48.18470 -41.26992 -39.73645 -38.50867 -36.10759 -35.14678 -32.61161 -32.26733 -30.34514 -27.93137 -27.19679 -25.91206 -25.24628 -24.02499 -21.88825 -21.57195 -20.84184 -20.58329 -19.18042 -18.50012 -18.06717 -17.57353 -17.27554 -17.14705 -16.70329 -16.18333 -16.13132 -15.76210 -15.48779 -15.20653 -15.05232 -14.86468 -14.50289 -14.35318 -14.27684 -14.20636 -13.69376 -13.50943 -13.35831 -13.29858 -13.03862 -12.65948 -12.44318 -12.26441 -12.11638 -12.03054 -11.92573 -11.85050 -11.81087 -11.52908 -11.38845 -11.31587 -11.20507 -10.72732 -10.42455 -10.02883 -8.87926 -8.25193 -5.45009 1.47315 1.58333 1.73565 1.80098 2.25203 2.51762 2.61091 2.84206 3.18519 3.27238 3.37998 3.41741 3.60606 3.74512 3.96104 4.07693 4.11967 4.23073 4.40128 4.42369 4.43532 4.50074 4.52433 4.58762 4.62621 4.68386 4.74591 4.81535 4.84909 4.89743 4.94686 5.11618 5.15854 5.24830 5.29401 5.32623 5.37344 5.42981 5.52436 5.66921 5.88446 6.38796 6.73024 7.09782 7.47930 7.74693 8.24086 8.97553 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.004093 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.367970 B = 6839.781115 C = 8299.455853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.063 4.063 3 Si 1.097 2.903 4 H -0.291 1.291 5 H -0.268 1.268 6 H -0.295 1.295 7 C -0.352 4.352 8 H 0.041 0.959 9 N -0.603 5.603 10 C 0.150 3.850 11 C -0.135 4.135 12 C -0.105 4.105 13 C -0.105 4.105 14 C 0.144 3.856 15 H 0.039 0.961 16 N -0.719 5.719 17 C 0.494 3.506 18 O -0.590 6.590 19 C -0.113 4.113 20 C -0.090 4.090 21 C -0.170 4.170 22 C 0.238 3.762 23 F -0.197 7.197 24 F -0.200 7.200 25 C -0.129 4.129 26 C 0.136 3.864 27 H 0.255 0.745 28 H 0.018 0.982 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.028 0.972 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.416 0.584 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.062 0.938 42 H 0.111 0.889 43 H 0.146 0.854 44 H 0.030 0.970 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -11.257 -16.297 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.261 4.261 3 Si 0.923 3.077 4 H -0.217 1.217 5 H -0.194 1.194 6 H -0.222 1.222 7 C -0.482 4.482 8 H 0.058 0.942 9 N -0.326 5.326 10 C 0.023 3.977 11 C -0.176 4.176 12 C -0.143 4.143 13 C -0.143 4.143 14 C 0.038 3.962 15 H 0.057 0.943 16 N -0.372 5.372 17 C 0.282 3.718 18 O -0.470 6.470 19 C -0.152 4.152 20 C -0.109 4.109 21 C -0.208 4.208 22 C 0.202 3.798 23 F -0.178 7.178 24 F -0.181 7.181 25 C -0.166 4.166 26 C 0.011 3.989 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.253 0.747 37 H 0.159 0.841 38 H 0.143 0.857 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.164 0.836 44 H 0.048 0.952 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.599 -8.883 -16.149 18.996 hybrid contribution 0.224 -0.906 0.574 1.095 sum -4.375 -9.789 -15.575 18.909 Atomic orbital electron populations 1.70883 1.07411 1.29336 1.49528 1.26808 0.96620 1.04207 0.98478 0.83092 0.74322 0.73357 0.76884 1.21703 1.19367 1.22178 1.19958 0.97001 0.90333 1.40881 0.94162 1.43995 1.49781 1.02186 1.36676 1.20427 0.96138 0.86165 0.94965 1.22710 0.98774 1.00351 0.95723 1.21277 0.96787 1.00529 0.95701 1.21270 0.97123 0.93329 1.02567 1.20449 0.91760 0.97807 0.86220 0.94253 1.46265 1.42013 1.16641 1.32292 1.21621 0.83966 0.82006 0.84242 1.90772 1.47197 1.37756 1.71283 1.21657 0.99721 0.98468 0.95402 1.22061 0.98956 0.94533 0.95301 1.24317 1.02062 0.99761 0.94692 1.22572 0.71591 0.87227 0.98446 1.92978 1.68106 1.66899 1.89836 1.92980 1.34856 1.93684 1.96564 1.24112 1.02121 0.90751 0.99655 1.20592 0.91145 0.99865 0.87324 0.93477 0.96316 0.93825 0.89323 0.94414 0.90249 0.95339 0.90140 0.88345 0.74693 0.84101 0.85713 0.89502 0.85758 0.91937 0.87015 0.83563 0.95163 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.68 12.25 21.65 0.27 -58.41 16 2 C -0.06 -3.80 4.77 84.86 0.40 -3.39 16 3 Si 1.10 55.84 29.99 68.60 2.06 57.89 16 4 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 7 C -0.35 -20.55 9.46 84.03 0.80 -19.75 16 8 H 0.04 2.40 7.94 -2.91 -0.02 2.38 16 9 N -0.60 -30.31 2.38 -708.86 -1.69 -32.00 16 10 C 0.15 6.13 5.13 87.42 0.45 6.58 16 11 C -0.14 -4.40 6.40 31.70 0.20 -4.19 16 12 C -0.10 -3.20 5.65 30.30 0.17 -3.03 16 13 C -0.11 -2.86 5.25 29.51 0.16 -2.71 16 14 C 0.14 5.28 2.01 42.75 0.09 5.36 16 15 H 0.04 1.84 6.22 -2.39 -0.01 1.83 16 16 N -0.72 -19.85 4.87 -453.32 -2.21 -22.06 16 17 C 0.49 15.21 7.74 87.66 0.68 15.89 16 18 O -0.59 -26.38 15.32 -3.02 -0.05 -26.42 16 19 C -0.11 -1.93 5.52 29.85 0.16 -1.77 16 20 C -0.09 -1.88 3.09 -10.27 -0.03 -1.91 16 21 C -0.17 -4.30 7.44 31.18 0.23 -4.07 16 22 C 0.24 5.47 3.28 31.18 0.10 5.57 16 23 F -0.20 -5.53 17.38 44.97 0.78 -4.75 16 24 F -0.20 -4.88 17.42 44.97 0.78 -4.10 16 25 C -0.13 -1.81 7.43 31.12 0.23 -1.58 16 26 C 0.14 6.30 4.10 83.58 0.34 6.64 16 27 H 0.26 16.14 7.02 -92.71 -0.65 15.49 16 28 H 0.02 0.82 8.00 -2.39 -0.02 0.80 16 29 H 0.04 1.59 6.89 -2.39 -0.02 1.57 16 30 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.03 1.09 6.82 -2.38 -0.02 1.07 16 34 H 0.08 2.08 6.28 -2.39 -0.02 2.06 16 35 H 0.10 1.97 8.04 -2.39 -0.02 1.95 16 36 H 0.42 7.28 8.61 -92.71 -0.80 6.48 16 37 H 0.14 1.23 8.14 -2.38 -0.02 1.22 16 38 H 0.12 1.50 7.88 -2.39 -0.02 1.48 16 39 H 0.09 2.31 7.73 -2.38 -0.02 2.29 16 40 H 0.12 2.70 7.92 -2.39 -0.02 2.69 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.15 1.12 8.10 -2.39 -0.02 1.10 16 44 H 0.03 1.32 8.13 -2.39 -0.02 1.30 16 45 H 0.05 2.74 5.79 -2.39 -0.01 2.73 16 Total: -1.00 -81.65 358.41 4.25 -77.40 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.32 Total: 14.82 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 3.98 Total: -2.36 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -3.63 Total: -112.47 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.42 kcal Atomic # 9 Polarization: -10.42 SS G_CDS: 1.56 Total: -8.85 kcal Atomic # 14 Polarization: 55.84 SS G_CDS: 2.06 Total: 57.89 kcal Total: -81.65 4.25 -77.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034277456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.451 kcal (2) G-P(sol) polarization free energy of solvation -81.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds